ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY105155.1| Zea mays PCO107552 mRNA sequence 198 1e-47
2ref|XM_550086.1| Oryza sativa (japonica cultivar-group), mRNA 133 6e-28
3dbj|AK067644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
4dbj|AK062139.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
5gb|BT016886.1| Zea mays clone Contig719 mRNA sequence 103 5e-19
6gb|AF499028.1| Oryza sativa (japonica cultivar-group) AAA-ATPase... 88 3e-14
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
9gb|DQ444282.1| Gossypium hirsutum suppressor of K+ transport gro... 66 1e-07
10gb|AF419850.1|AF419850 Musa acuminata suppressor of K+ transport... 58 3e-05
11gb|AF165422.2| Mesembryanthemum crystallinum salt-induced AAA-Ty... 52 0.002
12gb|BT012934.1| Lycopersicon esculentum clone 114097R, mRNA sequence 46 0.11
13ref|XM_550087.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
14ref|NM_001037542.1| Mus musculus heat shock protein 14 (Hspa14),... 42 1.7
15emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 o... 42 1.7
16emb|AL079339.11|HSJ906P16 Human DNA sequence from clone RP5-906P... 42 1.7
17gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 42 1.7
18dbj|AK031579.1| Mus musculus 13 days embryo male testis cDNA, RI... 42 1.7
19dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
20emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-5... 42 1.7
21emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on ch... 42 1.7
22gb|AC154808.2| Mus musculus BAC clone RP24-512K19 from chromosom... 40 6.7
23gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.7
24ref|XM_756646.1| Ustilago maydis 521 hypothetical protein (UM055... 40 6.7
25gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p2... 40 6.7
26gb|AC090597.9| Homo sapiens chromosome 11, clone RP11-541L7, com... 40 6.7
27emb|AL133473.5| Human DNA sequence from clone RP1-236A3 on chrom... 40 6.7
28gb|AC144561.8| Homo sapiens 3 BAC RP11-628C23 (Roswell Park Canc... 40 6.7
29dbj|AK056714.1| Homo sapiens cDNA FLJ32152 fis, clone PLACE50001... 40 6.7
30dbj|AK055814.1| Homo sapiens cDNA FLJ31252 fis, clone KIDNE20054... 40 6.7
31gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complet... 40 6.7
32emb|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-8... 40 6.7
33emb|AL133367.4|CNS01DUS Human chromosome 14 DNA sequence BAC R-6... 40 6.7

>gb|AY105155.1| Zea mays PCO107552 mRNA sequence
          Length = 1776

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Minus

                                                                        
Query: 266  tcagccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgcc 325
            ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| 
Sbjct: 1507 tcagccctcctcgccgaactccttcgtgaacctctcgtgcacctccaggtccttcttgct 1448

                                                                        
Query: 326  gacagtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385
             || ||||| ||||||||||  |||||||||||||| ||   | ||||||| ||||| ||
Sbjct: 1447 aaccgtcggcctctgcctcgacaggaccttctcgaagtccgccgtcgagatagggggcgg 1388

                                                                        
Query: 386  gagaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacc 445
             |||||||  |  || ||||||||||||||||| |||||||| ||||||||||| || ||
Sbjct: 1387 aagaatcttcgcagcgaggcctttggatgcaagctcctgcatggtggtctgcacggcgcc 1328

                                                
Query: 446  tggttgcttcgatccacagggcatccacatgtcacc 481
             |||||||||| |||||| |||||||||||||||||
Sbjct: 1327 cggttgcttcggtccacatggcatccacatgtcacc 1292



to top

>ref|XM_550086.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1071

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Minus

                                                                       
Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
           |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 806 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 747

                                                                       
Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389
           |||||||||||||| |||||||| |||||||||||  || | |||||||| ||||| || 
Sbjct: 746 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 687

                                                                       
Query: 390 atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449
           |||| ||  |||||||| |||||||| || |||||||| || || || || ||||| | |
Sbjct: 686 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 627

                                              
Query: 450 tgcttcgatccacagggcatccacatgtcaccatc 484
           ||||| | |||||| ||||||||||| ||||||||
Sbjct: 626 tgctttggtccacaaggcatccacatatcaccatc 592



to top

>dbj|AK067644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F09, full
            insert sequence
          Length = 1755

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Minus

                                                                        
Query: 270  ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
            |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 1490 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 1431

                                                                        
Query: 330  gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389
            |||||||||||||| |||||||| |||||||||||  || | |||||||| ||||| || 
Sbjct: 1430 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 1371

                                                                        
Query: 390  atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449
            |||| ||  |||||||| |||||||| || |||||||| || || || || ||||| | |
Sbjct: 1370 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 1311

