Clone Name | rbart35b07 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ628169.1| Hordeum vulgare bci3 gene for putative acid phosphatase Length = 2748 Score = 204 bits (103), Expect = 2e-49 Identities = 208/243 (85%) Strand = Plus / Minus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 ||||| ||||||||||||||||||| ||| | |||||||||| || ||||| ||||||| Sbjct: 2618 cctaggcgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgc 2559 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||| || Sbjct: 2558 cgaggatgtcgctccactggtcgccgatgttgccgacgatgacgtacccggcatcctcca 2499 Query: 375 gcttctgcctctcgccggacttgtaggtcaccgcagagcccttgaacccgggttgcttca 434 |||||| ||||||| |||||||||||| | || |||||||||||||| ||||||| | Sbjct: 2498 gcttcttcctctcggcggacttgtaggatatggcggagcccttgaacccatgttgcttga 2439 Query: 435 gcaagaggttcatccacccagagatcccctggcggcggaggttggtgacggtgatggccc 494 || ||| |||||||||| |||| ||||||| ||||||||| |||||||| ||||| Sbjct: 2438 gcgtcaggctcatccacccggagaagccctggctgcggaggttcccgacggtgacggccc 2379 Query: 495 tct 497 ||| Sbjct: 2378 tct 2376
>emb|AJ250282.2|HVU250282 Hordeum vulgare partial mRNA for putative acid phosphatase (bci-3 gene) Length = 1152 Score = 204 bits (103), Expect = 2e-49 Identities = 208/243 (85%) Strand = Plus / Minus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 ||||| ||||||||||||||||||| ||| | |||||||||| || ||||| ||||||| Sbjct: 1022 cctaggcgatgtagtacatggggtcaggccggctgaaggtgcgagcgccctcgggcgcgc 963 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||| || Sbjct: 962 cgaggatgtcgctccactggtcgccgatgttgccgacgatgacgtacccggcatcctcca 903 Query: 375 gcttctgcctctcgccggacttgtaggtcaccgcagagcccttgaacccgggttgcttca 434 |||||| ||||||| |||||||||||| | || |||||||||||||| ||||||| | Sbjct: 902 gcttcttcctctcggcggacttgtaggatatggcggagcccttgaacccatgttgcttga 843 Query: 435 gcaagaggttcatccacccagagatcccctggcggcggaggttggtgacggtgatggccc 494 || ||| |||||||||| |||| ||||||| ||||||||| |||||||| ||||| Sbjct: 842 gcgtcaggctcatccacccggagaagccctggctgcggaggttcccgacggtgacggccc 783 Query: 495 tct 497 ||| Sbjct: 782 tct 780
>gb|AY106317.1| Zea mays PCO101473 mRNA sequence Length = 827 Score = 184 bits (93), Expect = 2e-43 Identities = 132/145 (91%) Strand = Plus / Minus Query: 257 tagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccg 316 ||||| |||||||| | |||||| ||||||||||||||||| || ||||| ||||||||| Sbjct: 541 tagccaatgtagtagagggggtcaggcagcttgaaggtgcgcgcgccctccggcgcgccg 482 Query: 317 aggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgcagc 376 |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct: 481 aggatgtcgctccactggtcgccgatgttgccgacgatgacgtacccggcgtcctggagc 422 Query: 377 ttctgcctctcgccggacttgtagg 401 ||||| | ||||||||||||||||| Sbjct: 421 ttctggcgctcgccggacttgtagg 397 Score = 89.7 bits (45), Expect = 8e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 460 cccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 cccctggcggcggaggttggtgacggtgatggccctctggtcctc 294
>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01, complete sequence Length = 135184 Score = 157 bits (79), Expect = 4e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 |||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||| | Sbjct: 89814 cctagccgatgtagtacagggggtcaggcaacttgaaggtgcgggcgccctccggcgcac 89873 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| ||||||||| |||||||||||||||||| | ||||| |||| || Sbjct: 89874 cgaggatgtcgctccactggtcaccgatgttaccgacgatggtgaaaccggcatcctcca 89933 Query: 375 gcttctgcctctcgccggacttg 397 ||||||||| ||||||||||||| Sbjct: 89934 gcttctgccgctcgccggacttg 89956 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 263 atgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatg 322 |||||||| | |||||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 80220 atgtagtataaggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatg 80279 Query: 323 tcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgcagcttctgc 382 || | ||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 80280 tcactccactggtcaccgatgttcccgacgatgatgaagccagcgtcctgcagcttctgc 80339 Query: 383 ctctcgccggacttgta 399 | ||||||||||||||| Sbjct: 80340 cgctcgccggacttgta 80356 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 |||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||| | Sbjct: 90313 cctagccgatgtagtacagggggtcaggcaacttgaaggtgcgggcgccctccggcgcac 90372 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| ||||||||| |||||||||||||| ||| | ||||| |||| || Sbjct: 90373 cgaggatgtcgctccactggtcaccgatgttaccgacaatggtgaaaccggcatcctcca 90432 Query: 375 gcttctgcctctcgccggacttg 397 ||||||||| ||||||||||||| Sbjct: 90433 gcttctgccgctcgccggacttg 90455 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | Sbjct: 104198 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 104257 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||| | ||| ||||| || |||||||||| |||| | ||||| |||| || Sbjct: 104258 cgaggatgtcactccattggtcaccaatgttaccgaggatggtgaaaccggcatcctcca 104317 