Clone Name | rbart35c03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Plus Query: 275 gcacgaatccgtccgcttgcgagcccggccgtcagctcctccacctctaccttcagcacg 334 |||||||||| || || || ||||| || ||||| |||||||| || || |||||||| Sbjct: 5829 gcacgaatcctgccactcgccagcccagcagtcaggtcctccacttccactttcagcaca 5888 Query: 335 tctcggcggttgccaatgtcacctgcatacctgctaacacagtacaccccgacagccatc 394 ||||| ||||||||||||||| |||| |||||||| | || |||||||| || |||||| Sbjct: 5889 tctcgccggttgccaatgtcagctgcgtacctgctggcgcaatacaccccaactgccatc 5948 Query: 395 actgccattccgtagatgttcgtggtgactaggcggaaaggcgtcgaaaccacagcagca 454 || |||||||| ||||| |||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 5949 accgccattccatagatattcgtggttactaggcggaatggggttgaaatcaccgcagca 6008 Query: 455 agaggaccgccaatgatggagacagcctgcccactctgcccga 497 ||||| || || |||||||||| ||||||||||||||||||| Sbjct: 6009 agaggtccaccgatgatggagatggcctgcccactctgcccga 6051
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Plus Query: 275 gcacgaatccgtccgcttgcgagcccggccgtcagctcctccacctctaccttcagcacg 334 |||||||||| || || || ||||| || ||||| |||||||| || || |||||||| Sbjct: 21412746 gcacgaatcctgccactcgccagcccagcagtcaggtcctccacttccactttcagcaca 21412805 Query: 335 tctcggcggttgccaatgtcacctgcatacctgctaacacagtacaccccgacagccatc 394 ||||| ||||||||||||||| |||| |||||||| | || |||||||| || |||||| Sbjct: 21412806 tctcgccggttgccaatgtcagctgcgtacctgctggcgcaatacaccccaactgccatc 21412865 Query: 395 actgccattccgtagatgttcgtggtgactaggcggaaaggcgtcgaaaccacagcagca 454 || |||||||| ||||| |||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 21412866 accgccattccatagatattcgtggttactaggcggaatggggttgaaatcaccgcagca 21412925 Query: 455 agaggaccgccaatgatggagacagcctgcccactctgcccga 497 ||||| || || |||||||||| ||||||||||||||||||| Sbjct: 21412926 agaggtccaccgatgatggagatggcctgcccactctgcccga 21412968
>dbj|AK102786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107M16, full insert sequence Length = 2802 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 275 gcacgaatccgtccgcttgcgagcccggccgtcagctcctccacctctaccttcagcacg 334 |||||||||| || || || ||||| || ||||| |||||||| || || |||||||| Sbjct: 2271 gcacgaatcctgccactcgccagcccagcagtcaggtcctccacttccactttcagcaca 2212 Query: 335 tctcggcggttgccaatgtcacctgcatacctgctaacacagtacaccccgacagccatc 394 ||||| ||||||||||||||| |||| |||||||| | || |||||||| || |||||| Sbjct: 2211 tctcgccggttgccaatgtcagctgcgtacctgctggcgcaatacaccccaactgccatc 2152 Query: 395 actgccattccgtagatgttcgtggtgactaggcggaaaggcgtcgaaaccacagcagca 454 || |||||||| ||||| |||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 2151 accgccattccatagatattcgtggttactaggcggaatggggttgaaatcaccgcagca 2092 Query: 455 agaggaccgccaatgatggagacagcctgcccactctgcccga 497 ||||| || || |||||||||| ||||||||||||||||||| Sbjct: 2091 agaggtccaccgatgatggagatggcctgcccactctgcccga 2049
>dbj|AK072962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P14, full insert sequence Length = 1352 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 275 gcacgaatccgtccgcttgcgagcccggccgtcagctcctccacctctaccttcagcacg 334 |||||||||| || || || ||||| || ||||| |||||||| || || |||||||| Sbjct: 826 gcacgaatcctgccactcgccagcccagcagtcaggtcctccacttccactttcagcaca 767 Query: 335 tctcggcggttgccaatgtcacctgcatacctgctaacacagtacaccccgacagccatc 394 ||||| ||||||||||||||| |||| |||||||| | || |||||||| || |||||| Sbjct: 766 tctcgccggttgccaatgtcagctgcgtacctgctggcgcaatacaccccaactgccatc 707 Query: 395 actgccattccgtagatgttcgtggtgactaggcggaaaggcgtcgaaaccacagcagca 454 || |||||||| ||||| |||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 706 accgccattccatagatattcgtggttactaggcggaatggggttgaaatcaccgcagca 647 Query: 455 agaggaccgccaatgatggagacagcctgcccactctgcccga 497 ||||| || || |||||||||| ||||||||||||||||||| Sbjct: 646 agaggtccaccgatgatggagatggcctgcccactctgcccga 604