                                               
Query: 450  tgcttcgatccacagggcatccacatgtcaccatc 484
            ||||| | |||||| ||||||||||| ||||||||
Sbjct: 1310 tgctttggtccacaaggcatccacatatcaccatc 1276



to top

>dbj|AK062139.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F12, full
           insert sequence
          Length = 1160

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Minus

                                                                       
Query: 270 ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
           |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 909 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 850

                                                                       
Query: 330 gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgggaga 389
           |||||||||||||| |||||||| |||||||||||  || | |||||||| ||||| || 
Sbjct: 849 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtggaagg 790

                                                                       
Query: 390 atctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggt 449
           |||| ||  |||||||| |||||||| || |||||||| || || || || ||||| | |
Sbjct: 789 atctttgctgcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagat 730

                                              
Query: 450 tgcttcgatccacagggcatccacatgtcaccatc 484
           ||||| | |||||| ||||||||||| ||||||||
Sbjct: 729 tgctttggtccacaaggcatccacatatcaccatc 695



to top

>gb|BT016886.1| Zea mays clone Contig719 mRNA sequence
          Length = 1304

 Score =  103 bits (52), Expect = 5e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 402 aggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgatcca 461
           ||||||||||||||||| |||||||| ||||||||||| || || |||||||||| ||||
Sbjct: 195 aggcctttggatgcaagctcctgcatggtggtctgcacggcgcccggttgcttcggtcca 254

                               
Query: 462 cagggcatccacatgtcacc 481
           || |||||||||||||||||
Sbjct: 255 catggcatccacatgtcacc 274



to top

>gb|AF499028.1| Oryza sativa (japonica cultivar-group) AAA-ATPase-like protein mRNA,
            complete cds
          Length = 1465

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                        
Query: 270  ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
            |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 1380 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 1321

                                                                    
Query: 330  gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385
            |||||||||||||| |||||||| |||||||||||  || | |||||||| |||||
Sbjct: 1320 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 1265



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                        
Query: 399  gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458
            |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | |
Sbjct: 1169 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 1110

                                      
Query: 459  ccacagggcatccacatgtcaccatc 484
            ||||| ||||||||||| ||||||||
Sbjct: 1109 ccacaaggcatccacatatcaccatc 1084



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                           
Query: 270     ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
               |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 2214927 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 2214986

                                                                       
Query: 330     gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385
               |||||||||||||| |||||||| |||||||||||  || | |||||||| |||||
Sbjct: 2214987 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 2215042



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                           
Query: 399     gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458
               |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | |
Sbjct: 2215138 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 2215197

                                         
Query: 459     ccacagggcatccacatgtcaccatc 484
               ||||| ||||||||||| ||||||||
Sbjct: 2215198 ccacaaggcatccacatatcaccatc 2215223



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 72/89 (80%)
 Strand = Plus / Plus

                                                                           
Query: 291     gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350
               ||||||||||| | |||| | || || |||||||  || || |||||||||||| |||||
Sbjct: 2225632 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 2225691

                                            
Query: 351     accttctcgaaatcgctcttcgagattgg 379
               || |  ||||||||  |||| ||||||||
Sbjct: 2225692 acttcatcgaaatctatctttgagattgg 2225720



to top

>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480E02
          Length = 141862

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                          
Query: 270    ccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccgaca 329
              |||||||||||||| || || || ||| | ||||||||||||| ||| |||||||  || 
Sbjct: 136039 ccctcctcgccaaattcttttgtaaacctttcgtgcacctccaagtctttcttgctcact 136098

                                                                      
Query: 330    gtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtgg 385
              |||||||||||||| |||||||| |||||||||||  || | |||||||| |||||
Sbjct: 136099 gtcggtctctgcctggcgaggactttctcgaaatctgtccttgagattggtggtgg 136154



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                          
Query: 399    gcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgat 458
              |||||||| |||||||| || |||||||| || || || || ||||| | |||||| | |
Sbjct: 136250 gcaaggcccttggatgcgagctcctgcatggttgtttgtacggcaccagattgctttggt 136309

                                        
Query: 459    ccacagggcatccacatgtcaccatc 484
              ||||| ||||||||||| ||||||||
Sbjct: 136310 ccacaaggcatccacatatcaccatc 136335



to top

>gb|DQ444282.1| Gossypium hirsutum suppressor of K+ transport growth defect-like
            protein (SKD1) mRNA, complete cds
          Length = 1801

