ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 234 5e-59
2gb|AC074033.18| Homo sapiens 3 BAC RP11-641D5 (Roswell Park Canc... 42 0.42
3gb|AC170424.1| Rhesus Macaque BAC CH250-53N5 (Children's Hospit... 40 1.6
4gb|AC170423.1| Rhesus Macaque BAC CH250-107D17 (Children's Hosp... 40 1.6
5gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, c... 40 1.6
6gb|AC022261.8| Homo sapiens BAC clone RP11-95A10 from 7, complet... 40 1.6
7emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 i... 40 1.6
8gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromo... 40 1.6
9gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, com... 38 6.5
10gb|AC092238.2| Drosophila melanogaster clone BACR03D18, complete... 38 6.5
11gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, com... 38 6.5
12gb|AY587764.1| Homo sapiens opioid receptor, mu 1 (OPRM1) gene, ... 38 6.5
13emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 38 6.5
14gb|AC122059.1| Mus musculus BAC clone RP24-468J3 from 1, complet... 38 6.5
15gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complet... 38 6.5
16gb|AC104700.4| Homo sapiens BAC clone RP11-712I20 from 7, comple... 38 6.5
17gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete se... 38 6.5
18emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chr... 38 6.5
19emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L... 38 6.5
20gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 38 6.5
21gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosom... 38 6.5
22gb|BC036678.1| Homo sapiens GrpE-like 2, mitochondrial (E. coli)... 38 6.5
23gb|BC070090.1| Homo sapiens GrpE-like 2, mitochondrial (E. coli)... 38 6.5
24emb|CR861425.1| Pongo pygmaeus mRNA; cDNA DKFZp459K242 (from clo... 38 6.5
25emb|CR860565.1| Pongo pygmaeus mRNA; cDNA DKFZp459B067 (from clo... 38 6.5
26gb|AC131025.1| Homo sapiens chromosome 5 clone RP11-394O4, compl... 38 6.5
27gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell ... 38 6.5
28dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 38 6.5
29gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, comple... 38 6.5
30gb|AF375853.1|AF375853 Toxocara canis hemoglobin (glb-p) gene, p... 38 6.5
31gb|AF375852.1|AF375852 Toxocara canis hemoglobin (glb-p) gene, p... 38 6.5
32ref|NM_152407.3| Homo sapiens GrpE-like 2, mitochondrial (E. col... 38 6.5
33gb|AC022681.8| Homo sapiens chromosome 8, clone RP11-731D24, com... 38 6.5
34gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, compl... 38 6.5
35gb|AC156567.3| Mus musculus BAC clone RP23-333F2 from chromosome... 38 6.5
36gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 6.5
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
39gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, co... 38 6.5
40gb|DQ239620.1| Ovis aries clone clone TO-UP-I23-8 tubulin alpha ... 38 6.5
41gb|DQ239612.1| Ovis aries clone clone TO-UP-D18-1 tubulin-alpha ... 38 6.5
42gb|AC174866.1| Mus musculus BAC clone RP24-322E13 from chromosom... 38 6.5
43dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
44dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
45dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
46gb|AC153536.3| Mus musculus 10 BAC RP23-402F24 (Roswell Park Can... 38 6.5
47dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
48dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
49dbj|AK074293.1| Homo sapiens cDNA FLJ23713 fis, clone HEP12771, ... 38 6.5
50ref|NM_210942.1| Eremothecium gossypii AFR041Cp (AFR041C), mRNA 38 6.5
51gb|AC024810.1| Caenorhabditis elegans cosmid Y54E10A, complete s... 38 6.5
52gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55... 38 6.5
53gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36... 38 6.5
54gb|AC154608.3| Mus musculus BAC clone RP23-334N8 from chromosome... 38 6.5
55emb|BX005254.9| Zebrafish DNA sequence from clone DKEY-81P22 in ... 38 6.5
56emb|AL832325.1|HSM803632 Homo sapiens mRNA; cDNA DKFZp451C205 (f... 38 6.5 
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
          Length = 1102

 Score =  234 bits (118), Expect = 5e-59
 Identities = 130/134 (97%)
 Strand = Plus / Minus