>dbj|AK059585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B09, full insert sequence Length = 1209 Score = 165 bits (83), Expect = 2e-37 Identities = 188/223 (84%) Strand = Plus / Minus Query: 275 gcacgaatccgtccgcttgcgagcccggccgtcagctcctccacctctaccttcagcacg 334 |||||||||| || || || ||||| || ||||| |||||||| || || |||||||| Sbjct: 897 gcacgaatcctgccactcgccagcccagcagtcaggtcctccacttccactttcagcaca 838 Query: 335 tctcggcggttgccaatgtcacctgcatacctgctaacacagtacaccccgacagccatc 394 ||||| ||||||||||||||| |||| |||||||| | || |||||||| || |||||| Sbjct: 837 tctcgccggttgccaatgtcagctgcgtacctgctggcgcaatacaccccaactgccatc 778 Query: 395 actgccattccgtagatgttcgtggtgactaggcggaaaggcgtcgaaaccacagcagca 454 || |||||||| ||||| |||||||| ||||||||||| || || |||| ||| |||||| Sbjct: 777 accgccattccatagatattcgtggttactaggcggaatggggttgaaatcaccgcagca 718 Query: 455 agaggaccgccaatgatggagacagcctgcccactctgcccga 497 ||||| || || |||||||||| ||||||||||||||||||| Sbjct: 717 agaggtccaccgatgatggagatggcctgcccactctgcccga 675
>gb|BT017572.1| Zea mays clone EL01N0426H04.c mRNA sequence Length = 1092 Score = 141 bits (71), Expect = 3e-30 Identities = 167/199 (83%) Strand = Plus / Plus Query: 299 ccggccgtcagctcctccacctctaccttcagcacgtctcggcggttgccaatgtcacct 358 ||||||||||| ||||| || || | |||| ||| || |||||||||||||| ||| || Sbjct: 359 ccggccgtcaggtcctcgacttccattttcaccacatcacggcggttgccaatatcagct 418 Query: 359 gcatacctgctaacacagtacaccccgacagccatcactgccattccgtagatgttcgtg 418 ||||||||||| | |||||||||||||| |||||||| ||||| || |||||||||||| Sbjct: 419 gcatacctgctcgcgcagtacaccccgacggccatcaccgccatcccatagatgttcgtg 478 Query: 419 gtgactaggcggaaaggcgtcgaaaccacagcagcaagaggaccgccaatgatggagaca 478 || || | |||||| || ||||| ||||| || || ||||| || || |||||||||| | Sbjct: 479 gtaaccaagcggaatggggtcgagaccaccgcggcgagaggtccaccgatgatggagata 538 Query: 479 gcctgcccactctgcccga 497 |||||||| |||||||||| Sbjct: 539 gcctgcccgctctgcccga 557
>gb|AY111974.1| Zea mays CL5031_1 mRNA sequence Length = 1143 Score = 141 bits (71), Expect = 3e-30 Identities = 167/199 (83%) Strand = Plus / Minus Query: 299 ccggccgtcagctcctccacctctaccttcagcacgtctcggcggttgccaatgtcacct 358 ||||||||||| ||||| || || | |||| ||| || |||||||||||||| ||| || Sbjct: 796 ccggccgtcaggtcctcgacttccattttcaccacatcacggcggttgccaatatcagct 737 Query: 359 gcatacctgctaacacagtacaccccgacagccatcactgccattccgtagatgttcgtg 418 ||||||||||| | |||||||||||||| |||||||| ||||| || |||||||||||| Sbjct: 736 gcatacctgctcgcgcagtacaccccgacggccatcaccgccatcccatagatgttcgtg 677 Query: 419 gtgactaggcggaaaggcgtcgaaaccacagcagcaagaggaccgccaatgatggagaca 478 || || | |||||| || ||||| ||||| || || ||||| || || |||||||||| | Sbjct: 676 gtaaccaagcggaatggggtcgagaccaccgcggcgagaggtccaccgatgatggagata 617 Query: 479 gcctgcccactctgcccga 497 |||||||| |||||||||| Sbjct: 616 gcctgcccgctctgcccga 598
>ref|XM_654728.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2216.2), mRNA Length = 1626 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 313 ctccacctctaccttcagcacgtctcg 339 ||||||||||||| ||||||||||||| Sbjct: 1504 ctccacctctaccctcagcacgtctcg 1478
