Clone Name | rbart35d04 |
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Clone Library Name | barley_pub |
>ref|NM_188014.1| Oryza sativa (japonica cultivar-group), Ozsa8434 predicted mRNA Length = 930 Score = 174 bits (88), Expect = 2e-40 Identities = 244/296 (82%) Strand = Plus / Minus Query: 135 aagagtgtcccagccatgacagtaacagcttcgccctgaatccgcactcgccgattctca 194 ||||| ||||| ||||| ||||| |||||||| ||||| ||||| |||| || ||||| Sbjct: 923 aagagagtcccggccatcacagtgacagcttctccctggatccggactctcctgttctcg 864 Query: 195 acatccagctccaggtatagtgtcccgctccttggagatacctgaaacgctaccagtttt 254 | |||||||||| ||| | ||| || |||||||| || |||||||||| |||||| Sbjct: 863 ccgtccagctccaagtacaatgttccactccttggcgaagcctgaaacgccgtaagtttt 804 Query: 255 tgtttccccagctttccaccccaatagggtgccaaaacacagtgtgcactgccacatacc 314 ||||||||||||||||||||||| || ||||||| |||||| ||||| || ||||| || Sbjct: 803 tgtttccccagctttccaccccagtaaggtgccagaacacaatgtgcgcttccacacaca 744 Query: 315 ggatcctcatcaatcccaaattttgggcagaaaaaacgtgtgaagaagtcatagcccgat 374 ||||||||||| |||||||||||||||||||| || |||| ||||||||||| | ||| Sbjct: 743 ggatcctcatctatcccaaattttgggcagaagaatcgtgaaaagaagtcataatcagat 684 Query: 375 ccagcaggcgccggtgctgtaacaatcacgcctctgccggcacactttctaatttc 430 |||||||| || ||| | |||||||| || ||||| || |||| ||| ||||||| Sbjct: 683 ccagcaggtgctggtcccgtaacaataactcctctaccatcacattttttaatttc 628
>dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full insert sequence Length = 1161 Score = 174 bits (88), Expect = 2e-40 Identities = 244/296 (82%) Strand = Plus / Minus Query: 135 aagagtgtcccagccatgacagtaacagcttcgccctgaatccgcactcgccgattctca 194 ||||| ||||| ||||| ||||| |||||||| ||||| ||||| |||| || ||||| Sbjct: 1005 aagagagtcccggccatcacagtgacagcttctccctggatccggactctcctgttctcg 946 Query: 195 acatccagctccaggtatagtgtcccgctccttggagatacctgaaacgctaccagtttt 254 | |||||||||| ||| | ||| || |||||||| || |||||||||| |||||| Sbjct: 945 ccgtccagctccaagtacaatgttccactccttggcgaagcctgaaacgccgtaagtttt 886 Query: 255 tgtttccccagctttccaccccaatagggtgccaaaacacagtgtgcactgccacatacc 314 ||||||||||||||||||||||| || ||||||| |||||| ||||| || ||||| || Sbjct: 885 tgtttccccagctttccaccccagtaaggtgccagaacacaatgtgcgcttccacacaca 826 Query: 315 ggatcctcatcaatcccaaattttgggcagaaaaaacgtgtgaagaagtcatagcccgat 374 ||||||||||| |||||||||||||||||||| || |||| ||||||||||| | ||| Sbjct: 825 ggatcctcatctatcccaaattttgggcagaagaatcgtgaaaagaagtcataatcagat 766 Query: 375 ccagcaggcgccggtgctgtaacaatcacgcctctgccggcacactttctaatttc 430 |||||||| || ||| | |||||||| || ||||| || |||| ||| ||||||| Sbjct: 765 ccagcaggtgctggtcccgtaacaataactcctctaccatcacattttttaatttc 710
>gb|AY112642.1| Zea mays CL17031_1 mRNA sequence Length = 414 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 203 ctccaggtatagtgtcccgctccttggagatacctgaaacgctaccagtttttgtttccc 262 ||||||||||||| | || |||| || ||| | |||||||||| |||||| |||||||| Sbjct: 164 ctccaggtatagtattccactccgaggggatgcttgaaacgctatcagtttgtgtttccc 105 Query: 263 cagctttccaccccaatagggtgccaaaacacagtgtgcactgccaca 310 |||||| |||||||| || ||||| |||||||| |||||||||||||| Sbjct: 104 cagcttcccaccccagtaaggtgctaaaacacaatgtgcactgccaca 57
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 83.8 bits (42), Expect = 4e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 232 atacctgaaacgctaccagtttttgtttccccagctttccaccccaatagggtgccaaaa 291 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||| || Sbjct: 9113948 atacctgaaacgccgtaagtttttgtttccccagctttccaccccagtaaggtgccagaa 9114007 Query: 292 cacagtgtgcactgccacataccggatcct 321 |||| ||||| || ||||| || ||||||| Sbjct: 9114008 cacaatgtgcgcttccacacacaggatcct 9114037 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 319 cctcatcaatcccaaattttgggcagaaaaaacgtgtgaagaagtcatagcccgatccag 378 ||||||| |||||||||||||||||||| || |||| ||||||||||| | ||||||| Sbjct: 9114830 cctcatctatcccaaattttgggcagaagaatcgtgaaaagaagtcataatcagatccag 9114889 Query: 379 caggcgccggtgctgtaacaatcacgcctctgccggcacactttctaatttc 430 |||| || ||| | |||||||| || ||||| || |||| ||| ||||||| Sbjct: 9114890 caggtgctggtcccgtaacaataactcctctaccatcacattttttaatttc 9114941