                                                                        
Query: 4    cgctgcctcacatcagggcctccctttttccacaaaatacacaccaacctttggcacatt 63
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1093 cgctgcctcacatcaggccctccctttttccacaaaatacacaccaacctttgtcacatt 1034

                                                                        
Query: 64   atcccctgggttttcccacccaacgcaacagcaccaaccaacaacaaaagagagcggaca 123
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 atcccctggtttttcccacccaacgcaacagcaccaaccaacaacaaaagagagcggaca 974

                          
Query: 124  aattcgcgggtttg 137
            ||||||||| ||||
Sbjct: 973  aattcgcggttttg 960
to top
>gb|AC074033.18| Homo sapiens 3 BAC RP11-641D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127945

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     ctgcctcacatcagggcctcc 26
             |||||||||||||||||||||
Sbjct: 76765 ctgcctcacatcagggcctcc 76785
to top
>gb|AC170424.1| Rhesus Macaque  BAC CH250-53N5 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 175619

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ttccacaaaatacacaccaa 50
             ||||||||||||||||||||
Sbjct: 60503 ttccacaaaatacacaccaa 60522
to top
>gb|AC170423.1| Rhesus Macaque  BAC CH250-107D17 (Children's Hospital Oakland
            Research Institute Rhesus macaque Adult Male BAC Library)
            complete sequence
          Length = 167419

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   ttccacaaaatacacaccaa 50
            ||||||||||||||||||||
Sbjct: 9826 ttccacaaaatacacaccaa 9807
to top
>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence
          Length = 173430

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    caaaatacacaccaacctttggca 59
             |||||||||||||| |||||||||
Sbjct: 47189 caaaatacacaccatcctttggca 47166
to top
>gb|AC022261.8| Homo sapiens BAC clone RP11-95A10 from 7, complete sequence
          Length = 146688

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ttccacaaaatacacaccaa 50
             ||||||||||||||||||||
Sbjct: 84353 ttccacaaaatacacaccaa 84334
to top
>emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 in linkage group 3,
              complete sequence
          Length = 151254

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     atcagggcctccctttttccacaa 38
              |||||||||||| |||||||||||
Sbjct: 116774 atcagggcctccttttttccacaa 116797
to top
>gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromosome 7, complete
             sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ttccacaaaatacacaccaa 50
             ||||||||||||||||||||
Sbjct: 44920 ttccacaaaatacacaccaa 44939
to top
>gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, complete sequence
          Length = 176856

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    caacagcaccaaccaacaa 107
             |||||||||||||||||||
Sbjct: 89796 caacagcaccaaccaacaa 89778
to top
>gb|AC092238.2| Drosophila melanogaster clone BACR03D18, complete sequence
          Length = 184681

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 90    aacagcaccaaccaacaacaaaa 112
             ||||||| |||||||||||||||
Sbjct: 54055 aacagcaacaaccaacaacaaaa 54033
to top
>gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, complete sequence
          Length = 202894

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    aaaatacacaccaaccttt 55
             |||||||||||||||||||
Sbjct: 41999 aaaatacacaccaaccttt 42017
to top
>gb|AY587764.1| Homo sapiens opioid receptor, mu 1 (OPRM1) gene, complete cds
          Length = 83889

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaatacacaccaacctttg 56
             |||||||||||||||||||
Sbjct: 74228 aaatacacaccaacctttg 74246
to top
>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    accaaccaacaacaaaaga 114
             |||||||||||||||||||
Sbjct: 14201 accaaccaacaacaaaaga 14183
to top
>gb|AC122059.1| Mus musculus BAC clone RP24-468J3 from 1, complete sequence
          Length = 162681

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    accaaccaacaacaaaaga 114
             |||||||||||||||||||
Sbjct: 31581 accaaccaacaacaaaaga 31563
to top
>gb|AC098707.2| Mus musculus BAC clone RP23-1I13 from 18, complete sequence
          Length = 230128

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 92     cagcaccaaccaacaacaaaaga 114
              ||||||||| |||||||||||||
Sbjct: 224617 cagcaccaaacaacaacaaaaga 224639
to top
>gb|AC104700.4| Homo sapiens BAC clone RP11-712I20 from 7, complete sequence
          Length = 66759