Query: 375 gcttctgcctctcgccggacttgta 399 |||| |||| ||||||||||||||| Sbjct: 104318 gcttttgccgctcgccggacttgta 104342 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 5307 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 5360 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| |||||||||||| ||| |||||||| Sbjct: 104419 ccctgccggcggaggtttgtgacggtgatgttcctttggtcctc 104462 Score = 44.1 bits (22), Expect = 0.44 Identities = 52/62 (83%) Strand = Plus / Plus Query: 429 gcttcagcaagaggttcatccacccagagatcccctggcggcggaggttggtgacggtga 488 |||| ||||| || ||||||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 90502 gcttgagcaacagcttcatccacccggagtatccctgccggcgaaggtttgtgacggtga 90561 Query: 489 tg 490 || Sbjct: 90562 tg 90563 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Plus Query: 448 ccacccagagatcccctggcggcggaggttggtgacggtgatggccctctggtc 501 |||||| |||| ||||| ||| ||||||| ||||||||||||| ||| ||||| Sbjct: 80420 ccacccggagaatccctgtcggtggaggttcgtgacggtgatggtcctttggtc 80473
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 4e-35 Identities = 127/143 (88%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 |||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||| | Sbjct: 5556605 cctagccgatgtagtacagggggtcaggcaacttgaaggtgcgggcgccctccggcgcac 5556664 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| ||||||||| |||||||||||||||||| | ||||| |||| || Sbjct: 5556665 cgaggatgtcgctccactggtcaccgatgttaccgacgatggtgaaaccggcatcctcca 5556724 Query: 375 gcttctgcctctcgccggacttg 397 ||||||||| ||||||||||||| Sbjct: 5556725 gcttctgccgctcgccggacttg 5556747 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Plus Query: 263 atgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatg 322 |||||||| | |||||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 5547011 atgtagtataaggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatg 5547070 Query: 323 tcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgcagcttctgc 382 || | ||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 5547071 tcactccactggtcaccgatgttcccgacgatgatgaagccagcgtcctgcagcttctgc 5547130 Query: 383 ctctcgccggacttgta 399 | ||||||||||||||| Sbjct: 5547131 cgctcgccggacttgta 5547147 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 |||||||||||||||||| |||||| |||| ||||||||||||||| ||||| ||||| | Sbjct: 5557104 cctagccgatgtagtacagggggtcaggcaacttgaaggtgcgggcgccctccggcgcac 5557163 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||||| ||||||||| |||||||||||||| ||| | ||||| |||| || Sbjct: 5557164 cgaggatgtcgctccactggtcaccgatgttaccgacaatggtgaaaccggcatcctcca 5557223 Query: 375 gcttctgcctctcgccggacttg 397 ||||||||| ||||||||||||| Sbjct: 5557224 gcttctgccgctcgccggacttg 5557246 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Plus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | Sbjct: 5570989 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 5571048 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||| | ||| ||||| || |||||||||| |||| | ||||| |||| || Sbjct: 5571049 cgaggatgtcactccattggtcaccaatgttaccgaggatggtgaaaccggcatcctcca 5571108 Query: 375 gcttctgcctctcgccggacttgta 399 |||| |||| ||||||||||||||| Sbjct: 5571109 gcttttgccgctcgccggacttgta 5571133 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 284 agcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactggtcgccgatg 343 ||||||||||||||||| ||| | | || |||||||| ||||| ||||||||| |||||| Sbjct: 5399395 agcttgaaggtgcgggctcccgccgccgggccgaggaggtcgctccactggtcaccgatg 5399454 Query: 344 ttaccgacgatgacata 360 |||||||| ||| |||| Sbjct: 5399455 ttaccgacaatggcata 5399471 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 5472098 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 5472151 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 5416590 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 5416649 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 5416650 ttccactggtcgccaatgttgccgacgatga 5416680 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 316 gaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggc 366 ||||||||||| ||||||||| |||||||| |||| |||||||| ||||| Sbjct: 5452349 gaggatgtcgctccactggtcaccgatgttgccgataatgacatagccggc 5452399 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Plus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| |||||||||||| ||| |||||||| Sbjct: 5571210 ccctgccggcggaggtttgtgacggtgatgttcctttggtcctc 5571253 Score = 44.1 bits (22), Expect = 0.44 Identities = 52/62 (83%) Strand = Plus / Plus Query: 429 gcttcagcaagaggttcatccacccagagatcccctggcggcggaggttggtgacggtga 488 |||| ||||| || ||||||||||| ||| ||||| ||||| ||||| |||||||||| Sbjct: 5557293 gcttgagcaacagcttcatccacccggagtatccctgccggcgaaggtttgtgacggtga 5557352 Query: 489 tg 490 || Sbjct: 5557353 tg 5557354 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Plus Query: 448 ccacccagagatcccctggcggcggaggttggtgacggtgatggccctctggtc 501 |||||| |||| ||||| ||| ||||||| ||||||||||||| ||| ||||| Sbjct: 5547211 ccacccggagaatccctgtcggtggaggttcgtgacggtgatggtcctttggtc 5547264 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 caaaaagaaaaacagcataa 53 |||||||||||||||||||| Sbjct: 19093896 caaaaagaaaaacagcataa 19093877
