ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
17SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Co... 69 5e-12
27SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) ... 68 1e-11
3RGA_DROME (Q94547) Regulator of gene activity (Protein regena) 32 1.2
4SYH_HAEIN (P43823) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 31 1.6
5UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 1... 31 2.1
6PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2) 30 2.7
7PCBD_PROMT (Q46JW9) Divinyl chlorophyll a/b light-harvesting pro... 30 3.5
8SYH_HAEI8 (Q4QNH3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 30 4.6
9KREM2_MOUSE (Q8K1S7) Kremen protein 2 precursor (Kringle-contain... 30 4.6
10FBX31_HUMAN (Q5XUX0) F-box only protein 31 30 4.6
11PKHA2_HUMAN (Q9HB19) Pleckstrin homology domain-containing famil... 29 6.0
12RNPA_PROMI (P22835) Ribonuclease P protein component (EC 3.1.26.... 29 6.0
13HR4_DROME (Q9W539) Hormone receptor 4 (dHR4) 29 7.8

>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic|
           7S globulin high-kDa subunit; Basic 7S globulin low-kDa
           subunit]
          Length = 427

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
 Frame = -1

Query: 493 TTPYAQLRSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVML 314
           +TP+  L+  VY+ F   F + +   A+V +VAPF LC++S+K++      + P VD+++
Sbjct: 291 STPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVM 344

Query: 313 E--GGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKT 140
           +   G  + + G + M Q   G  C   V +G       + +G  Q+E  LVV D  +  
Sbjct: 345 DKPNGPVWRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEITLGARQLEENLVVFDLARSR 403

Query: 139 LSF-TPYLPARGFSCSN-FNFTRA 74
           + F T  L + G  C++ FNF  A
Sbjct: 404 VGFSTSSLHSHGVKCADLFNFANA 427



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>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:|
           Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin
           2 low-kDa subunit]
          Length = 433

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 4/144 (2%)
 Frame = -1

Query: 493 TTPYAQLRSDVYRPFITAFDRAMGPSAKVAAVAPFELCYDSSKLSPTLSGYSVPQVDVML 314
           +TP+  L+  +Y+ F   F + +   A+V +VAPF LC++S+K++      + P VD+++
Sbjct: 297 STPHMVLQQSLYQAFTQVFAQQLEKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVM 350

Query: 313 E--GGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDNDKKT 140
           +   G  + + G + M Q   G  C   V +G       V +G  Q+E KL+V D  +  
Sbjct: 351 DKPNGPVWRISGEDLMVQAQPGVTCLG-VMNGGMQPRAEVTLGTRQLEEKLMVFDLARSR 409

Query: 139 LSF-TPYLPARGFSCSN-FNFTRA 74
           + F T  L + G  C + FNF  A
Sbjct: 410 VGFSTSSLHSHGVKCGDLFNFANA 433



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>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)|
          Length = 585

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -1

Query: 352 LSGYSVPQVDVMLEG------GTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIG 191
           L G   P   +++ G      G+N  VVGGN +  V SG    A    G  G++    +G
Sbjct: 254 LDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGGGGGAGSSGGGGVG 313

Query: 190 G 188
           G
Sbjct: 314 G 314



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>SYH_HAEIN (P43823) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 422

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -1

Query: 280 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 137
           N+M   +SG     F ++  +GAT A+VIG  +++NK VV+ +     D++TL
Sbjct: 357 NTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 409



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>UT14A_HUMAN (Q9BVJ6) U3 small nucleolar RNA-associated protein 14 homolog A|
           (Antigen NY-CO-16)
          Length = 771

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = +2

Query: 272 HGVSPHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRAGSHGAVEGRDE 451
           HGVS    E RP  +  + LR    R+           L +R      A   G+ E +D 
Sbjct: 402 HGVSESEGEERPVAEEEILLREFEERR----------SLRKRSELSQDAEPAGSQETKDS 451

Query: 452 GAVHVAAELRV 484
           G+  V +ELRV
Sbjct: 452 GSQEVLSELRV 462



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>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 104

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 287 HHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLR 415
           HHR  R    H +H R    R+RRR   R      RRHRR  R
Sbjct: 48  HHRHRRCKRLHRIHKRRRSCRRRRRHSCR----HRRRHRRGCR 86



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>PCBD_PROMT (Q46JW9) Divinyl chlorophyll a/b light-harvesting protein pcbD|
          Length = 370

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 328 VDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENK 170
           +D+ +     F  +G +S+  V  G A  AF +   TGAT  +V G  Q ENK
Sbjct: 180 LDLTMIWNRQFDFIGIDSLEDVMGGHAFLAFAEL--TGATIHMVAGSTQWENK 230



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>SYH_HAEI8 (Q4QNH3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 423

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -1

Query: 280 NSMAQVNSGTACFAFVQSGSTGATPAVVIGGFQMENKLVVLDN-----DKKTL 137
           N+M   + G     F ++  +GAT A+VIG  +++NK VV+ +     D++TL
Sbjct: 358 NTMLHCSGGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTL 410



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>KREM2_MOUSE (Q8K1S7) Kremen protein 2 precursor (Kringle-containing protein|
           marking the eye and the nose) (Kringle domain-containing
           transmembrane protein 2) (Dickkopf receptor 2)
          Length = 461

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 382 CYDSSKLSPTLSGYSVPQVDVMLEGGTNFTVVGGNSMAQVNSGTACFAFVQSGSTGATPA 203
           C+  S   P LSG S     + ++    F  + G  +A V +G ACF   +S      PA
Sbjct: 126 CFVDSGAPPALSGPSGTSTKLTVQVCLRFCRMKGYQLAGVEAGYACFCGSESDLARGRPA 185



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>FBX31_HUMAN (Q5XUX0) F-box only protein 31|
          Length = 539

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 311 LQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRAGSHGAVEGR 445
           L+H + L     ++   +L R+V ++  R R++ + G H A EGR
Sbjct: 348 LRHRIQLPDLENQRNFNELSRIVLEVRERVRQEQQEGGHEAGEGR 392



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>PKHA2_HUMAN (Q9HB19) Pleckstrin homology domain-containing family A member 2|
           (Tandem PH domain-containing protein 2) (TAPP-2)
          Length = 425

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 492 RPPTRSSAATCTAPSSRPSTAPWDP 418
           RPP     A C APS   S  PW P
Sbjct: 335 RPPLEEKKALCKAPSVASSWQPWTP 359



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>RNPA_PROMI (P22835) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP|
           protein) (RNase P protein) (Protein C5)
          Length = 119

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 290 HREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRR 406
           H+   PA+   V +R GVA     QL  V+ +L RRH R
Sbjct: 76  HQHQLPAMDFVVLVRKGVAELDNHQLTEVLGKLWRRHCR 114



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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 269 RHGVSPHHREVRPALQHHVHLRHGVARQRRRQLGRVVAQLERRHRRDLRA 418
           RH +SPHH++  P LQHH   +    +Q+++Q      Q ++ H++  +A
Sbjct: 541 RH-LSPHHQQQSPLLQHHQQQQQ--QQQQQQQHLHQQQQQQQHHQQQPQA 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,159,046
Number of Sequences: 219361
Number of extensions: 1041984
Number of successful extensions: 4350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4339
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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