ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 111 2e-22
2gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, com... 70 8e-10
3gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Canc... 44 0.048
4gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 0.19
5gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.19
6emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 i... 42 0.19
7gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, comple... 42 0.19
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.19
9emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 42 0.19
10emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in... 42 0.19
11gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 40 0.75
12gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome ... 40 0.75
13emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in... 40 0.75
14gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell... 40 0.75
15emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 i... 40 0.75
16gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, r... 40 0.75
17gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosom... 40 0.75
18emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, ... 40 0.75
19emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 0.75
20gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55... 40 0.75
21gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 40 0.75
22gb|AC093196.2| Drosophila melanogaster clone BACR22H06, complete... 38 3.0
23gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete... 38 3.0
24gb|AY180151.1| Herpetomonas muscarum small subunit ribosomal RNA... 38 3.0
25gb|AC185533.1| Drosophila melanogaster clone BACR48D21, complete... 38 3.0
26emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 m... 38 3.0
27emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chr... 38 3.0
28gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosom... 38 3.0
29emb|CR846090.6| Zebrafish DNA sequence from clone DKEYP-78E10 in... 38 3.0
30gb|AC089987.26| Homo sapiens 12q BAC RP11-722P11 (Roswell Park C... 38 3.0
31ref|NM_176004.1| Drosophila melanogaster CG13125-RB, transcript ... 38 3.0
32ref|NM_135481.2| Drosophila melanogaster CG13125-RA, transcript ... 38 3.0
33gb|AE009926.1|AE009926 Pyrobaculum aerophilum strain IM2 section... 38 3.0
34dbj|AK038482.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 38 3.0
35gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35... 38 3.0
36gb|AE003573.4| Drosophila melanogaster chromosome X, section 74 ... 38 3.0
37gb|AC125020.7| Mus musculus chromosome 12, clone RP24-181E5, com... 38 3.0
38gb|AC005135.1|AC005135 Drosophila melanogaster DNA sequence (P1 ... 38 3.0
39gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, comp... 38 3.0
40emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on ch... 38 3.0
41emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chr... 38 3.0 
>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
          Length = 1285

 Score =  111 bits (56), Expect = 2e-22
 Identities = 63/64 (98%), Gaps = 1/64 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    aattcgatcgtcgtcccttctt-aataataatttacatacatatgcacgctggattaaat 67
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1285 aattcgatcgtcgtcccttctttaataataatttacatacatatgcacgctggattaaat 1226

                
Query: 68   ggcg 71
            ||||
Sbjct: 1225 ggcg 1222
to top
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds
          Length = 1248

 Score = 69.9 bits (35), Expect = 8e-10
 Identities = 51/55 (92%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 5    aattaattcgatcgtcgtcccttcttaat-aataatttacatacatatgcacgct 58
            |||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1248 aattaactcgatcgacgttccttcttaattaataatttacatacatatgcacgct 1194
to top
>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 174309

 Score = 44.1 bits (22), Expect = 0.048
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    taataataatttacatacatat 51
             ||||||||||||||||||||||
Sbjct: 29491 taataataatttacatacatat 29512
to top
>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    ataatttacatacatatgcac 55
             |||||||||||||||||||||
Sbjct: 95031 ataatttacatacatatgcac 95011
to top
>gb|AC104706.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_F05,
             complete sequence
          Length = 119573

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 30    taataataatttacatacatatgca 54
             ||||||||| |||||||||||||||
Sbjct: 27479 taataataacttacatacatatgca 27503
to top
>emb|BX537273.16| Zebrafish DNA sequence from clone CH211-151F2 in linkage group 10,
             complete sequence
          Length = 167226

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    taataataatttacatacata 50
             |||||||||||||||||||||
Sbjct: 60087 taataataatttacatacata 60107
to top
>gb|AC116631.6| Homo sapiens BAC clone RP11-429B11 from 4, complete sequence
          Length = 125133