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 250 ggcggcctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctgg 309 |||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct: 16055858 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctccgg 16055799 Query: 310 cgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtc 369 || || | |||||| | ||||||||| ||||||||||||||||||| | |||||||| Sbjct: 16055798 tgcacccaagatgtcactccactggtctccgatgttaccgacgatgatgaagccggcgtc 16055739 Query: 370 ctgcagcttctgcctctcgccggacttgta 399 |||||||||||| | ||||||||||||||| Sbjct: 16055738 ctgcagcttctgacgctcgccggacttgta 16055709 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 16055632 ccctgccggcggaggttcgcgacggtgatggccctctggtcctc 16055589 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 25973349 ttctgcctctcgccggactt 25973330 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 25938072 ttctgcctctcgccggactt 25938091
>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F09 Length = 166568 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 250 ggcggcctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctgg 309 |||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct: 26191 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctccgg 26132 Query: 310 cgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtc 369 || || | |||||| | ||||||||| ||||||||||||||||||| | |||||||| Sbjct: 26131 tgcacccaagatgtcactccactggtctccgatgttaccgacgatgatgaagccggcgtc 26072 Query: 370 ctgcagcttctgcctctcgccggacttgta 399 |||||||||||| | ||||||||||||||| Sbjct: 26071 ctgcagcttctgacgctcgccggacttgta 26042 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 25965 ccctgccggcggaggttcgcgacggtgatggccctctggtcctc 25922
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 155 bits (78), Expect = 2e-34 Identities = 132/150 (88%) Strand = Plus / Minus Query: 250 ggcggcctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctgg 309 |||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| || Sbjct: 137260 ggcgacctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctccgg 137201 Query: 310 cgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtc 369 || || | |||||| | ||||||||| ||||||||||||||||||| | |||||||| Sbjct: 137200 tgcacccaagatgtcactccactggtctccgatgttaccgacgatgatgaagccggcgtc 137141 Query: 370 ctgcagcttctgcctctcgccggacttgta 399 |||||||||||| | ||||||||||||||| Sbjct: 137140 ctgcagcttctgacgctcgccggacttgta 137111 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 137034 ccctgccggcggaggttcgcgacggtgatggccctctggtcctc 136991
>dbj|AK059825.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F04, full insert sequence Length = 1076 Score = 153 bits (77), Expect = 7e-34 Identities = 122/137 (89%) Strand = Plus / Minus Query: 263 atgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatg 322 |||||||| | |||||| |||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 903 atgtagtataaggggtcaggcagcttgaaggtgcgggcgccctccggcgcgccgaggatg 844 Query: 323 tcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgcagcttctgc 382 || | ||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 843 tcactccactggtcaccgatgttcccgacgatgatgaagccagcgtcctgcagcttctgc 784 Query: 383 ctctcgccggacttgta 399 | ||||||||||||||| Sbjct: 783 cgctcgccggacttgta 767 Score = 44.1 bits (22), Expect = 0.44 Identities = 46/54 (85%) Strand = Plus / Minus Query: 448 ccacccagagatcccctggcggcggaggttggtgacggtgatggccctctggtc 501 |||||| |||| ||||| ||| ||||||| ||||||||||||| ||| ||||| Sbjct: 703 ccacccggagaatccctgtcggtggaggttcgtgacggtgatggtcctttggtc 650
>ref|XM_477966.1| Oryza sativa (japonica cultivar-group), mRNA Length = 411 Score = 151 bits (76), Expect = 3e-33 Identities = 127/144 (88%) Strand = Plus / Minus Query: 256 ctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgcc 315 |||||||||||||||||||||||| ||||||||||||||||| || ||||| || || || Sbjct: 411 ctagccgatgtagtacatggggtcaggcagcttgaaggtgcgagcgccctccggtgcacc 352 Query: 316 gaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgcag 375 | |||||| | ||||||||| ||||||||||||||||||| | |||||||||||||| Sbjct: 351 caagatgtcactccactggtctccgatgttaccgacgatgatgaagccggcgtcctgcag 292 Query: 376 cttctgcctctcgccggacttgta 399 |||||| | ||||||||||||||| Sbjct: 291 cttctgacgctcgccggacttgta 268 Score = 63.9 bits (32), Expect = 5e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| | |||||||||||||||||||||||| Sbjct: 191 ccctgccggcggaggttcgcgacggtgatggccctctggtcctc 148