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                        
Query: 387  agaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacct 446
            ||||||||||  ||||| ||||||| ||| |  |||||||| ||| | || ||| |||||
Sbjct: 1400 agaatctgtgctgcaagtcctttggctgccaattcctgcatggtgatttggacaacacct 1341

                                             
Query: 447  ggttgcttcgatccacagggcatccacatgtca 479
            |||||||| | |||||| |||||||||||||||
Sbjct: 1340 ggttgcttgggtccacatggcatccacatgtca 1308



to top

>gb|AF419850.1|AF419850 Musa acuminata suppressor of K+ transport growth defect-like
           protein (SDK1) mRNA, partial cds
          Length = 1020

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 164/209 (78%)
 Strand = Plus / Minus

                                                                       
Query: 268 agccctcctcgccaaactccttggtgaacttctcgtgcacctccaggtccttcttgccga 327
           ||||||| || ||||||||||| |||||  |||||||||| || |||||    |||| ||
Sbjct: 877 agccctcttccccaaactcctttgtgaatctctcgtgcacttcgaggtcggctttgctga 818

                                                                       
Query: 328 cagtcggtctctgcctcgcgaggaccttctcgaaatcgctcttcgagattgggggtggga 387
           | || || |||||||| || |  || || ||||||||| || | | ||| || |||||||
Sbjct: 817 ctgtgggcctctgcctggccaaaactttttcgaaatcgttccttgtgatgggtggtggga 758

                                                                       
Query: 388 gaatctgtgaggcaaggcctttggatgcaagatcctgcatcgtggtctgcacagcacctg 447
           | ||||  | | |||| ||||| |  ||||| ||||||| |||||| || ||||| ||||
Sbjct: 757 ggatcttagcgccaagacctttcgcagcaagctcctgcaacgtggtttgaacagctcctg 698

                                        
Query: 448 gttgcttcgatccacagggcatccacatg 476
           |||| || | ||||||||||| |||||||
Sbjct: 697 gttgtttaggtccacagggcacccacatg 669



to top

>gb|AF165422.2| Mesembryanthemum crystallinum salt-induced AAA-Type ATPase (SKD1)
            mRNA, complete cds
          Length = 1566

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 413  tgcaagatcctgcatcgtggtctgcacagcacctggttgcttcgatccacagggcatcca 472
            ||||||||||||||| ||  | || ||||||||||||||| | | ||||||||||| |||
Sbjct: 1158 tgcaagatcctgcatggttatttggacagcacctggttgccttggtccacagggcaccca 1099

              
Query: 473  ca 474
            ||
Sbjct: 1098 ca 1097



to top

>gb|BT012934.1| Lycopersicon esculentum clone 114097R, mRNA sequence
          Length = 1956

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 414  gcaagatcctgcatcgtggtctgcacagcacctggttgcttcg 456
            ||||| |||||||| || ||||||||||||||  |||||||||
Sbjct: 1544 gcaagttcctgcatagttgtctgcacagcaccccgttgcttcg 1502



to top

>ref|XM_550087.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 72/89 (80%)
 Strand = Plus / Minus

                                                                        
Query: 291  gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350
            ||||||||||| | |||| | || || |||||||  || || |||||||||||| |||||
Sbjct: 1214 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 1155

                                         
Query: 351  accttctcgaaatcgctcttcgagattgg 379
            || |  ||||||||  |||| ||||||||
Sbjct: 1154 acttcatcgaaatctatctttgagattgg 1126



to top

>ref|NM_001037542.1| Mus musculus heat shock protein 14 (Hspa14), transcript variant 2,
            mRNA
          Length = 4369

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  tggtctgcacagcacctggtt 450
            |||||||||||||||||||||
Sbjct: 4306 tggtctgcacagcacctggtt 4286



to top

>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains GSSs,
              complete sequence
          Length = 119008

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 473    catgtcaccatctgtcttgaa 493
              |||||||||||||||||||||
Sbjct: 114987 catgtcaccatctgtcttgaa 115007



to top

>emb|AL079339.11|HSJ906P16 Human DNA sequence from clone RP5-906P16 on chromosome 20q13.12-13.2
             Contains ESTs, STSs and GSSs, complete sequence
          Length = 86719

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 60    gaaatagagttgacaacagaggcac 84
             |||||||||||| ||||||||||||
Sbjct: 72332 gaaatagagttgccaacagaggcac 72356



to top

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 282     aactccttggtgaacttctcg 302
               |||||||||||||||||||||
Sbjct: 1120093 aactccttggtgaacttctcg 1120073



to top

>dbj|AK031579.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030456D20 product:heat shock
            protein, 70 kDa 4, full insert sequence
          Length = 4314

