Clone Name | rbart35b08 |
---|---|
Clone Library Name | barley_pub |
>gb|AY105155.1| Zea mays PCO107552 mRNA sequence Length = 1776 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Minus Query: 266 tcagccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgcc 325 ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| Sbjct: 1507 tcagccctcctcgccgaactccttcgtgaacctctcgtgcacctccaggtccttcttgct 1448 Query: 326 gacagtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385 || ||||| |||||||||| |||||||||||||| || | ||||||| ||||| || Sbjct: 1447 aaccgtcggcctctgcctcgacaggaccttctcgaagtccgccgtcgagatagggggcgg 1388 Query: 386 gagaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacc 445 ||||||| | || ||||||||||||||||| |||||||| ||||||||||| || || Sbjct: 1387 aagaatcttcgcagcgaggcctttggatgcaagctcctgcatggtggtctgcacggcgcc 1328 Query: 446 tggttgcttcgatccacagggcatccacatgtcacc 481 |||||||||| |||||| ||||||||||||||||| Sbjct: 1327 cggttgcttcggtccacatggcatccacatgtcacc 1292
>ref|XM_550086.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 806 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 747 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| || Sbjct: 746 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 687 Query: 390 atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449 |||| || |||||||| |||||||| || |||||||| || || || || ||||| | | Sbjct: 686 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 627 Query: 450 tgcttcgatccacagggcatccacatgtcaccatc 484 ||||| | |||||| ||||||||||| |||||||| Sbjct: 626 tgctttggtccacaaggcatccacatatcaccatc 592
>dbj|AK067644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F09, full insert sequence Length = 1755 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 1490 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 1431 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| || Sbjct: 1430 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 1371 Query: 390 atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449 |||| || |||||||| |||||||| || |||||||| || || || || ||||| | | Sbjct: 1370 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 1311 Query: 450 tgcttcgatccacagggcatccacatgtcaccatc 484 ||||| | |||||| ||||||||||| |||||||| Sbjct: 1310 tgctttggtccacaaggcatccacatatcaccatc 1276
>dbj|AK062139.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F12, full insert sequence Length = 1160 Score = 133 bits (67), Expect = 6e-28 Identities = 178/215 (82%) Strand = Plus / Minus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 909 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 850 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| || Sbjct: 849 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 790 Query: 390 atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449 |||| || |||||||| |||||||| || |||||||| || || || || ||||| | | Sbjct: 789 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 730 Query: 450 tgcttcgatccacagggcatccacatgtcaccatc 484 ||||| | |||||| ||||||||||| |||||||| Sbjct: 729 tgctttggtccacaaggcatccacatatcaccatc 695
>gb|BT016886.1| Zea mays clone Contig719 mRNA sequence Length = 1304 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Plus Query: 402 aggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgatcca 461 ||||||||||||||||| |||||||| ||||||||||| || || |||||||||| |||| Sbjct: 195 aggcctttggatgcaagctcctgcatggtggtctgcacggcgcccggttgcttcggtcca 254 Query: 462 cagggcatccacatgtcacc 481 || ||||||||||||||||| Sbjct: 255 catggcatccacatgtcacc 274
>gb|AF499028.1| Oryza sativa (japonica cultivar-group) AAA-ATPase-like protein mRNA, complete cds Length = 1465 Score = 87.7 bits (44), Expect = 3e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 1380 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 1321 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| Sbjct: 1320 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 1265 Score = 60.0 bits (30), Expect = 7e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 399 gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458 |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | | Sbjct: 1169 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 1110 Query: 459 ccacagggcatccacatgtcaccatc 484 ||||| ||||||||||| |||||||| Sbjct: 1109 ccacaaggcatccacatatcaccatc 1084