>dbj|AK061404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full insert sequence Length = 1131 Score = 121 bits (61), Expect = 2e-24 Identities = 124/145 (85%) Strand = Plus / Minus Query: 255 cctagccgatgtagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgc 314 ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | Sbjct: 885 cctagccgatgtagtacatggggtccggcagcttgaaggtgcgggcgccctccggtgtac 826 Query: 315 cgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcgtcctgca 374 |||||||||| | ||| ||||| || |||||||||| |||| | ||||| |||| || Sbjct: 825 cgaggatgtcactccattggtcaccaatgttaccgaggatggtgaaaccggcatcctcca 766 Query: 375 gcttctgcctctcgccggacttgta 399 |||| |||| ||||||||||||||| Sbjct: 765 gcttttgccgctcgccggacttgta 741 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 461 ccctggcggcggaggttggtgacggtgatggccctctggtcctc 504 ||||| ||||||||||| |||||||||||| ||| |||||||| Sbjct: 664 ccctgccggcggaggtttgtgacggtgatgttcctttggtcctc 621
>dbj|AK119190.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-H02, full insert sequence Length = 1112 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK106112.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D12, full insert sequence Length = 1105 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK104355.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H04, full insert sequence Length = 1012 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK104267.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H12, full insert sequence Length = 1040 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK104252.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A07, full insert sequence Length = 1040 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK104180.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H06, full insert sequence Length = 1012 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>dbj|AK061507.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F05, full insert sequence Length = 1105 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 750 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 691 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 690 ccggcgtccacaagcttctgcc 669
>gb|AC152973.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNOa0076M01, complete sequence Length = 36050 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 32795 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 32854 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 32855 ccggcgtccacaagcttctgcc 32876 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 316 gaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggc 366 ||||||||||| ||||||||| |||||||| |||| |||||||| ||||| Sbjct: 6680 gaggatgtcgctccactggtcaccgatgttgccgataatgacatagccggc 6730
>gb|AC152971.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNOa0023G10, complete sequence Length = 36253 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 302 ccctctggcgcgccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatac 361 ||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct: 6415 ccctccggcgagccgaggatgtcggtccactggtcgccgatgttgccgacgatgacatag 6474 Query: 362 ccggcgtcctgcagcttctgcc 383 ||||||||| |||||||||| Sbjct: 6475 ccggcgtccacaagcttctgcc 6496 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 25538 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 25591
>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10, complete sequence Length = 153366 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 284 agcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactggtcgccgatg 343 ||||||||||||||||| ||| | | || |||||||| ||||| ||||||||| |||||| Sbjct: 86069 agcttgaaggtgcgggctcccgccgccgggccgaggaggtcgctccactggtcaccgatg 86128 Query: 344 ttaccgacgatgacata 360 |||||||| ||| |||| Sbjct: 86129 ttaccgacaatggcata 86145 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 103264 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 103323 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 103324 ttccactggtcgccaatgttgccgacgatga 103354 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 316 gaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggc 366 ||||||||||| ||||||||| |||||||| |||| |||||||| ||||| Sbjct: 139023 gaggatgtcgctccactggtcaccgatgttgccgataatgacatagccggc 139073
>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10, complete sequence Length = 102275 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 284 agcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactggtcgccgatg 343 ||||||||||||||||| ||| | | || |||||||| ||||| ||||||||| |||||| Sbjct: 84909 agcttgaaggtgcgggctcccgccgccgggccgaggaggtcgctccactggtcaccgatg 84968 Query: 344 ttaccgacgatgacata 360 |||||||| ||| |||| Sbjct: 84969 ttaccgacaatggcata 84985 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Plus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 102104 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 102163 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 102164 ttccactggtcgccaatgttgccgacgatga 102194
>dbj|AK109335.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C11, full insert sequence Length = 1168 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 786 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 733