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 430  tggtctgcacagcacctggtt 450
            |||||||||||||||||||||
Sbjct: 4251 tggtctgcacagcacctggtt 4231



to top

>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0019D06
          Length = 167405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 72/89 (80%)
 Strand = Plus / Plus

                                                                        
Query: 291  gtgaacttctcgtgcacctccaggtccttcttgccgacagtcggtctctgcctcgcgagg 350
            ||||||||||| | |||| | || || |||||||  || || |||||||||||| |||||
Sbjct: 9216 gtgaacttctcatacaccactagatctttcttgctcaccgttggtctctgcctcacgagg 9275

                                         
Query: 351  accttctcgaaatcgctcttcgagattgg 379
            || |  ||||||||  |||| ||||||||
Sbjct: 9276 acttcatcgaaatctatctttgagattgg 9304



to top

>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176343

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    cttaatacacttgcagaaaat 36
             |||||||||||||||||||||
Sbjct: 73098 cttaatacacttgcagaaaat 73078



to top

>emb|AL732620.14| Mouse DNA sequence from clone RP23-167G19 on chromosome 2, complete
              sequence
          Length = 230116

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 430    tggtctgcacagcacctggtt 450
              |||||||||||||||||||||
Sbjct: 215394 tggtctgcacagcacctggtt 215414



to top

>gb|AC154808.2| Mus musculus BAC clone RP24-512K19 from chromosome 13, complete
             sequence
          Length = 187080

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   ttaagcacagtaagggctac 146
             ||||||||||||||||||||
Sbjct: 91895 ttaagcacagtaagggctac 91876



to top

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     tgcggctgtgcatgggtcga 240
               ||||||||||||||||||||
Sbjct: 1976887 tgcggctgtgcatgggtcga 1976906



to top

>ref|XM_756646.1| Ustilago maydis 521 hypothetical protein (UM05592.1) partial mRNA
          Length = 4761

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 472  acatgtcaccatctgtcttg 491
            ||||||||||||||||||||
Sbjct: 4321 acatgtcaccatctgtcttg 4302



to top

>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence
          Length = 261151

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   catacgttaagcacagtaag 140
             ||||||||||||||||||||
Sbjct: 75253 catacgttaagcacagtaag 75272



to top

>gb|AC090597.9| Homo sapiens chromosome 11, clone RP11-541L7, complete sequence
          Length = 160210

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      aataatcaattattccttaa 20
              ||||||||||||||||||||
Sbjct: 103137 aataatcaattattccttaa 103156



to top

>emb|AL133473.5| Human DNA sequence from clone RP1-236A3 on chromosome 6 Contains the 3'
             end of the gene for phenylalanine-tRNA synthetase (FARS1),
             complete sequence
          Length = 57423

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   ccacagggcatccacatgtc 478
             ||||||||||||||||||||
Sbjct: 46916 ccacagggcatccacatgtc 46935



to top

>gb|AC144561.8| Homo sapiens 3 BAC RP11-628C23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 35869

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     aataatcaattattccttaataca 24
             ||||||||||||| ||||||||||
Sbjct: 23281 aataatcaattataccttaataca 23258



to top

>dbj|AK056714.1| Homo sapiens cDNA FLJ32152 fis, clone PLACE5000178, highly similar to
            PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-)
          Length = 3276

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  atccacagggcatccacatg 476
            ||||||||||||||||||||
Sbjct: 2188 atccacagggcatccacatg 2207



to top

>dbj|AK055814.1| Homo sapiens cDNA FLJ31252 fis, clone KIDNE2005424, highly similar to
            PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-)
          Length = 3032

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 457  atccacagggcatccacatg 476
            ||||||||||||||||||||
Sbjct: 1391 atccacagggcatccacatg 1410



to top

>gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complete sequence
          Length = 197498

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    catacgttaagcacagtaag 140
              ||||||||||||||||||||
Sbjct: 109221 catacgttaagcacagtaag 109240



to top

>emb|AL139300.6|CNS01DXG Human chromosome 14 DNA sequence BAC R-894P9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 191563

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 457    atccacagggcatccacatg 476
              ||||||||||||||||||||
Sbjct: 179161 atccacagggcatccacatg 179142



to top

>emb|AL133367.4|CNS01DUS Human chromosome 14 DNA sequence BAC R-600F24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181652

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   atccacagggcatccacatg 476
             ||||||||||||||||||||
Sbjct: 34104 atccacagggcatccacatg 34085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,876,073
Number of Sequences: 3902068
Number of extensions: 3876073
Number of successful extensions: 70620
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70513
Number of HSP's gapped (non-prelim): 106
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top