Clone Name | rbart35b06 |
---|---|
Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 69.3 bits (168), Expect = 5e-12 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Frame = -1 Query: 493 TTPYAQLRSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVML 314 +TP+ L+ VY+ F F + + A+V +VAPF LC++S+K++ + P VD+++ Sbjct: 291 STPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVM 344 Query: 313 E--GGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKT 140 + G + + G + M Q G C V +G + +G Q+E LVV D + Sbjct: 345 DKPNGPVWRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEITLGARQLEENLVVFDLARSR 403 Query: 139 LSF-TPYLPARGFSCSN-FNFTRA 74 + F T L + G C++ FNF A Sbjct: 404 VGFSTSSLHSHGVKCADLFNFANA 427
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 68.2 bits (165), Expect = 1e-11 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Frame = -1 Query: 493 TTPYAQLRSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVML 314 +TP+ L+ +Y+ F F + + A+V +VAPF LC++S+K++ + P VD+++ Sbjct: 297 STPHMVLQQSLYQAFTQVFAQQLEKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVM 350 Query: 313 E--GGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKT 140 + G + + G + M Q G C V +G V +G Q+E KL+V D + Sbjct: 351 DKPNGPVWRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEVTLGTRQLEEKLMVFDLARSR 409 Query: 139 LSF-TPYLPARGFSCSN-FNFTRA 74 + F T L + G C + FNF A Sbjct: 410 VGFSTSSLHSHGVKCGDLFNFANA 433
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Frame = -1 Query: 352 LSGYSVPQVDVMLEG------GTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIG 191 L G P +++ G G+N VVGGN + V SG A G G++ +G Sbjct: 254 LDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGGGGGAGSSGGGGVG 313 Query: 190 G 188 G Sbjct: 314 G 314
>SYH_HAEIN (P43823) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 422 Score = 31.2 bits (69), Expect = 1.6 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%) Frame = -1 Query: 280 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 137 N+M +SG F ++ +GAT A+VIG +++NK VV+ + D++TL Sbjct: 357 NTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 409
>UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 14 homolog A| (Antigen NY-CO-16) Length = 771 Score = 30.8 bits (68), Expect = 2.1 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = +2 Query: 272 HGVSPHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRAGSHGAVEGRDE 451 HGVS E RP + + LR R+ L +R A G+ E +D Sbjct: 402 HGVSESEGEERPVAEEEILLREFEERR----------SLRKRSELSQDAEPAGSQETKDS 451 Query: 452 GAVHVAAELRV 484 G+ V +ELRV Sbjct: 452 GSQEVLSELRV 462
>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 104 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/43 (41%), Positives = 20/43 (46%) Frame = +2 Query: 287 HHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLR 415 HHR R H +H R R+RRR R RRHRR R Sbjct: 48 HHRHRRCKRLHRIHKRRRSCRRRRRHSCR----HRRRHRRGCR 86
>PCBD_PROMT (Q46JW9) Divinyl chlorophyll a/b light-harvesting protein pcbD| Length = 370 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -1 Query: 328 VDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENK 170 +D+ + F +G +S+ V G A AF + TGAT +V G Q ENK Sbjct: 180 LDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAEL--TGATIHMVAGSTQWENK 230
>SYH_HAEI8 (Q4QNH3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 423 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = -1 Query: 280 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 137 N+M + G F ++ +GAT A+VIG +++NK VV+ + D++TL Sbjct: 358 NTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 410
>KREM2_MOUSE (Q8K1S7) Kremen protein 2 precursor (Kringle-containing protein| marking the eye and the nose) (Kringle domain-containing transmembrane protein 2) (Dickkopf receptor 2) Length = 461 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -1 Query: 382 CYDSSKLSPTLSGYSVPQVDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPA 203 C+ S P LSG S + ++ F + G +A V +G ACF +S PA Sbjct: 126 CFVDSGAPPALSGPSGTSTKLTVQVCLRFCRMKGYQLAGVEAGYACFCGSESDLARGRPA 185
>FBX31_HUMAN (Q5XUX0) F-box only protein 31| Length = 539 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +2 Query: 311 LQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRAGSHGAVEGR 445 L+H + L ++ +L R+V ++ R R++ + G H A EGR Sbjct: 348 LRHRIQLPDLENQRNFNELSRIVLEVRERVRQEQQEGGHEAGEGR 392
>PKHA2_HUMAN (Q9HB19) Pleckstrin homology domain-containing family A member 2| (Tandem PH domain-containing protein 2) (TAPP-2) Length = 425 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = -2 Query: 492 RPPTRSSAATCTAPSSRPSTAPWDP 418 RPP A C APS S PW P Sbjct: 335 RPPLEEKKALCKAPSVASSWQPWTP 359
>RNPA_PROMI (P22835) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 119 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 290 HREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRR 406 H+ PA+ V +R GVA QL V+ +L RRH R Sbjct: 76 HQHQLPAMDFVVLVRKGVAELDNHQLTEVLGKLWRRHCR 114
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +2 Query: 269 RHGVSPHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRA 418 RH +SPHH++ P LQHH + +Q+++Q Q ++ H++ +A Sbjct: 541 RH-LSPHHQQQSPLLQHHQQQQQ--QQQQQQQHLHQQQQQQQHHQQQPQA 587 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,159,046 Number of Sequences: 219361 Number of extensions: 1041984 Number of successful extensions: 4350 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4148 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4339 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)