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 83.8 bits (42), Expect = 4e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 232 atacctgaaacgctaccagtttttgtttccccagctttccaccccaatagggtgccaaaa 291 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||| || Sbjct: 142955 atacctgaaacgccgtaagtttttgtttccccagctttccaccccagtaaggtgccagaa 143014 Query: 292 cacagtgtgcactgccacataccggatcct 321 |||| ||||| || ||||| || ||||||| Sbjct: 143015 cacaatgtgcgcttccacacacaggatcct 143044 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 319 cctcatcaatcccaaattttgggcagaaaaaacgtgtgaagaagtcatagcccgatccag 378 ||||||| |||||||||||||||||||| || |||| ||||||||||| | ||||||| Sbjct: 143837 cctcatctatcccaaattttgggcagaagaatcgtgaaaagaagtcataatcagatccag 143896 Query: 379 caggcgccggtgctgtaacaatcacgcctctgccggcacactttctaatttc 430 |||| || ||| | |||||||| || ||||| || |||| ||| ||||||| Sbjct: 143897 caggtgctggtcccgtaacaataactcctctaccatcacattttttaatttc 143948
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 83.8 bits (42), Expect = 4e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 232 atacctgaaacgctaccagtttttgtttccccagctttccaccccaatagggtgccaaaa 291 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||| || Sbjct: 14330 atacctgaaacgccgtaagtttttgtttccccagctttccaccccagtaaggtgccagaa 14389 Query: 292 cacagtgtgcactgccacataccggatcct 321 |||| ||||| || ||||| || ||||||| Sbjct: 14390 cacaatgtgcgcttccacacacaggatcct 14419 Score = 71.9 bits (36), Expect = 2e-09 Identities = 93/112 (83%) Strand = Plus / Plus Query: 319 cctcatcaatcccaaattttgggcagaaaaaacgtgtgaagaagtcatagcccgatccag 378 ||||||| |||||||||||||||||||| || |||| ||||||||||| | ||||||| Sbjct: 15212 cctcatctatcccaaattttgggcagaagaatcgtgaaaagaagtcataatcagatccag 15271 Query: 379 caggcgccggtgctgtaacaatcacgcctctgccggcacactttctaatttc 430 |||| || ||| | |||||||| || ||||| || |||| ||| ||||||| Sbjct: 15272 caggtgctggtcccgtaacaataactcctctaccatcacattttttaatttc 15323
>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence Length = 128493 Score = 46.1 bits (23), Expect = 0.096 Identities = 41/47 (87%) Strand = Plus / Plus Query: 275 ccaatagggtgccaaaacacagtgtgcactgccacataccggatcct 321 ||||||||||||||| |||| |||||||| ||||| || ||||||| Sbjct: 58636 ccaatagggtgccaagccacaatgtgcactcccacaaacaggatcct 58682 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ccaaattttgggcagaaaaa 349 |||||||||||||||||||| Sbjct: 48409 ccaaattttgggcagaaaaa 48428
>gb|AC129591.4| Mus musculus BAC clone RP24-510A3 from chromosome 14, complete sequence Length = 176214 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 139 gtgtcccagccatgacagtaac 160 |||||||||||||||||||||| Sbjct: 152170 gtgtcccagccatgacagtaac 152191
>gb|AC146617.3| Mus musculus BAC clone RP23-14M15 from 14, complete sequence Length = 221015 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 gtgtcccagccatgacagtaac 160 |||||||||||||||||||||| Sbjct: 212013 gtgtcccagccatgacagtaac 211992
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 tcccagccatgacagtaacagcttc 166 ||||| ||||||||||||||||||| Sbjct: 39597 tcccaaccatgacagtaacagcttc 39573
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 tcccagccatgacagtaacagcttc 166 ||||| ||||||||||||||||||| Sbjct: 18134992 tcccaaccatgacagtaacagcttc 18134968
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence Length = 182955 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gctccttggagatacctgaaa 241 ||||||||||||||||||||| Sbjct: 119478 gctccttggagatacctgaaa 119498
>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence Length = 198235 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 59 gcagcaaatatatttatttctacaaaggc 87 |||||||| ||| |||||||||||||||| Sbjct: 59163 gcagcaaaaataattatttctacaaaggc 59135
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 tcccagccatgacagtaacagcttc 166 ||||| ||||||||||||||||||| Sbjct: 18128533 tcccaaccatgacagtaacagcttc 18128509
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 tccgcactcgccgattctcaa 195 ||||||||||||||||||||| Sbjct: 3177176 tccgcactcgccgattctcaa 3177196