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    cctttttccacaaaataca 44
             |||||||||||||||||||
Sbjct: 52488 cctttttccacaaaataca 52470
to top
>gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete sequence
          Length = 124857

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    tccacaaaatacacaccaa 50
             |||||||||||||||||||
Sbjct: 38976 tccacaaaatacacaccaa 38958
to top
>emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chromosome Xq11.2-13.1
             Contains a GrpE-like 2 mitochondrial (E. coli) pseudogene
             and a novel pseudogene, complete sequence
          Length = 131070

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    cctttttccacaaaataca 44
             |||||||||||||||||||
Sbjct: 34209 cctttttccacaaaataca 34227
to top
>emb|AL132774.20|HSDJ402L9 Human DNA sequence from clone RP3-402L9 on chromosome 6q25-26.1
            Contains the 3' end of the OPRM1 gene for opiate
            receptor, mu 1 (MOR-1) and the 3' end of the gene for
            phosphoinositide-binding protein PIP3-E (KIAA0403),
            complete sequence
          Length = 98104

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   aaatacacaccaacctttg 56
            |||||||||||||||||||
Sbjct: 8732 aaatacacaccaacctttg 8750
to top
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 92     cagcaccaaccaacaacaaaaga 114
              ||||||||| |||||||||||||
Sbjct: 181286 cagcaccaaacaacaacaaaaga 181264
to top
>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete sequence
          Length = 195721

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 92     cagcaccaaccaacaacaaaaga 114
              ||||||||| |||||||||||||
Sbjct: 117963 cagcaccaaacaacaacaaaaga 117941
to top
>gb|BC036678.1| Homo sapiens GrpE-like 2, mitochondrial (E. coli), mRNA (cDNA clone
            MGC:33849 IMAGE:5259464), complete cds
          Length = 4042

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1095 cctttttccacaaaataca 1077
to top
>gb|BC070090.1| Homo sapiens GrpE-like 2, mitochondrial (E. coli), mRNA (cDNA clone
            MGC:87471 IMAGE:30347705), complete cds
          Length = 4015

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1077 cctttttccacaaaataca 1059
to top
>emb|CR861425.1| Pongo pygmaeus mRNA; cDNA DKFZp459K242 (from clone DKFZp459K242)
          Length = 3961

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1065 cctttttccacaaaataca 1047
to top
>emb|CR860565.1| Pongo pygmaeus mRNA; cDNA DKFZp459B067 (from clone DKFZp459B067)
          Length = 3878

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1010 cctttttccacaaaataca 992
to top
>gb|AC131025.1| Homo sapiens chromosome 5 clone RP11-394O4, complete sequence
          Length = 179633

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     cctttttccacaaaataca 44
              |||||||||||||||||||
Sbjct: 110449 cctttttccacaaaataca 110467
to top
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 164941

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 88   gcaacagcaccaaccaacaacaa 110
            ||||||||| |||||||||||||
Sbjct: 4181 gcaacagcaacaaccaacaacaa 4203
to top
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 99      aaccaacaacaaaagagag 117
               |||||||||||||||||||
Sbjct: 1839586 aaccaacaacaaaagagag 1839604
to top
>gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, complete sequence
          Length = 192886

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    acagcaccaaccaacaaca 109
             |||||||||||||||||||
Sbjct: 94139 acagcaccaaccaacaaca 94157
to top
>gb|AF375853.1|AF375853 Toxocara canis hemoglobin (glb-p) gene, partial cds
          Length = 2739

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  ccacaaaatacacaccaaccttt 55
           |||||||||||||||| ||||||
Sbjct: 483 ccacaaaatacacacccaccttt 505
to top
>gb|AF375852.1|AF375852 Toxocara canis hemoglobin (glb-p) gene, partial cds
          Length = 2833

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  ccacaaaatacacaccaaccttt 55
           |||||||||||||||| ||||||
Sbjct: 483 ccacaaaatacacacccaccttt 505
to top
>ref|NM_152407.3| Homo sapiens GrpE-like 2, mitochondrial (E. coli) (GRPEL2), nuclear
            gene encoding mitochondrial protein, mRNA
          Length = 4105