>dbj|AK104519.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D05, full insert sequence Length = 1081 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 786 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 733
>dbj|AK104460.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B10, full insert sequence Length = 1081 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 786 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 733
>dbj|AK104246.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E04, full insert sequence Length = 1081 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 786 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 733
>dbj|AK060968.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C05, full insert sequence Length = 1096 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 314 ccgaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggcg 367 |||||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 786 ccgaggatatcgctccattggtcaccgatgttaccgacgatgacatagccggcg 733
>dbj|AK104624.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A08, full insert sequence Length = 1051 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 794 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 735 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 734 ttccactggtcgccaatgttgccgacgatga 704
>dbj|AK104203.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C10, full insert sequence Length = 1053 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 796 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 737 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 736 ttccactggtcgccaatgttgccgacgatga 706
>dbj|AK067327.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099D13, full insert sequence Length = 1059 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 802 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 743 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 742 ttccactggtcgccaatgttgccgacgatga 712
>dbj|AK060874.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A01, full insert sequence Length = 1074 Score = 61.9 bits (31), Expect = 2e-06 Identities = 76/91 (83%) Strand = Plus / Minus Query: 266 tagtacatggggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcg 325 ||||||||||||| ||| | ||| ||||||||| ||| || |||| || | |||||||| Sbjct: 795 tagtacatggggttggggaacttaaaggtgcggcaaccatccggcgagcggcggatgtcg 736 Query: 326 ccccactggtcgccgatgttaccgacgatga 356 |||||||||||| ||||| |||||||||| Sbjct: 735 ttccactggtcgccaatgttgccgacgatga 705
>ref|NM_189664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 912 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 821 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 762 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 761 tcgccgatgttgccga 746
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 4871431 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 4871490 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 4871491 tcgccgatgttgccga 4871506
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 116080 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 116139 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 116140 tcgccgatgttgccga 116155
>dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E06, full insert sequence Length = 1095 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 844 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 785 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 784 tcgccgatgttgccga 769
>dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D10, full insert sequence Length = 1094 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 843 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 784 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 783 tcgccgatgttgccga 768
>dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C11, full insert sequence Length = 1095 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 844 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 785 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 784 tcgccgatgttgccga 769
>dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083N07, full insert sequence Length = 1308 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 1057 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 998 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 997 tcgccgatgttgccga 982
>dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C05, full insert sequence Length = 1095 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 844 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 785 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 784 tcgccgatgttgccga 769
>dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B05, full insert sequence Length = 1114 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 275 gggtcgggcagcttgaaggtgcgggcaccctctggcgcgccgaggatgtcgccccactgg 334 |||| ||||||||||||||| ||| ||||| |||| ||| || | ||||| ||||||| Sbjct: 844 gggttgggcagcttgaaggtccggcggccctccggcgagcccagcaggtcgctccactgg 785 Query: 335 tcgccgatgttaccga 350 ||||||||||| |||| Sbjct: 784 tcgccgatgttgccga 769