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 3e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 2214927 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 2214986 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| Sbjct: 2214987 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 2215042 Score = 60.0 bits (30), Expect = 7e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 399 gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458 |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | | Sbjct: 2215138 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 2215197 Query: 459 ccacagggcatccacatgtcaccatc 484 ||||| ||||||||||| |||||||| Sbjct: 2215198 ccacaaggcatccacatatcaccatc 2215223 Score = 42.1 bits (21), Expect = 1.7 Identities = 72/89 (80%) Strand = Plus / Plus Query: 291 gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350 ||||||||||| | |||| | || || ||||||| || || |||||||||||| ||||| Sbjct: 2225632 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 2225691 Query: 351 accttctcgaaatcgctcttcgagattgg 379 || | |||||||| |||| |||||||| Sbjct: 2225692 acttcatcgaaatctatctttgagattgg 2225720
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 87.7 bits (44), Expect = 3e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329 |||||||||||||| || || || ||| | ||||||||||||| ||| ||||||| || Sbjct: 136039 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 136098 Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385 |||||||||||||| |||||||| ||||||||||| || | |||||||| ||||| Sbjct: 136099 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 136154 Score = 60.0 bits (30), Expect = 7e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 399 gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458 |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | | Sbjct: 136250 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 136309 Query: 459 ccacagggcatccacatgtcaccatc 484 ||||| ||||||||||| |||||||| Sbjct: 136310 ccacaaggcatccacatatcaccatc 136335
>gb|DQ444282.1| Gossypium hirsutum suppressor of K+ transport growth defect-like protein (SKD1) mRNA, complete cds Length = 1801 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 387 agaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacct 446 |||||||||| ||||| ||||||| ||| | |||||||| ||| | || ||| ||||| Sbjct: 1400 agaatctgtgctgcaagtcctttggctgccaattcctgcatggtgatttggacaacacct 1341 Query: 447 ggttgcttcgatccacagggcatccacatgtca 479 |||||||| | |||||| ||||||||||||||| Sbjct: 1340 ggttgcttgggtccacatggcatccacatgtca 1308
>gb|AF419850.1|AF419850 Musa acuminata suppressor of K+ transport growth defect-like protein (SDK1) mRNA, partial cds Length = 1020 Score = 58.0 bits (29), Expect = 3e-05 Identities = 164/209 (78%) Strand = Plus / Minus Query: 268 agccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccga 327 ||||||| || ||||||||||| ||||| |||||||||| || ||||| |||| || Sbjct: 877 agccctcttccccaaactcctttgtgaatctctcgtgcacttcgaggtcggctttgctga 818 Query: 328 cagtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtggga 387 | || || |||||||| || | || || ||||||||| || | | ||| || ||||||| Sbjct: 817 ctgtgggcctctgcctggccaaaactttttcgaaatcgttccttgtgatgggtggtggga 758 Query: 388 gaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctg 447 | |||| | | |||| ||||| | ||||| ||||||| |||||| || ||||| |||| Sbjct: 757 ggatcttagcgccaagacctttcgcagcaagctcctgcaacgtggtttgaacagctcctg 698 Query: 448 gttgcttcgatccacagggcatccacatg 476 |||| || | ||||||||||| ||||||| Sbjct: 697 gttgtttaggtccacagggcacccacatg 669
>gb|AF165422.2| Mesembryanthemum crystallinum salt-induced AAA-Type ATPase (SKD1) mRNA, complete cds Length = 1566 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 413 tgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgatccacagggcatcca 472 ||||||||||||||| || | || ||||||||||||||| | | ||||||||||| ||| Sbjct: 1158 tgcaagatcctgcatggttatttggacagcacctggttgccttggtccacagggcaccca 1099 Query: 473 ca 474 || Sbjct: 1098 ca 1097
>gb|BT012934.1| Lycopersicon esculentum clone 114097R, mRNA sequence Length = 1956 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 414 gcaagatcctgcatcgtggtctgcacagcacctggttgcttcg 456 ||||| |||||||| || |||||||||||||| ||||||||| Sbjct: 1544 gcaagttcctgcatagttgtctgcacagcaccccgttgcttcg 1502
>ref|XM_550087.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 42.1 bits (21), Expect = 1.7 Identities = 72/89 (80%) Strand = Plus / Minus Query: 291 gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350 ||||||||||| | |||| | || || ||||||| || || |||||||||||| ||||| Sbjct: 1214 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 1155 Query: 351 accttctcgaaatcgctcttcgagattgg 379 || | |||||||| |||| |||||||| Sbjct: 1154 acttcatcgaaatctatctttgagattgg 1126
>ref|NM_001037542.1| Mus musculus heat shock protein 14 (Hspa14), transcript variant 2, mRNA Length = 4369 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tggtctgcacagcacctggtt 450 ||||||||||||||||||||| Sbjct: 4306 tggtctgcacagcacctggtt 4286
>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains GSSs, complete sequence Length = 119008 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 catgtcaccatctgtcttgaa 493 ||||||||||||||||||||| Sbjct: 114987 catgtcaccatctgtcttgaa 115007
>emb|AL079339.11|HSJ906P16 Human DNA sequence from clone RP5-906P16 on chromosome 20q13.12-13.2 Contains ESTs, STSs and GSSs, complete sequence Length = 86719 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 60 gaaatagagttgacaacagaggcac 84 |||||||||||| |||||||||||| Sbjct: 72332 gaaatagagttgccaacagaggcac 72356