>gb|AF092365.1|AF092365 Cynolebias whitei tRNA-Ile gene, partial sequence; tRNA-Gln and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit II gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome c oxidase subunit I gene, partial cds; mitochondrial genes for mitochondrial products Length = 1578 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cagcaaatatatttatttcta 80 ||||||||||||||||||||| Sbjct: 265 cagcaaatatatttatttcta 245
>gb|AC150752.4| Bos taurus BAC CH240-288E20 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 165924 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 caaatatatttatttctaca 82 |||||||||||||||||||| Sbjct: 110960 caaatatatttatttctaca 110979
>gb|AF434836.1| Oryzorictes talpoides NADH dehydrogenase subunit 2 (NADH2) gene, complete cds; mitochondrial gene for mitochondrial product Length = 1044 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 agcaaatatatttatttcta 80 |||||||||||||||||||| Sbjct: 117 agcaaatatatttatttcta 98
>gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence Length = 204590 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cagcaaatatatttatttct 79 |||||||||||||||||||| Sbjct: 114435 cagcaaatatatttatttct 114416
>emb|AL365506.10| Human DNA sequence from clone RP11-640E12 on chromosome 10, complete sequence Length = 81831 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tccttggagatacctgaaac 242 |||||||||||||||||||| Sbjct: 69533 tccttggagatacctgaaac 69514
>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12 Contains the 3' end of the gene for sister-of-mammalian grainyhead (SOM), a novel gene (LOC90529) and a novel gene (DJ462O23.2), complete sequence Length = 154154 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ttccccagctttccacccca 277 |||||||||||||||||||| Sbjct: 31917 ttccccagctttccacccca 31936
>gb|AC095904.7| Rattus norvegicus 9 BAC CH230-10L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 212732 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aatatatttatttctacaaa 84 |||||||||||||||||||| Sbjct: 96569 aatatatttatttctacaaa 96588
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 tccagcaggcgccggtgctg 393 |||||||||||||||||||| Sbjct: 154612 tccagcaggcgccggtgctg 154631
>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 cagcaaatatatttatttct 79 |||||||||||||||||||| Sbjct: 13700 cagcaaatatatttatttct 13719
>gb|AF038312.1| Antechinus melanurus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, complete sequence Length = 957 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 caccccaatagggtgccaaa 290 |||||||||||||||||||| Sbjct: 639 caccccaatagggtgccaaa 658
>gb|AF426026.1| Piromyces sp. E2 heat shock protein 60 (E2HSP60.1) mRNA, complete cds Length = 2438 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 aaatatatttatttctacaa 83 |||||||||||||||||||| Sbjct: 2349 aaatatatttatttctacaa 2368
>gb|AC154792.2| Mus musculus BAC clone RP23-85E10 from chromosome 13, complete sequence Length = 201302 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 cagcaaatatatttatttctacaa 83 |||||||||||||| ||||||||| Sbjct: 85393 cagcaaatatatttttttctacaa 85416
>gb|U22457.1|YPU22457 Yersinia pestis insertion sequence IS200-like unknown gene; and inv gene, complete sequence Length = 3772 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 383 cgccggtgctgtaacaatcacgcctctg 410 |||||||| ||| ||||||||||||||| Sbjct: 3088 cgccggtgatgtcacaatcacgcctctg 3115
>gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromosome unknown, complete sequence Length = 209299 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agcagcaaatatatttattt 77 |||||||||||||||||||| Sbjct: 66679 agcagcaaatatatttattt 66698 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,045,215 Number of Sequences: 3902068 Number of extensions: 4045215 Number of successful extensions: 84124 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84012 Number of HSP's gapped (non-prelim): 112 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)