>emb|CR759753.9| Zebrafish DNA sequence from clone DKEY-11G15 in linkage group 7, complete sequence Length = 203801 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 166586 atggtgatgtatacatctcca 166606
>emb|CR407581.9| Zebrafish DNA sequence from clone DKEY-17A16 in linkage group 8, complete sequence Length = 154966 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 20666 atggtgatgtatacatctcca 20686
>emb|CR790377.18| Zebrafish DNA sequence from clone CH211-260M3 in linkage group 3, complete sequence Length = 147590 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 21378 atggtgatgtatacatctcca 21358
>emb|BX324005.11| Zebrafish DNA sequence from clone DKEY-115F6 in linkage group 13, complete sequence Length = 66154 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 44995 atggtgatgtatacatctcca 44975
>emb|BX649536.8| Zebrafish DNA sequence from clone DKEY-21N8 in linkage group 3, complete sequence Length = 203180 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 12019 atggtgatgtatacatctcca 12039
>emb|CR933841.5| Zebrafish DNA sequence from clone CH211-178N14 in linkage group 19, complete sequence Length = 44619 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 33834 atggtgatgtatacatctcca 33854
>emb|AL844883.15| Zebrafish DNA sequence from clone DKEY-3J22 in linkage group 18, complete sequence Length = 189984 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 16570 atggtgatgtatacatctcca 16590
>emb|BX072581.5| Zebrafish DNA sequence from clone DKEY-14K7 in linkage group 7, complete sequence Length = 239497 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atggtgatgtatacatctcca 176 ||||||||||||||||||||| Sbjct: 202591 atggtgatgtatacatctcca 202611
>ref|XM_482631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1284 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 1027 gccgtcagctcctccacctc 1008
>emb|CR318593.15| Zebrafish DNA sequence from clone CH211-160O17 in linkage group 11, complete sequence Length = 166807 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cacctgcatacctgctaaca 373 |||||||||||||||||||| Sbjct: 76634 cacctgcatacctgctaaca 76653
>ref|XM_449846.1| Candida glabrata CBS138 hypothetical protein (CAGL0M11616g) partial mRNA Length = 14643 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagttttagaaggtttgaac 132 |||||||||||||||||||| Sbjct: 5474 cagttttagaaggtttgaac 5493
>gb|BC046839.1| Xenopus laevis polo-like kinase (Drosophila), mRNA (cDNA clone MGC:52566 IMAGE:4930653), complete cds Length = 2360 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 caatgatggagacagcctgc 484 |||||||||||||||||||| Sbjct: 1480 caatgatggagacagcctgc 1499
>emb|AL512654.9| Human DNA sequence from clone RP11-92P6 on chromosome 10 Contains the 3' end of the HNRPF gene for heterogeneous nuclear ribonucleoprotein F, a novel gene and two CpG islands, complete sequence Length = 45276 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 acagcctgcccactctgccc 495 |||||||||||||||||||| Sbjct: 15362 acagcctgcccactctgccc 15381
>emb|AL133331.27| Human DNA sequence from clone RP11-157E14 on chromosome 20 Contains the 3' end of a novel gene, the 5' end of a novel gene, a novel gene and the 5' end of the SPTLC2L gene for serine palmitoyltransferase long chain base subunit 2-like (aminotransferase 2), complete sequence Length = 85110 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 159 gtgatgtatacatctccatattttacaa 186 ||||||||||||| |||||| ||||||| Sbjct: 70958 gtgatgtatacatttccataatttacaa 70931