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 aactccttggtgaacttctcg 302 ||||||||||||||||||||| Sbjct: 1120093 aactccttggtgaacttctcg 1120073
>dbj|AK031579.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030456D20 product:heat shock protein, 70 kDa 4, full insert sequence Length = 4314 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 tggtctgcacagcacctggtt 450 ||||||||||||||||||||| Sbjct: 4251 tggtctgcacagcacctggtt 4231
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 42.1 bits (21), Expect = 1.7 Identities = 72/89 (80%) Strand = Plus / Plus Query: 291 gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350 ||||||||||| | |||| | || || ||||||| || || |||||||||||| ||||| Sbjct: 9216 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 9275 Query: 351 accttctcgaaatcgctcttcgagattgg 379 || | |||||||| |||| |||||||| Sbjct: 9276 acttcatcgaaatctatctttgagattgg 9304
>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176343 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 cttaatacacttgcagaaaat 36 ||||||||||||||||||||| Sbjct: 73098 cttaatacacttgcagaaaat 73078
>emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on chromosome 2, complete sequence Length = 230116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 tggtctgcacagcacctggtt 450 ||||||||||||||||||||| Sbjct: 215394 tggtctgcacagcacctggtt 215414
>gb|AC154808.2| Mus musculus BAC clone RP24-512K19 from chromosome 13, complete sequence Length = 187080 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ttaagcacagtaagggctac 146 |||||||||||||||||||| Sbjct: 91895 ttaagcacagtaagggctac 91876
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgcggctgtgcatgggtcga 240 |||||||||||||||||||| Sbjct: 1976887 tgcggctgtgcatgggtcga 1976906
>ref|XM_756646.1| Ustilago maydis 521 hypothetical protein (UM05592.1) partial mRNA Length = 4761 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 acatgtcaccatctgtcttg 491 |||||||||||||||||||| Sbjct: 4321 acatgtcaccatctgtcttg 4302
>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence Length = 261151 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 catacgttaagcacagtaag 140 |||||||||||||||||||| Sbjct: 75253 catacgttaagcacagtaag 75272
>gb|AC090597.9| Homo sapiens chromosome 11, clone RP11-541L7, complete sequence Length = 160210 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aataatcaattattccttaa 20 |||||||||||||||||||| Sbjct: 103137 aataatcaattattccttaa 103156
>emb|AL133473.5| Human DNA sequence from clone RP1-236A3 on chromosome 6 Contains the 3' end of the gene for phenylalanine-tRNA synthetase (FARS1), complete sequence Length = 57423 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 ccacagggcatccacatgtc 478 |||||||||||||||||||| Sbjct: 46916 ccacagggcatccacatgtc 46935
>gb|AC144561.8| Homo sapiens 3 BAC RP11-628C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 35869 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 aataatcaattattccttaataca 24 ||||||||||||| |||||||||| Sbjct: 23281 aataatcaattataccttaataca 23258
>dbj|AK056714.1| Homo sapiens cDNA FLJ32152 fis, clone PLACE5000178, highly similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-) Length = 3276 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 atccacagggcatccacatg 476 |||||||||||||||||||| Sbjct: 2188 atccacagggcatccacatg 2207
>dbj|AK055814.1| Homo sapiens cDNA FLJ31252 fis, clone KIDNE2005424, highly similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-) Length = 3032 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 atccacagggcatccacatg 476 |||||||||||||||||||| Sbjct: 1391 atccacagggcatccacatg 1410
>gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complete sequence Length = 197498 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 catacgttaagcacagtaag 140 |||||||||||||||||||| Sbjct: 109221 catacgttaagcacagtaag 109240
>emb|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-894P9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191563 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 atccacagggcatccacatg 476 |||||||||||||||||||| Sbjct: 179161 atccacagggcatccacatg 179142
>emb|AL133367.4|CNS01DUS Human chromosome 14 DNA sequence BAC R-600F24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181652 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 atccacagggcatccacatg 476 |||||||||||||||||||| Sbjct: 34104 atccacagggcatccacatg 34085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,876,073 Number of Sequences: 3902068 Number of extensions: 3876073 Number of successful extensions: 70620 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70513 Number of HSP's gapped (non-prelim): 106 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)