ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35d04 |
|---|---|
| Clone Library Name | barley_pub |
>Y3578_PSEAE (Q9HY42) Hypothetical protein PA3578| Length = 261 Score = 85.5 bits (210), Expect = 5e-17 Identities = 48/91 (52%), Positives = 54/91 (59%) Frame = -3 Query: 409 RGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS 230 RGVIVTA G DF +RFF P G+DEDPV GSAHC L PYW +L K L A Q S Sbjct: 173 RGVIVTA---RGLQKDFVSRFFAPAMGVDEDPVTGSAHCSLIPYWAQRLNKLSLTAQQCS 229 Query: 229 PRSGTLYLELDVENRRVRIQGEAVTVMAGTL 137 R G L+ L E RV I G AV V +G + Sbjct: 230 ARGGELWCRL--EGERVSIAGHAVLVASGRI 258
>Y283_BACHD (Q9KG32) Hypothetical protein BH0283| Length = 265 Score = 84.3 bits (207), Expect = 1e-16 Identities = 44/101 (43%), Positives = 64/101 (63%) Frame = -3 Query: 439 NIEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLG 260 N + + RG+IVT+ + + + YDF +R F P G++EDPV GSAHC L PYW KL Sbjct: 166 NFSLLEQIDTRGIIVTSKSTS-TEYDFISRCFFPAVGVNEDPVTGSAHCCLGPYWQEKLN 224 Query: 259 KQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 137 K + +A+Q S R G L ++L ++ RV + G+AVTV+ L Sbjct: 225 KNEFLAYQASKRGGMLKIKL--QHDRVFLLGQAVTVLRSEL 263
>PHZ1_MOUSE (Q9CXN7) Probable oxidoreductase 3110049J23Rik| Length = 288 Score = 80.9 bits (198), Expect = 1e-15 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Frame = -3 Query: 409 RGVIVTAPAPAGSG---YDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAF 239 RG+I+T G YDF++R F P G+ EDPV GS H +L PYW +LGK+++ AF Sbjct: 194 RGLILTVKGEPGGQTALYDFYSRCFAPWVGVAEDPVTGSTHTLLGPYWSEELGKKEMRAF 253 Query: 238 QVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 131 Q S R G L + L + RV I+G AV V+ GTL A Sbjct: 254 QCSRRGGELDINLRPDG-RVDIKGGAVIVLEGTLTA 288
>Y2770_PSEAE (Q9I073) Hypothetical protein PA2770| Length = 259 Score = 80.9 bits (198), Expect = 1e-15 Identities = 46/91 (50%), Positives = 56/91 (61%) Frame = -3 Query: 409 RGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS 230 RGV VTA + +DF +R+F P G++EDPV GSAH LAPYW +LGK +L A Q Sbjct: 172 RGVAVTARSQR---FDFVSRWFGPNVGVNEDPVTGSAHTSLAPYWAQRLGKTRLSAEQGG 228 Query: 229 PRSGTLYLELDVENRRVRIQGEAVTVMAGTL 137 R G LE DV RV I G+A M+GTL Sbjct: 229 ARKGR--LECDVRGERVVISGKAALYMSGTL 257
>PHZ2_MOUSE (Q9DCG6) Probable oxidoreductase 0610038K03Rik| Length = 288 Score = 80.1 bits (196), Expect = 2e-15 Identities = 46/96 (47%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = -3 Query: 409 RGVIVTAPAPAGSG---YDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAF 239 RG+I+T G YDF++R+F P GI EDPV GSAH VL+ YW +L K+++ AF Sbjct: 194 RGLILTVKGEPGGQTPPYDFYSRYFAPWVGIAEDPVTGSAHTVLSSYWSQQLRKKEMRAF 253 Query: 238 QVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 131 Q S R G L + L + RV I+G AV V+ GTL A Sbjct: 254 QCSRRGGELDISLRPDG-RVDIKGGAVIVLEGTLTA 288
>ULA4_HUMAN (P30039) MAWD binding protein (Unknown protein 32 from 2D-page of| liver tissue) Length = 288 Score = 79.0 bits (193), Expect = 5e-15 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Frame = -3 Query: 409 RGVIVTAPAPAGS---GYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAF 239 +G+I+T G +DF++R+F P G+ EDPV GSAH VL+ YW LGK+++ AF Sbjct: 194 KGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSYWSQHLGKKEMHAF 253 Query: 238 QVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTLFA 131 Q S R G L + L + RV I+G A V+ GTL A Sbjct: 254 QCSHRGGELGISLRPDG-RVDIRGGAAVVLEGTLTA 288
>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221| Length = 275 Score = 74.7 bits (182), Expect = 9e-14 Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 2/95 (2%) Frame = -3 Query: 415 AGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQ 236 AG+ V+V A A AG+ Y +RFF P FGI EDP GSAHC+L P +G KLG +L Q Sbjct: 178 AGQTVVV-AQADAGADYAVVSRFFAPGFGIPEDPATGSAHCILMPLFGDKLGAGRLKFHQ 236 Query: 235 VSPRSGTLYLELDVENR--RVRIQGEAVTVMAGTL 137 P G +L+ ENR RV ++G TVM L Sbjct: 237 AYPGRGG---DLECENRGARVLLRGRGFTVMESQL 268
