ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KSG7_ARATH (Q39011) Shaggy-related protein kinase eta (EC 2.7.11... 39 0.011
2KSG6_ARATH (Q39010) Shaggy-related protein kinase dzeta (EC 2.7.... 36 0.071
3KSG9_ARATH (Q39012) Shaggy-related protein kinase iota (EC 2.7.1... 35 0.093
4CGAT2_HUMAN (Q8N6G5) Chondroitin beta-1,4-N-acetylgalactosaminyl... 33 0.60
5KSG10_ARATH (Q39019) Shaggy-related protein kinase kappa (EC 2.7... 33 0.60
6UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 32 1.3
7KSG4_ARATH (Q9FVS6) Shaggy-related protein kinase delta (EC 2.7.... 30 3.0
8YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 30 3.0
9CGAT2_MOUSE (Q8C1F4) Chondroitin beta-1,4-N-acetylgalactosaminyl... 30 3.9
10CHIT_CAEEL (Q11174) Probable endochitinase (EC 3.2.1.14) 30 3.9
11GLMM_BARQU (Q6FYQ7) Phosphoglucosamine mutase (EC 5.4.2.10) 30 5.1
12MOBB_BPT4 (P13329) Probable mobile endonuclease B 29 8.7

>KSG7_ARATH (Q39011) Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta)|
           (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)
          Length = 380

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 14/28 (50%), Positives = 24/28 (85%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAFLH 432
           E+A  S +L+N+L+P+H++RQ GL+FL+
Sbjct: 349 EVAGSSPELVNKLIPDHIKRQLGLSFLN 376



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>KSG6_ARATH (Q39010) Shaggy-related protein kinase dzeta (EC 2.7.11.1)|
           (ASK-dzeta)
          Length = 412

 Score = 35.8 bits (81), Expect = 0.071
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAF 438
           EL+  S +LINRL+PEHVRRQ    F
Sbjct: 381 ELSGASPELINRLIPEHVRRQMNGGF 406



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>KSG9_ARATH (Q39012) Shaggy-related protein kinase iota (EC 2.7.11.1)|
           (ASK-iota)
          Length = 407

 Score = 35.4 bits (80), Expect = 0.093
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQ 453
           EL   S +LINRL+PEHVRRQ
Sbjct: 379 ELGGASMELINRLIPEHVRRQ 399



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>CGAT2_HUMAN (Q8N6G5) Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2|
           (EC 2.4.1.174) (GalNAcT-2) (beta4GalNAcT-2)
          Length = 542

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAFLHAGS*ICTRVPSTLHLVVLPWAKGGGLRWRQVR 336
           E+ ++++ +IN +VP   R +A + F+     +C      +HL V+ + K G     +V+
Sbjct: 263 EMIDITRSIINIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEG---LSKVK 319

Query: 335 *SLE*YMPDSNYQKY 291
             LE    +SN+  Y
Sbjct: 320 SILESVTSESNFHNY 334



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>KSG10_ARATH (Q39019) Shaggy-related protein kinase kappa (EC 2.7.11.1)|
           (ASK-kappa) (AtK-1)
          Length = 421

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAFLHA 429
           EL+ +  +++NRLVPEH R+Q     LH+
Sbjct: 393 ELSGIPPEIVNRLVPEHARKQNLFMALHS 421



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
           6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +2

Query: 44  HQEWRTRQLTTYELVQYIKKLLTLTIGQKLKENSVHG-LRLCCFHLLNR----YTNPNDI 208
           HQ W +   T + ++  +K  +++ IG       VH  L + C  L+NR    YT   + 
Sbjct: 547 HQVWESEWETAFNILLRLKDAISMIIGWAETNEEVHNRLMIMCLELMNRMPPVYTKSEED 606

Query: 209 TTSLLNT 229
           T  L  T
Sbjct: 607 TYELTVT 613



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>KSG4_ARATH (Q9FVS6) Shaggy-related protein kinase delta (EC 2.7.11.1)|
           (ASK-delta)
          Length = 420

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAFLHA 429
           EL+ +  + ++RLVPEH R+Q     LH+
Sbjct: 392 ELSGIPPETVDRLVPEHARKQNHFMALHS 420



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>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 407 VPSTLHLVVLPWAKGGGLRWRQV 339
           +P T HL  L WA GGGLR + +
Sbjct: 158 IPGTNHLFKLNWASGGGLREKSI 180



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>CGAT2_MOUSE (Q8C1F4) Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 2|
           (EC 2.4.1.174) (GalNAcT-2) (beta4GalNAcT-2)
          Length = 542

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -3

Query: 515 ELANVSQDLINRLVPEHVRRQAGLAFLHAGS*ICTRVPSTLHLVVLPWAKGGGLRWRQVR 336
           EL ++++ +IN +VP   R +A   F+     +C      +HL V+ + K G     +V+
Sbjct: 263 ELIDITRSVINIIVPLAERTEAFSQFMQNFRDVCIHQDKRIHLTVVYFGKEG---LSKVK 319

Query: 335 *SLE*YMPDSNYQKY 291
             LE    +S++  Y
Sbjct: 320 SILESVSSESDFHNY 334



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>CHIT_CAEEL (Q11174) Probable endochitinase (EC 3.2.1.14)|
          Length = 617

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 16/75 (21%), Positives = 31/75 (41%)
 Frame = -1

Query: 502 FHKTSSTGLYLNMFADKLVSLSCMQGAKYAHGCPQPCTLLFCHXXXXXXXXXXXXXDPWS 323
           +  +++ GL++   + K  S+SC  G +Y+       +L +C               P +
Sbjct: 489 YPNSNNCGLFVLCLSSKSYSMSCPSGLQYS------ASLKYCTTSTASGCSVTTTRAPTT 542

Query: 322 DICQIPIIRSTGRAP 278
                P + +T RAP
Sbjct: 543 TTKSAPTVTTTTRAP 557



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>GLMM_BARQU (Q6FYQ7) Phosphoglucosamine mutase (EC 5.4.2.10)|
          Length = 459

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 429 CMQESETSLSANMFRYKPVDEVL*NI 506
           CMQES++S+S    R++PV ++L N+
Sbjct: 354 CMQESQSSMSHLCKRFEPVPQILKNV 379



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>MOBB_BPT4 (P13329) Probable mobile endonuclease B|
          Length = 264

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 269 VIPRCSTGTSDNWNLAYITP 328
           +IPRC  GT D  NL  +TP
Sbjct: 33  IIPRCMGGTDDKTNLVLLTP 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,200,146
Number of Sequences: 219361
Number of extensions: 1716992
Number of successful extensions: 4253
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4251
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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