ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.39
2gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.5
3gb|AC146610.4| Mus musculus BAC clone RP23-68E7 from chromosome ... 42 1.5
4gb|AC122523.5| Mus musculus BAC clone RP24-492N18 from chromosom... 42 1.5
5emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.5
6emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.5
7gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 1.5
8ref|XM_473723.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
9ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC5... 40 6.0
10gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
11ref|NM_028735.1| Mus musculus tetratricopeptide repeat domain 21... 40 6.0
12gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, co... 40 6.0
13gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.0
14gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome ... 40 6.0
15gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, comple... 40 6.0
16gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
17emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in ... 40 6.0
18emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
19emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
20dbj|AK133304.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.0
21dbj|AK163163.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 6.0
22ref|XM_683108.1| PREDICTED: Danio rerio similar to high-mobility... 40 6.0
23dbj|AK015017.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.0
24dbj|AK029952.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.0
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
27gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 o... 40 6.0
28gb|AC124446.3| Mus musculus BAC clone RP24-201I19 from chromosom... 40 6.0
29dbj|AK120361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
30ref|XM_313005.2| Anopheles gambiae str. PEST ENSANGP00000020427 ... 40 6.0
31dbj|AK107890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
32dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
33dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
34dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
35gb|AY105026.1| Zea mays PCO062519 mRNA sequence 40 6.0
36emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.0
37emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 40 6.0
38gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 6.0
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
40emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
41emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chr... 40 6.0 
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 275     gttcttccacctcgtcgacctcgttctcgc 304
               ||||||| ||||||||||||| ||||||||
Sbjct: 2760563 gttcttcgacctcgtcgaccttgttctcgc 2760592
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 308     catgcgcgtggtggtggtgga 328
               |||||||||||||||||||||
Sbjct: 2074901 catgcgcgtggtggtggtgga 2074921
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>gb|AC146610.4| Mus musculus BAC clone RP23-68E7 from chromosome 7, complete sequence
          Length = 218291

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   ggttcaggaggcccttgaacc 178
             |||||||||||||||||||||
Sbjct: 52487 ggttcaggaggcccttgaacc 52467
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>gb|AC122523.5| Mus musculus BAC clone RP24-492N18 from chromosome 7, complete sequence
          Length = 163841

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    ggttcaggaggcccttgaacc 178
              |||||||||||||||||||||
Sbjct: 131891 ggttcaggaggcccttgaacc 131871
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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    catgcgcgtggtggtggtgga 328
              |||||||||||||||||||||
Sbjct: 346419 catgcgcgtggtggtggtgga 346439
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>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14
          Length = 291050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 308    catgcgcgtggtggtggtgga 328
              |||||||||||||||||||||
Sbjct: 154028 catgcgcgtggtggtggtgga 154048
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     gattaaccaaagtaattaaac 107
              |||||||||||||||||||||
Sbjct: 320411 gattaaccaaagtaattaaac 320391
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>ref|XM_473723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 216 gcggcggccgccatggctgaagcc 239
           |||| |||||||||||||||||||
Sbjct: 63  gcggtggccgccatggctgaagcc 86
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>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA
          Length = 1754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  cagtacagggaacagattaa 92
           ||||||||||||||||||||
Sbjct: 533 cagtacagggaacagattaa 552
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ggcggcggccgccatggctg 234
             ||||||||||||||||||||
Sbjct: 29333 ggcggcggccgccatggctg 29314
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>ref|NM_028735.1| Mus musculus tetratricopeptide repeat domain 21A (ttc21a), mRNA
          Length = 4187

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggaacagcttcatcttcagg 354
           ||||||||||||||||||||
Sbjct: 795 ggaacagcttcatcttcagg 776
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>gb|AC124662.10| Mus musculus chromosome 9, clone RP24-409K22, complete sequence
          Length = 235471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   ggaacagcttcatcttcagg 354
             ||||||||||||||||||||
Sbjct: 36685 ggaacagcttcatcttcagg 36704
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    gcgccggccggcggtacgta 142
              ||||||||||||||||||||
Sbjct: 472526 gcgccggccggcggtacgta 472507
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>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 418    tggccaaaatggtggcggtggtgg 441
              ||||||||||||||| ||||||||
Sbjct: 120895 tggccaaaatggtggtggtggtgg 120872
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>gb|AC117245.3| Mus musculus BAC clone RP24-233B16 from 9, complete sequence
          Length = 177775

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    ggaacagcttcatcttcagg 354
              ||||||||||||||||||||
Sbjct: 153438 ggaacagcttcatcttcagg 153457
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    ggcggcggccgccatggctg 234
              ||||||||||||||||||||
Sbjct: 129150 ggcggcggccgccatggctg 129131
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>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3,
             complete sequence
          Length = 111124

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   agcttcatcttcaggccttc 359
             ||||||||||||||||||||
Sbjct: 42077 agcttcatcttcaggccttc 42058
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
            complete sequence
          Length = 179644

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  gcggcggccgccatggctgaagcc 239
            |||| |||||||||||||||||||
Sbjct: 6363 gcggtggccgccatggctgaagcc 6340
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>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01,
             complete sequence
          Length = 133331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ggcggcggccgccatggctg 234
             ||||||||||||||||||||
Sbjct: 92328 ggcggcggccgccatggctg 92309
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>dbj|AK133304.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932431P04 product:Hypothetical
           tetratricopeptide repeat homolog [Mus musculus], full
           insert sequence
          Length = 4042