>Y3195_VIBCH (Q9KMG3) Hypothetical protein VCA0395| Length = 279 Score = 58.9 bits (141), Expect = 5e-09 Identities = 36/72 (50%), Positives = 40/72 (55%) Frame = -3 Query: 403 VIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPR 224 +IVTA A SGY R+F PK GI ED GSA C LAPYW KLG L A Q+S Sbjct: 196 LIVTA-ANGNSGY--VLRYFAPKIGISEDLATGSAQCSLAPYWFKKLGSDALNARQLSMS 252 Query: 223 SGTLYLELDVEN 188 G +E EN Sbjct: 253 GGYFEVERTTEN 264
>Y3446_CLOAB (P58293) Hypothetical protein CAC3446| Length = 302 Score = 38.1 bits (87), Expect = 0.010 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 11/111 (9%) Frame = -3 Query: 436 IEEIRKCAGRGVIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY------- 278 + +I KC G V A S R F P GI+EDPV G+A+ L Y Sbjct: 191 LSKIIKC--NGYYVFAVTSEDSDILIHGRMFAPAIGINEDPVTGNANGPLGAYLVHHKLA 248 Query: 277 -WGGKLGKQKLVAFQVSPRSGTLYLELDVENR---RVRIQGEAVTVMAGTL 137 + + K K + R G + +E+ V+ V+I G AV V L Sbjct: 249 CYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVKISGNAVVVFKSEL 299
>AES1_SCHPO (Q8NIL3) Antisense-enhancing sequence 1 (AES factor 1)| Length = 296 Score = 34.3 bits (77), Expect = 0.14 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%) Frame = -3 Query: 361 FFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS-----PRSGTLYLELD 197 F +R F P ++EDP CGS + Y G ++F +S R + +D Sbjct: 212 FESRSFAPLIHVNEDPACGSGAGAVGVYIGSSQKTPTSLSFTISQGTKLSRQAISKVSVD 271 Query: 196 VENRR---VRIQGEAVTVMAGTLF 134 V + + V + G+A T ++G F Sbjct: 272 VSSNKSIAVFVGGQAKTCISGKSF 295
>YHI9_YEAST (P38765) Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic| region Length = 294 Score = 33.1 bits (74), Expect = 0.31 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 9/99 (9%) Frame = -3 Query: 406 GVIVTAPAP-AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS 230 G+I+ P A + R F P + EDPVCGS LA Y +K +S Sbjct: 194 GIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITIS 253 Query: 229 -----PRSGTLYLELDVE---NRRVRIQGEAVTVMAGTL 137 R+G + + E + I G A TV+ G + Sbjct: 254 EGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKI 292
>Y1330_DEIRA (Q9RUQ2) Hypothetical protein DR1330| Length = 308 Score = 32.3 bits (72), Expect = 0.54 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Frame = -3 Query: 403 VIVTAPAPAGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPR 224 V V A AP G F R F P GI EDPV GSA L L + + + + Sbjct: 208 VSVYAYAPVGVNR-FAARDFAPLVGIPEDPVTGSAGGALL----ALLASEGRLPLRGNRA 262 Query: 223 SGTLY----------LELDVENRRVRIQGEAV 158 SG +Y +E++VE R R++ V Sbjct: 263 SGLIYQGHALGTPGEIEVEVEVRGTRVEAVQV 294
>SYT_ZYMMO (Q5NPH1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 659 Score = 31.6 bits (70), Expect = 0.91 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = -1 Query: 399 LLQHRRLLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESW 262 L H L+ A H Q + L ++ A +VFWHP G W Sbjct: 235 LKAHLERLEEAQKRDHRRLGQEMDLFHLQQEAQGSVFWHPNGYTIW 280
>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)| Length = 582 Score = 24.6 bits (52), Expect(2) = 1.7 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 342 QKKRVKKS*PDPAGAGAVTITPLPAHFLISS 434 Q+K + P P A A T+ P PAH + ++ Sbjct: 404 QQKTPLPAPPPPPAAPAQTLVPAPAHLVATA 434 Score = 24.6 bits (52), Expect(2) = 1.7 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Frame = +1 Query: 190 SQHPAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSV---HCHIPDPHQ 327 S P P ++ +L P T P + P HP+ HSV H+P Q Sbjct: 356 SHRPQPELLKSTLPPPSTTPAPLPPHPHPH---PHSVALPPAHLPVQQQ 401
