ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35d07 |
|---|---|
| Clone Library Name | barley_pub |
>TBG2_EUPCR (P54404) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 462 Score = 31.6 bits (70), Expect = 0.80 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +1 Query: 223 LELVH-----ANGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 L+L+H N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 215 LKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFL 266
>TBG1_EUPCR (P54403) Tubulin gamma-1 chain (Gamma-1 tubulin)| Length = 462 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 226 NSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFL 266
>TBG_EUPAE (P54402) Tubulin gamma chain (Gamma tubulin)| Length = 461 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 226 NSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFL 266
>TBG2_EUPOC (P90548) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 461 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 226 NSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFL 266
>TBG1_EUPOC (P34786) Tubulin gamma-1 chain (Gamma-1 tubulin)| Length = 461 Score = 30.8 bits (68), Expect = 1.4 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 226 NSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFL 266
>TBG_CHLRE (Q39582) Tubulin gamma chain (Gamma tubulin)| Length = 468 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFL 269
>TBG_ANEPH (P34785) Tubulin gamma chain (Gamma tubulin)| Length = 472 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 230 NSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFL 270
>TBG_PHYPA (Q9XFG3) Tubulin gamma chain (Gamma tubulin)| Length = 475 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFL 269
>TBG2_ARATH (P38558) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 474 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 269
>TBG1_ARATH (P38557) Tubulin gamma-1 chain (Gamma-1 tubulin)| Length = 474 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 269
>TBG3_MAIZE (Q41874) Tubulin gamma-3 chain (Gamma-3 tubulin) (Fragment)| Length = 421 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 181 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 221
>TBG2_ORYSA (O49068) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 469 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 269
>TBG2_MAIZE (Q41808) Tubulin gamma-2 chain (Gamma-2 tubulin)| Length = 469 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 269
>TBG1_MAIZE (Q41807) Tubulin gamma-1 chain (Gamma-1 tubulin)| Length = 469 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +1 Query: 241 NGVLQEILGLGALVVVHPGEDVNPVLGLAALVQPVPHCHVL 363 N ++ ++ + +PG N ++GL A + P P CH L Sbjct: 229 NSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFL 269
>PUR4_YEAST (P38972) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1358 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = -2 Query: 306 NIFPRMYDYKGAQAKDFLEDAIGVHQLKEDIRWAH 202 N P +YD A K FLE I +HQ KEDI A+ Sbjct: 896 NKSPTVYD--NAILKGFLESLIQLHQQKEDIVLAY 928 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,009,427 Number of Sequences: 219361 Number of extensions: 1045627 Number of successful extensions: 2928 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2928 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