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggaacagcttcatcttcagg 354
           ||||||||||||||||||||
Sbjct: 763 ggaacagcttcatcttcagg 744
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>dbj|AK163163.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730057N22 product:Hypothetical
           tetratricopeptide repeat homolog [Mus musculus], full
           insert sequence
          Length = 3328

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggaacagcttcatcttcagg 354
           ||||||||||||||||||||
Sbjct: 644 ggaacagcttcatcttcagg 625
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>ref|XM_683108.1| PREDICTED: Danio rerio similar to high-mobility group protein
           2-like 1 isoform a (LOC559742), mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 agcttcatcttcaggccttc 359
           ||||||||||||||||||||
Sbjct: 662 agcttcatcttcaggccttc 643
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>dbj|AK015017.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921538N17 product:hypothetical TPR
           repeat containing protein, full insert sequence
          Length = 4126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggaacagcttcatcttcagg 354
           ||||||||||||||||||||
Sbjct: 751 ggaacagcttcatcttcagg 732
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>dbj|AK029952.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932410I19 product:hypothetical
           Tetratricopeptide repeat (TPR) structure containing
           protein, full insert sequence
          Length = 4187

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggaacagcttcatcttcagg 354
           ||||||||||||||||||||
Sbjct: 795 ggaacagcttcatcttcagg 776
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 215      ggcggcggccgccatggctg 234
                ||||||||||||||||||||
Sbjct: 34786769 ggcggcggccgccatggctg 34786750



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 216      gcggcggccgccatggctgaagcc 239
                |||| |||||||||||||||||||
Sbjct: 29869611 gcggtggccgccatggctgaagcc 29869588
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 215      ggcggcggccgccatggctg 234
                ||||||||||||||||||||
Sbjct: 26327501 ggcggcggccgccatggctg 26327482
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>gb|AE004672.1| Pseudomonas aeruginosa PAO1, section 233 of 529 of the complete
            genome
          Length = 10855

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  catgcgcgtggtggtggtgg 327
            ||||||||||||||||||||
Sbjct: 1125 catgcgcgtggtggtggtgg 1106
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>gb|AC124446.3| Mus musculus BAC clone RP24-201I19 from chromosome 13, complete
             sequence
          Length = 168981

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 418   tggccaaaatggtggcggtggtgg 441
             ||||||||||||||| ||||||||
Sbjct: 19436 tggccaaaatggtggtggtggtgg 19413
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>dbj|AK120361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067O03, full
           insert sequence
          Length = 3399

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 ggcggcggccgccatggctg 234
           ||||||||||||||||||||
Sbjct: 135 ggcggcggccgccatggctg 116
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>ref|XM_313005.2| Anopheles gambiae str. PEST ENSANGP00000020427
           (ENSANGG00000017938), partial mRNA
          Length = 573

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 336 gaacagcttcatcttcaggc 355
           ||||||||||||||||||||
Sbjct: 78  gaacagcttcatcttcaggc 59
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>dbj|AK107890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E06, full
           insert sequence
          Length = 833

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 ggcggcggccgccatggctg 234
           ||||||||||||||||||||
Sbjct: 126 ggcggcggccgccatggctg 107
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>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full
            insert sequence
          Length = 2386

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  ggcggcggccgccatggctg 234
            ||||||||||||||||||||
Sbjct: 2100 ggcggcggccgccatggctg 2119
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>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full
           insert sequence
          Length = 1300

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 215 ggcggcggccgccatggctg 234
           ||||||||||||||||||||
Sbjct: 57  ggcggcggccgccatggctg 38
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>dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full
           insert sequence
          Length = 1474

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 216 gcggcggccgccatggctgaagcc 239
           |||| |||||||||||||||||||
Sbjct: 327 gcggtggccgccatggctgaagcc 350
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>gb|AY105026.1| Zea mays PCO062519 mRNA sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 149  tctagaatcggttcaggaggcccttgaaccag 180
            ||||||| ||||||| ||||||||||| ||||
Sbjct: 1086 tctagaaccggttcatgaggcccttgatccag 1055
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>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete
             sequence
          Length = 110682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ggcggcggccgccatggctg 234
             ||||||||||||||||||||
Sbjct: 31971 ggcggcggccgccatggctg 31952
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>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05
          Length = 1754

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  cagtacagggaacagattaa 92
           ||||||||||||||||||||
Sbjct: 533 cagtacagggaacagattaa 552
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 315    gtggtggtggtggaaacgtcggaa 338
              ||||||||||||||||| ||||||
Sbjct: 490189 gtggtggtggtggaaacttcggaa 490166
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 215      ggcggcggccgccatggctg 234
                ||||||||||||||||||||
Sbjct: 26641759 ggcggcggccgccatggctg 26641740
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>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06,
              complete sequence
          Length = 178552

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 216    gcggcggccgccatggctgaagcc 239
              |||| |||||||||||||||||||
Sbjct: 150537 gcggtggccgccatggctgaagcc 150514
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>emb|CT027681.7| Mouse DNA sequence from clone RP24-330H24 on chromosome 16, complete
             sequence
          Length = 190475

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   cctcgccaagcttcctagcc 273
             ||||||||||||||||||||
Sbjct: 20391 cctcgccaagcttcctagcc 20372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,426,264
Number of Sequences: 3902068
Number of extensions: 3426264
Number of successful extensions: 84645
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84199
Number of HSP's gapped (non-prelim): 446
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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