>PHZF_PSECL (Q51520) Phenazine biosynthesis protein phzF| Length = 278 Score = 30.4 bits (67), Expect = 2.0 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%) Frame = -3 Query: 379 AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY----------------WGGKLGKQKL 248 AG+G + +R F P +G+ ED GSA LA + G ++G+ L Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQQIEILQGVEIGRPSL 247 Query: 247 VAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 137 + + R+ L RV + G VT GT+ Sbjct: 248 MFARAEGRADQL--------TRVEVSGNGVTFGRGTI 276
>PHZF_PSEFL (Q51792) Phenazine biosynthesis protein phzF| Length = 278 Score = 30.0 bits (66), Expect = 2.7 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%) Frame = -3 Query: 379 AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLAPY----------------WGGKLGKQKL 248 AG+G + +R F P +G+ ED GSA LA + G ++G+ L Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 247 Query: 247 VAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAGTL 137 + + R+ L RV + G VT GT+ Sbjct: 248 MFAKAEGRAEQL--------TRVEVSGNGVTFGRGTI 276
>SYT_BURPS (Q63TM2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/56 (32%), Positives = 23/56 (41%) Frame = -1 Query: 381 LLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESWGNKNW*RFRYLQGAGH 214 +L+ A H + L L I+ A VFWHP G W R L AG+ Sbjct: 234 MLEEAEKRDHRKLGKQLDLFHIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGY 289
>SYT_BURMA (Q62KI2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 635 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/56 (32%), Positives = 23/56 (41%) Frame = -1 Query: 381 LLDRAMTSSHVFSAQNLGLMRIRYVAVHTVFWHPIGVESWGNKNW*RFRYLQGAGH 214 +L+ A H + L L I+ A VFWHP G W R L AG+ Sbjct: 234 MLEEAEKRDHRKLGKQLDLFHIQEEAPGMVFWHPKGWTLWQQVEQYMRRRLDAAGY 289
>DDHD1_HUMAN (Q8NEL9) Probable phospholipase DDHD1 (EC 3.1.1.-) (DDHD domain| protein 1) (Phosphatidic acid-preferring phospholipase A1 homolog) (PA-PLA1) Length = 900 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = +1 Query: 217 SRSLEIPETLPVFVSPAFHPNRVPKHSVHCHIPDPHQSQILGRKNV*RSHSPIQQAPVL 393 S L P F++PA P V ++ IP P S +L R++ S + I +A +L Sbjct: 690 SNPLPYEHMKPSFLNPAKEPTSVSENEGISTIPSPVTSPVLSRRHYGESITNIGKASIL 748
>ATP7B_RAT (Q64535) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper pump 2)| (Wilson disease-associated protein homolog) (Pinal night-specific ATPase) Length = 1451 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 312 TGSSSIPNFGQKKRVKKS*PDPAGAGAVTITPLPAHFLISSM 437 +GSSS+P+ G +R ++ P P +TIT +P + M Sbjct: 334 SGSSSVPSLGSSQRQQE--PGPCRTAVLTITGIPRDSSVQPM 373
>LKH1_SCHPO (Q10156) Dual specificity protein kinase lkh1 (EC 2.7.12.1)| Length = 575 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 199 PAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSVHCH 309 P+P + + + P +P HPNR+P H +H H Sbjct: 56 PSPNLPHQPISKPPVIPNLPKLQVHPNRLP-HPIHNH 91
>Y1019_SYNY3 (P73125) Hypothetical protein slr1019| Length = 306 Score = 28.5 bits (62), Expect = 7.7 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Frame = -3 Query: 352 RFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSP-----RSGTLYLELDVEN 188 R F P GI EDP GS L Y +L +Q+ R L L + + Sbjct: 223 RMFAPGLGIAEDPATGSGVAALGGYLDDRLDTPGSHHWQIEQGKALGRPSQLQLTVVKDG 282 Query: 187 ---RRVRIQGEAVTVMAG 143 R V++ G +V V G Sbjct: 283 QGIRAVKVAGRSVLVSEG 300
>PHZF_PSEAE (O69754) Phenazine/pyocyanine biosynthesis protein phzF| Length = 278 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -3 Query: 379 AGSGYDFFTRFFCPKFGIDEDPVCGSAHCVLA 284 AG+G + +R F P +G+ ED GSA LA Sbjct: 188 AGAGRHWRSRMFSPAYGVVEDAATGSAAGPLA 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,370,846 Number of Sequences: 219361 Number of extensions: 1532918 Number of successful extensions: 3682 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3681 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