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    ataatttacatacatatgcac 55
             |||||||||||||||||||||
Sbjct: 18615 ataatttacatacatatgcac 18635
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 30       taataataatttacatacatatgca 54
                ||||||||| |||||||||||||||
Sbjct: 15861488 taataataacttacatacatatgca 15861464
to top
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    aataataatttacatacatat 51
             |||||||||||||||||||||
Sbjct: 30255 aataataatttacatacatat 30275
to top
>emb|BX005014.5| Zebrafish DNA sequence from clone CH211-103E2 in linkage group 10,
             complete sequence
          Length = 160621

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    taataataatttacatacata 50
             |||||||||||||||||||||
Sbjct: 47614 taataataatttacatacata 47634
to top
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
            complete sequence
          Length = 183648

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   taataataatttacatacat 49
            ||||||||||||||||||||
Sbjct: 3763 taataataatttacatacat 3744
to top
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence
          Length = 233904

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     ttaataataatttacatacatatg 52
              ||||||||||| ||||||||||||
Sbjct: 205619 ttaataataatatacatacatatg 205596
to top
>emb|BX511098.5| Zebrafish DNA sequence from clone CH211-202L3 in linkage group 5,
             complete sequence
          Length = 72481

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ttcttaataataatttacat 45
             ||||||||||||||||||||
Sbjct: 25089 ttcttaataataatttacat 25108
to top
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 166000

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     taataataatttacatacat 49
              ||||||||||||||||||||
Sbjct: 100924 taataataatttacatacat 100943
to top
>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3,
             complete sequence
          Length = 190220

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    taataataatttacatacat 49
             ||||||||||||||||||||
Sbjct: 69241 taataataatttacatacat 69260
to top
>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone
              BACR48C05, complete sequence
          Length = 164450

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     tacatacatatgcacgctgg 60
              ||||||||||||||||||||
Sbjct: 141958 tacatacatatgcacgctgg 141939
to top
>gb|AC155299.2| Mus musculus BAC clone RP24-229D17 from chromosome 15, complete
             sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    ttaataataatttacatacatatg 52
             ||||||||||| ||||||||||||
Sbjct: 83579 ttaataataatatacatacatatg 83602
to top
>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ttcttaataataatttacat 45
             ||||||||||||||||||||
Sbjct: 69809 ttcttaataataatttacat 69790
to top
>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    taataataatttacatacat 49
             ||||||||||||||||||||
Sbjct: 76094 taataataatttacatacat 76075
to top
>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete
              sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     tacatacatatgcacgctgg 60
              ||||||||||||||||||||
Sbjct: 123669 tacatacatatgcacgctgg 123650
to top
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
             sequence
          Length = 332030

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    taataataatttacatacat 49
             ||||||||||||||||||||
Sbjct: 23638 taataataatttacatacat 23619
to top
>gb|AC093196.2| Drosophila melanogaster clone BACR22H06, complete sequence
          Length = 173008

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 29     ttaataataatttacatacatat 51
              ||||||| |||||||||||||||
Sbjct: 138839 ttaataaaaatttacatacatat 138817
to top
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence
          Length = 179038

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 29    ttaataataatttacatacatat 51
             ||||||| |||||||||||||||
Sbjct: 31698 ttaataaaaatttacatacatat 31676
to top
>gb|AY180151.1| Herpetomonas muscarum small subunit ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene and internal transcribed spacer 2, complete
           sequence; and large subunit ribosomal RNA gene, partial
           sequence
          Length = 773

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  tacatacatatgcacgctg 59
           |||||||||||||||||||
Sbjct: 430 tacatacatatgcacgctg 412
to top
>gb|AC185533.1| Drosophila melanogaster clone BACR48D21, complete sequence
          Length = 95808

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    ataataatttacatacatatgca 54
             |||||||| ||||||||||||||
Sbjct: 56117 ataataatatacatacatatgca 56095
to top
>emb|AL954219.1| Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete
             sequence
          Length = 128963