>dbj|AK061489.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B02, full insert sequence Length = 1100 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 316 gaggatgtcgccccactggtcgccgatgttaccgacgatgacatacccggc 366 ||||||||||| ||||||||| |||||||| |||| |||||||| ||||| Sbjct: 760 gaggatgtcgctccactggtcaccgatgttgccgataatgacatagccggc 710
>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the gene for a novel protein similar to transforming growth factor beta-stimulated protein (TSC-22), SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ) pseudogene and a CpG island, complete sequence Length = 140499 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 27 aatagagcaaaaagaaaaacag 48 |||||||||||||||||||||| Sbjct: 57015 aatagagcaaaaagaaaaacag 57036
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete sequence Length = 87937 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 atagagcaaaaagaaaaacag 48 ||||||||||||||||||||| Sbjct: 76846 atagagcaaaaagaaaaacag 76826
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gcgccgaggatgtcgccccac 331 ||||||||||||||||||||| Sbjct: 291850 gcgccgaggatgtcgccccac 291870
>gb|AC134585.6| Mus musculus BAC clone RP23-302F9 from 8, complete sequence Length = 249251 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 gacggtgatggccctctggtc 501 ||||||||||||||||||||| Sbjct: 208833 gacggtgatggccctctggtc 208813
>gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome 3, complete sequence Length = 211791 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgtaatagagcaaaaagaa 42 |||||||||||||||||||| Sbjct: 117796 ttgtaatagagcaaaaagaa 117777
>ref|NM_193052.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1491 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 739 ttctgcctctcgccggactt 758
>ref|NM_193043.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1374 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 1204 ttctgcctctcgccggactt 1223
>gb|AC118201.8| Mus musculus chromosome 7, clone RP23-339M11, complete sequence Length = 194241 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 caagctctcaacaatggaaa 143 |||||||||||||||||||| Sbjct: 189390 caagctctcaacaatggaaa 189371
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 caaaaagaaaaacagcataa 53 |||||||||||||||||||| Sbjct: 106539 caaaaagaaaaacagcataa 106520
>ref|XM_425961.1| PREDICTED: Gallus gallus similar to multiple myeloma transforming gene 2 (LOC428400), mRNA Length = 828 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 cctggcggcggaggttggtgacgg 485 ||||||||||||||| |||||||| Sbjct: 109 cctggcggcggaggtgggtgacgg 86
>gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete sequence Length = 130146 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tcctgcagcttctgcctctc 387 |||||||||||||||||||| Sbjct: 108648 tcctgcagcttctgcctctc 108629
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 caaaaagaaaaacagcataa 53 |||||||||||||||||||| Sbjct: 15794 caaaaagaaaaacagcataa 15775
>gb|AC147153.2| Mus musculus chromosome y clone RP24-373C15, complete sequence Length = 147194 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaagaaaaacagcat 51 |||||||||||||||||||| Sbjct: 97467 agcaaaaagaaaaacagcat 97448
>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence Length = 191274 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 caaaaagaaaaacagcataa 53 |||||||||||||||||||| Sbjct: 89419 caaaaagaaaaacagcataa 89400
>gb|AC158213.4| Mus musculus chromosome 7, clone RP24-253H20, complete sequence Length = 175873 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 caagctctcaacaatggaaa 143 |||||||||||||||||||| Sbjct: 27587 caagctctcaacaatggaaa 27568
>gb|AC090525.8| Homo sapiens 12 BAC RP11-73B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174576 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 agctctcaacaatggaaatg 145 |||||||||||||||||||| Sbjct: 45528 agctctcaacaatggaaatg 45547
>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the gene for an ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 (ALS2CR19), the 3' end of a novel gene and two CpG islands, complete sequence Length = 216046 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaagaaaaacagcat 51 |||||||||||||||||||| Sbjct: 159754 agcaaaaagaaaaacagcat 159735
>emb|AL645946.6| Mouse DNA sequence from clone DN-276O13 on chromosome 1 Contains part of the ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 19 ALS2CR19 (2810455B10RIK 6030439I24RIK 2010002N16RIK), and the 3' end of a novel gene (4930448K12RIK 4930412B09RIK), complete sequence Length = 140936 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaagaaaaacagcat 51 |||||||||||||||||||| Sbjct: 86874 agcaaaaagaaaaacagcat 86855
