ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart35d10 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 83.6 bits (205), Expect = 3e-16 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 3/83 (3%) Frame = -2 Query: 501 DQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQW 328 D++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG IGDQW Sbjct: 171 DKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQW 230 Query: 327 SDILGAPEG-ARTFKLPDPMYYI 262 SD+LG G +RTFKLP+P+YYI Sbjct: 231 SDLLGGHRGESRTFKLPNPLYYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 82.4 bits (202), Expect = 6e-16 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%) Frame = -2 Query: 501 DQRAITVTNLRRQGISGWMNLLLKQPGF-KGSAVTYKSGERQKLQDAGYVIVGNIGDQWS 325 D+ A+T NL++ G W L+LK P +A++YKS R+ L GY IVG IGDQWS Sbjct: 172 DKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWS 231 Query: 324 DILGAPEG-ARTFKLPDPMYYI 262 D+LG G +RTFKLP+PMYYI Sbjct: 232 DLLGDHRGESRTFKLPNPMYYI 253
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 80.5 bits (197), Expect = 2e-15 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -2 Query: 504 EDQRAITVTNLRRQGISGWMNLLLKQPGFKG-SAVTYKSGERQKLQDAGYVIVGNIGDQW 328 E R++TV NL G W L+L+ G +A TYKS R + + G+ IVGN GDQW Sbjct: 173 ERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQW 232 Query: 327 SDILGAPEGARTFKLPDPMYYI 262 SD+LG+ R+FKLP+PMYYI Sbjct: 233 SDLLGSSMSYRSFKLPNPMYYI 254
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 78.2 bits (191), Expect = 1e-14 Identities = 38/76 (50%), Positives = 51/76 (67%) Frame = -2 Query: 489 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGA 310 IT+ NL+ G++ W +L+LK G K + V YKS R L GY IVGNIGDQW+D++ Sbjct: 194 ITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVED 253 Query: 309 PEGARTFKLPDPMYYI 262 G R FKLP+P+YY+ Sbjct: 254 TPG-RVFKLPNPLYYV 268
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 75.9 bits (185), Expect = 6e-14 Identities = 40/79 (50%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Frame = -2 Query: 501 DQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNIGDQW 328 D++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG IGDQW Sbjct: 168 DKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQW 227 Query: 327 SDILGAPEG-ARTFKLPDP 274 SD+LG G +RTFKLP+P Sbjct: 228 SDLLGGHRGESRTFKLPNP 246
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 73.9 bits (180), Expect = 2e-13 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -2 Query: 489 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGA 310 +T+ NL G++ W +L+LK G V YKS R+ L GY IVGNIGDQW+D++ Sbjct: 189 VTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVED 248 Query: 309 PEGARTFKLPDPMYYI 262 G R FKLP+P+YY+ Sbjct: 249 TPG-RVFKLPNPLYYV 263
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 205 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 306 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 205 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 306 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 205 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 306 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +1 Query: 205 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 306 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 345 NIGDQWSDILGAPEGARTFKLPDPMY 268 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 30.4 bits (67), Expect = 2.8 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -1 Query: 499 PEGHHRHQPPPP 464 P GHHRH PPPP Sbjct: 76 PGGHHRHPPPPP 87
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 229 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 363 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 229 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 363 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 229 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 363 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 30.0 bits (66), Expect = 3.7 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +1 Query: 337 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEV---GDGD 489 AD+ +D PGV+Q LP L H R L GL + E +P D V G GD Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGD 461
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 29.6 bits (65), Expect = 4.8 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = -2 Query: 474 LRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAG-YVIVGNIGDQWSDILGAPEGA 298 + RQG+ + L PG +G+ V GE + AG V+V N W + + P Sbjct: 94 MARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVP-SV 152 Query: 297 RTFKLPDPMYY 265 +TF +P+ M + Sbjct: 153 QTFLIPEAMTF 163
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -3 Query: 503 RTRGPSPSPTSAARGSLGG*TSC*SNPGSRALR*PTSPARGRS 375 +T+ +PSP SA R S S P + + P SPAR RS Sbjct: 725 KTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARSRS 767
>PROB_PROMA (Q7VC78) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 364 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 7 NAHGFLVIEQKEKQHNKDPLIKQHATSPLTRLIHSSN*SQALNNGNEPSNNWG 165 +A +++ +K ++ DP + A P+T +HSSN + + + SNNWG Sbjct: 158 SADQLVLLTDIDKLYSSDPKFDKDA-KPITD-VHSSNEIIQIQSNSNESNNWG 208
>NLGN1_RAT (Q62765) Neuroligin-1 precursor (Neuroligin I)| Length = 843 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 499 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 407 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>NLGN1_MOUSE (Q99K10) Neuroligin-1 precursor| Length = 843 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 499 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 407 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative| secreted protein ZSIG13) Length = 383 Score = 28.9 bits (63), Expect = 8.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 429 QPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 265 QPG GS V + +RQ+ + +I G QW D+ G+P+ P+ Y Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKY 366
>FABG6_BRANA (P27582) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) (Fragments) Length = 201 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 468 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 304 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 124 REGASRNINVNVVCPGFIASEMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,769,656 Number of Sequences: 219361 Number of extensions: 1447036 Number of successful extensions: 4682 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4656 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