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    tcccttcttaataataatt 40
             |||||||||||||||||||
Sbjct: 47264 tcccttcttaataataatt 47282
to top
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete
             sequence
          Length = 203169

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    aataataatttacatacat 49
             |||||||||||||||||||
Sbjct: 49489 aataataatttacatacat 49507
to top
>gb|AC160115.2| Mus musculus BAC clone RP23-473K23 from chromosome 13, complete
             sequence
          Length = 182345

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    ttaataataatttacatac 47
             |||||||||||||||||||
Sbjct: 35132 ttaataataatttacatac 35114
to top
>emb|CR846090.6| Zebrafish DNA sequence from clone DKEYP-78E10 in linkage group 14,
             complete sequence
          Length = 78515

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    taataataatttacataca 48
             |||||||||||||||||||
Sbjct: 75886 taataataatttacataca 75868
to top
>gb|AC089987.26| Homo sapiens 12q BAC RP11-722P11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164945

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    ataataatttacatacata 50
             |||||||||||||||||||
Sbjct: 95473 ataataatttacatacata 95491
to top
>ref|NM_176004.1| Drosophila melanogaster CG13125-RB, transcript variant B (CG13125),
            mRNA
          Length = 1335

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 29   ttaataataatttacatacatat 51
            ||||||| |||||||||||||||
Sbjct: 1283 ttaataaaaatttacatacatat 1305
to top
>ref|NM_135481.2| Drosophila melanogaster CG13125-RA, transcript variant A (CG13125),
            mRNA
          Length = 1758

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 29   ttaataataatttacatacatat 51
            ||||||| |||||||||||||||
Sbjct: 1706 ttaataaaaatttacatacatat 1728
to top
>gb|AE009926.1|AE009926 Pyrobaculum aerophilum strain IM2 section 181 of 201 of the complete
            genome
          Length = 10255

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 24   ccttcttaataataatttacata 46
            ||||||||||||| |||||||||
Sbjct: 5538 ccttcttaataatgatttacata 5560
to top
>dbj|AK038482.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230019I21
           product:unclassifiable, full insert sequence
          Length = 2378

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 37  aatttacatacatatgcac 55
           |||||||||||||||||||
Sbjct: 793 aatttacatacatatgcac 775
to top
>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete
              sequence
          Length = 264919

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 29     ttaataataatttacatacatat 51
              ||||||| |||||||||||||||
Sbjct: 213928 ttaataaaaatttacatacatat 213906
to top
>gb|AE003573.4| Drosophila melanogaster chromosome X, section 74 of 74 of the complete
              sequence
          Length = 313035

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 32     ataataatttacatacatatgca 54
              |||||||| ||||||||||||||
Sbjct: 193281 ataataatatacatacatatgca 193259
to top
>gb|AC125020.7| Mus musculus chromosome 12, clone RP24-181E5, complete sequence
          Length = 200586

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    aatttacatacatatgcac 55
             |||||||||||||||||||
Sbjct: 80606 aatttacatacatatgcac 80588
to top
>gb|AC005135.1|AC005135 Drosophila melanogaster DNA sequence (P1 DS07070 (D331)), complete
             sequence
          Length = 67297

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 29    ttaataataatttacatacatat 51
             ||||||| |||||||||||||||
Sbjct: 64484 ttaataaaaatttacatacatat 64462
to top
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence
          Length = 159765

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    ttaataataatttacatac 47
             |||||||||||||||||||
Sbjct: 74759 ttaataataatttacatac 74741
to top
>emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on chromosome 2, complete
              sequence
          Length = 200453

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     taataataatttacataca 48
              |||||||||||||||||||
Sbjct: 136421 taataataatttacataca 136403
to top
>emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chromosome 2, complete
              sequence
          Length = 183985

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     aataatttacatacatatg 52
              |||||||||||||||||||
Sbjct: 150354 aataatttacatacatatg 150336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,102,931
Number of Sequences: 3902068
Number of extensions: 1102931
Number of successful extensions: 82610
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82474
Number of HSP's gapped (non-prelim): 135
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top