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 tcgggcagcttgaaggtgcgggcaccct 305 |||||||||||||||| |||||| |||| Sbjct: 1551158 tcgggcagcttgaaggcgcgggcgccct 1551185
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 473 aggttggtgacggtgatggc 492 |||||||||||||||||||| Sbjct: 1566505 aggttggtgacggtgatggc 1566486
>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 Length = 2668010 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 agcataacaaagatccattg 66 |||||||||||||||||||| Sbjct: 1378777 agcataacaaagatccattg 1378796
>gb|AC021860.6| Homo sapiens BAC clone RP11-617D20 from 4, complete sequence Length = 148045 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 atagagcaaaaagaaaaaca 47 |||||||||||||||||||| Sbjct: 54741 atagagcaaaaagaaaaaca 54722
>dbj|AK157470.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830218A04 product:hypothetical protein, full insert sequence Length = 3588 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaagaaaaacagcat 51 |||||||||||||||||||| Sbjct: 1751 agcaaaaagaaaaacagcat 1732
>emb|BX950605.2| Gallus gallus finished cDNA, clone ChEST529k5 Length = 536 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 cctggcggcggaggttggtgacgg 485 ||||||||||||||| |||||||| Sbjct: 195 cctggcggcggaggtgggtgacgg 172
>dbj|AK050953.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030043H03 product:unclassifiable, full insert sequence Length = 2047 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agcaaaaagaaaaacagcat 51 |||||||||||||||||||| Sbjct: 211 agcaaaaagaaaaacagcat 192
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 taattcatagtagcaattaa 120 |||||||||||||||||||| Sbjct: 22025728 taattcatagtagcaattaa 22025709
>emb|BX934717.1| Gallus gallus finished cDNA, clone ChEST114j14 Length = 532 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 cctggcggcggaggttggtgacgg 485 ||||||||||||||| |||||||| Sbjct: 191 cctggcggcggaggtgggtgacgg 168
>ref|XM_231590.3| PREDICTED: Rattus norvegicus plexin A4 (predicted) (Plxna4_predicted), mRNA Length = 7451 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 cggccgagccagaggcggcc 256 |||||||||||||||||||| Sbjct: 42 cggccgagccagaggcggcc 61
>gb|AC010656.7|AC010656 Homo sapiens clone RP11-275E24, complete sequence Length = 139032 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaaacagcataacaaagat 60 |||||||||||||||||||| Sbjct: 28510 aaaaacagcataacaaagat 28529
>dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506F02 Length = 151612 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 50361 ttctgcctctcgccggactt 50342 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 15084 ttctgcctctcgccggactt 15103
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 6911 ttctgcctctcgccggactt 6892
>emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 in linkage group 20, complete sequence Length = 84525 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 attaagcagcatgcaacatc 86 |||||||||||||||||||| Sbjct: 6109 attaagcagcatgcaacatc 6090
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ttctgcctctcgccggactt 396 |||||||||||||||||||| Sbjct: 108520 ttctgcctctcgccggactt 108539
>emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-16O13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166562 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taatagagcaaaaagaaaaa 45 |||||||||||||||||||| Sbjct: 119461 taatagagcaaaaagaaaaa 119480
>emb|AJ871288.1| Gadus morhua immunoglobulin heavy chain locus, germline DNA Length = 11836 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 aggatgtcgccccactggtc 336 |||||||||||||||||||| Sbjct: 1560 aggatgtcgccccactggtc 1541
>gb|AC174770.1| Gasterosteus aculeatus clone VMRC28-84C03, complete sequence Length = 124367 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cggcgtcctgcagcttctgcctct 386 ||||||||||||||| |||||||| Sbjct: 10487 cggcgtcctgcagctgctgcctct 10464
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 taattcatagtagcaattaa 120 |||||||||||||||||||| Sbjct: 21954073 taattcatagtagcaattaa 21954054
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 taattcatagtagcaattaa 120 |||||||||||||||||||| Sbjct: 131856 taattcatagtagcaattaa 131837
>gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, complete sequence Length = 202377 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taatagagcaaaaagaaaaa 45 |||||||||||||||||||| Sbjct: 105164 taatagagcaaaaagaaaaa 105183
>emb|AL512359.2|CNS07EF8 Human chromosome 14 DNA sequence BAC R-286B5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157395 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tagagcaaaaagaaaaacag 48 |||||||||||||||||||| Sbjct: 132388 tagagcaaaaagaaaaacag 132369 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,042,751 Number of Sequences: 3902068 Number of extensions: 5042751 Number of successful extensions: 94980 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94437 Number of HSP's gapped (non-prelim): 531 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)