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagttttagaaggtttgaac 132 |||||||||||||||||||| Sbjct: 1150710 cagttttagaaggtttgaac 1150691
>gb|AE012436.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 344 of 460 of the complete genome Length = 11689 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 ggcggttgccaatgtcacctgcat 362 |||||||||||||| ||||||||| Sbjct: 2764 ggcggttgccaatgccacctgcat 2741
>gb|DQ377418.1| Uncultured ectomycorrhiza (Thelephoraceae) isolate JLP2443 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 582 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 aaccacagcagcaagaggac 461 |||||||||||||||||||| Sbjct: 133 aaccacagcagcaagaggac 114
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 339 ggcggttgccaatgtcacctgcat 362 |||||||||||||| ||||||||| Sbjct: 1168327 ggcggttgccaatgccacctgcat 1168350
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 21542737 gccgtcagctcctccacctc 21542756
>gb|AF208204.1| Gilia cana internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 626 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agatacaacactcgtcccac 79 |||||||||||||||||||| Sbjct: 69 agatacaacactcgtcccac 50
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0528B09 Length = 156897 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 146732 gccgtcagctcctccacctc 146751
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 2911 gccgtcagctcctccacctc 2930
>dbj|AK073494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F17, full insert sequence Length = 1285 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 1028 gccgtcagctcctccacctc 1009
>dbj|AK066840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088M11, full insert sequence Length = 865 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gccgtcagctcctccacctc 321 |||||||||||||||||||| Sbjct: 643 gccgtcagctcctccacctc 624
>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18, complete sequence Length = 188895 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 atggtgatggtgatgtatac 169 |||||||||||||||||||| Sbjct: 129271 atggtgatggtgatgtatac 129252
>gb|U58205.1|XLU58205 Xenopus laevis Plx1 mRNA, complete cds Length = 2381 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 caatgatggagacagcctgc 484 |||||||||||||||||||| Sbjct: 1481 caatgatggagacagcctgc 1500
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cggccgtcagctcctccacc 319 |||||||||||||||||||| Sbjct: 744832 cggccgtcagctcctccacc 744813
>gb|AC171205.1| Mus musculus BAC clone RP23-441H20 from chromosome 16, complete sequence Length = 212822 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ccgtcagctcctccacctct 322 |||||||||||||||||||| Sbjct: 66225 ccgtcagctcctccacctct 66206
>emb|AL671909.8| Mouse DNA sequence from clone RP23-446F20 on chromosome 4, complete sequence Length = 85802 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 tacatctccatattttacaa 186 |||||||||||||||||||| Sbjct: 83800 tacatctccatattttacaa 83781 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,711,576 Number of Sequences: 3902068 Number of extensions: 3711576 Number of successful extensions: 79845 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79679 Number of HSP's gapped (non-prelim): 166 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)