ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35d11 |
|---|---|
| Clone Library Name | barley_pub |
>POL1_GCMV (P13025) RNA1 polyprotein (P1) [Contains: P1A protein (1A)| (Protease cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2252 Score = 31.6 bits (70), Expect = 1.1 Identities = 16/68 (23%), Positives = 39/68 (57%) Frame = -1 Query: 297 KNVVEVYYSHYLGQLCVSLLDSAQILVIMYIQSDLLDYIYVADLVV*LFPLELKLVWMQS 118 +NV + ++S Y+GQ + + D + I ++ +L++ + D + + + K ++ +S Sbjct: 793 RNVKDSFFSGYMGQTIMEIDDLSSIKTDPPMEGELINLVSCKDYPLNMADVADKPIYFKS 852 Query: 117 KFVSTSSD 94 +FV +SS+ Sbjct: 853 QFVISSSN 860
>IP22_CAPAN (O49146) Wound-induced proteinase inhibitor 2 precursor| (Wound-induced proteinase inhibitor II) Length = 204 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = +2 Query: 20 CHPRLVYSDCPAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSATYI 184 C PR+ YS CP AE N +C KG NY + T+I Sbjct: 75 CDPRIFYSKCPRSEGNAE-------------NRICTNCCAGRKGCNYYSADGTFI 116
>SYI_STAAW (Q8NX29) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAS (Q6GA19) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAR (Q6GHP2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAN (P67509) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAM (P67508) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI_STAAC (Q5HGN8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>SYI1_STAAU (P41972) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 917 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYF 285 +Y E+ N V+ Y+ Y +D+ I+QRD+ + + M+ V + Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLY 746
>VGLG_BRSVA (P62648) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 4.1 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Frame = +3 Query: 78 PNEHTHRK--TSTQTYSASKP--VLTLKGTTI-----RRDQQHIYSQADHFVCTLLPRSG 230 P EH H+ TSTQ+ + S+P + T GTT R + I SQ+ LP + Sbjct: 91 PTEHNHKSTHTSTQSTTLSQPPNIDTTSGTTYGHPINRTQNRKIKSQSTPLATRKLPINP 150 Query: 231 L--NPTARHTIVQDNASSILP 287 L NP H N S LP Sbjct: 151 LESNPPENHQ--DHNNSQTLP 169
>VGLG_BRSV2 (O10685) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 29.6 bits (65), Expect = 4.1 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%) Frame = +3 Query: 78 PNEHTHRK--TSTQTYSASKP--VLTLKGTTI-----RRDQQHIYSQADHFVCTLLPRSG 230 P EH H+ TSTQ+ + S+P + T GTT R + I SQ+ LP + Sbjct: 91 PTEHNHKSTHTSTQSTTLSQPPNIDTTSGTTYGHPINRTQNRKIKSQSTPLATRKLPINP 150 Query: 231 L--NPTARHTIVQDNASSILP 287 L NP H N S LP Sbjct: 151 LESNPPENHQ--DHNNSQTLP 169
>BCSC2_ACEXY (O82861) Cellulose synthase operon protein C precursor| Length = 1326 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +2 Query: 50 PAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSA 175 P KA E + H +D+D +Q + NS N+ TR A Sbjct: 751 PGKALEIDLAVLRHNPQDLDARQAAVQAAVNSNHNSLATRLA 792
>YHP6_SCHPO (Q9USP7) Protein C902.06 in chromosome II| Length = 397 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/76 (30%), Positives = 32/76 (42%) Frame = +3 Query: 81 NEHTHRKTSTQTYSASKPVLTLKGTTIRRDQQHIYSQADHFVCTLLPRSGLNPTARHTIV 260 NE +H T +S + K T +YS A HF R +P+ RH Sbjct: 304 NELSHHNVRTTLFSDDSRFHS-KIHTHSTPPSQMYSAASHF------RYRSDPSTRHVSN 356 Query: 261 QDNASSILPPRSSLRI 308 N SS+ P +SLR+ Sbjct: 357 STNKSSLHPSPTSLRV 372
>BCSC1_ACEXY (P19450) Cellulose synthase operon protein C precursor| Length = 1319 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +2 Query: 50 PAKAQEAEWTKRTHPSEDVDTNLLCIQTSFNSKGNNYTTRSA 175 P KA E + H +D+D +Q + NS N+ TR A Sbjct: 751 PGKALEIDLAVLRHNPQDLDARQAAVQAAVNSDHNSLATRLA 792
>SYI_STAS1 (Q49WX5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 916 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +1 Query: 157 LYDEISNIYIVKQITLYVHYYQDLG*IQQRDTQLSKIMRVVYFHHVL 297 +Y E+ N V+ Y+ Y +D+ I++RD+ + M+ V + V+ Sbjct: 704 IYQEVQNFINVELSNFYLDYGKDILYIEERDSHKRRSMQTVLYQIVV 750
>NFAT5_MOUSE (Q9WV30) Nuclear factor of activated T-cells 5 (T cell transcription| factor NFAT5) (NF-AT5) (Rel domain-containing transcription factor NFAT5) Length = 1225 Score = 28.5 bits (62), Expect = 9.1 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = +3 Query: 72 NGPNEHTHRKTSTQTYSASKP--------VLTLKGTTIRRDQQHIYSQADHFVCTLLPRS 227 + PN H +TST + +P + L+G+++ +DQQ L +S Sbjct: 1091 HSPNPIVHSQTSTASSEQLQPSMFHSQNTIAVLQGSSVPQDQQS--------PNIFLSQS 1142 Query: 228 GLNPTARHTIVQDNASSILPPRSSLRITRMTPN 326 +N +T+ Q+ S ++S+ + T N Sbjct: 1143 SINNLQTNTVAQEEQISFFAAQNSISPLQSTSN 1175
>HMP_PSEAE (Q9I0H4) Flavohemoprotein (Hemoglobin-like protein)| (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) (NO oxygenase) (NOD) Length = 393 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +3 Query: 183 YSQADHFVCTLLPRSGLNPTARHTIVQDNASSILPPRSSLRITRMTPNRYIARV 344 + Q +HF C PR+G + A + ++ + LP L + P ++A+V Sbjct: 313 HEQVEHFFCYSEPRAGDSADAEGLLSREKLADWLPQERDLDAYFLGPRPFMAQV 366 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,748,953 Number of Sequences: 219361 Number of extensions: 1478170 Number of successful extensions: 3329 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3329 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