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1175 cctttttccacaaaataca 1157
to top
>gb|AC022681.8| Homo sapiens chromosome 8, clone RP11-731D24, complete sequence
          Length = 219658

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 22     cctccctttttccacaaaataca 44
              |||||||||||||||| ||||||
Sbjct: 171740 cctccctttttccacagaataca 171762
to top
>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence
          Length = 164550

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    cctttttccacaaaataca 44
             |||||||||||||||||||
Sbjct: 13504 cctttttccacaaaataca 13522
to top
>gb|AC156567.3| Mus musculus BAC clone RP23-333F2 from chromosome 13, complete sequence
          Length = 204778

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    accaaccaacaacaaaaga 114
             |||||||||||||||||||
Sbjct: 36541 accaaccaacaacaaaaga 36523
to top
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     ccaacgcaacagcaccaac 101
              |||||||||||||||||||
Sbjct: 508698 ccaacgcaacagcaccaac 508680
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 37       aaaatacacaccaaccttt 55
                |||||||||||||||||||
Sbjct: 16026695 aaaatacacaccaaccttt 16026713
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 22       cctccctttttccacaaaa 40
                |||||||||||||||||||
Sbjct: 14499204 cctccctttttccacaaaa 14499186



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 28      tttttccacaaaatacaca 46
               |||||||||||||||||||
Sbjct: 7801748 tttttccacaaaatacaca 7801730
to top
>gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, complete sequence
          Length = 131703

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     caacagcaccaaccaacaa 107
              |||||||||||||||||||
Sbjct: 111313 caacagcaccaaccaacaa 111331
to top
>gb|DQ239620.1| Ovis aries clone clone TO-UP-I23-8 tubulin alpha 3 mRNA, partial
           cds
          Length = 385

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 31  ttccacaaaatacacaccaacct 53
           ||||||||||| |||||||||||
Sbjct: 101 ttccacaaaatccacaccaacct 79
to top
>gb|DQ239612.1| Ovis aries clone clone TO-UP-D18-1 tubulin-alpha mRNA, partial cds
          Length = 586

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 31  ttccacaaaatacacaccaacct 53
           ||||||||||| |||||||||||
Sbjct: 306 ttccacaaaatccacaccaacct 284
to top
>gb|AC174866.1| Mus musculus BAC clone RP24-322E13 from chromosome 6, complete sequence
          Length = 168541

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 31    ttccacaaaatacacaccaacct 53
             ||||||||||| |||||||||||
Sbjct: 87292 ttccacaaaatccacaccaacct 87270
to top
>dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0475C12
          Length = 140863

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    aaaatacacaccaaccttt 55
             |||||||||||||||||||
Sbjct: 98734 aaaatacacaccaaccttt 98752
to top
>dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1116_C12
          Length = 116758

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     cctccctttttccacaaaa 40
              |||||||||||||||||||
Sbjct: 107702 cctccctttttccacaaaa 107684
to top
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1077_A12
          Length = 149089

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     tttttccacaaaatacaca 46
              |||||||||||||||||||
Sbjct: 138013 tttttccacaaaatacaca 137995
to top
>gb|AC153536.3| Mus musculus 10 BAC RP23-402F24 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 208392

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    cccaacgcaacagcaccaaccaa 104
             ||||| |||||||||||||||||
Sbjct: 53765 cccaaagcaacagcaccaaccaa 53787
to top
>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0006L10
          Length = 171115

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    tttttccacaaaatacaca 46
             |||||||||||||||||||
Sbjct: 42111 tttttccacaaaatacaca 42093
to top
>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0075E08
          Length = 130947

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   cctccctttttccacaaaa 40
            |||||||||||||||||||
Sbjct: 3220 cctccctttttccacaaaa 3202
to top
>dbj|AK074293.1| Homo sapiens cDNA FLJ23713 fis, clone HEP12771, highly similar to
            GRPE PROTEIN HOMOLOG 2 PRECURSOR
          Length = 4026

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1061 cctttttccacaaaataca 1043
to top
>ref|NM_210942.1| Eremothecium gossypii AFR041Cp (AFR041C), mRNA
          Length = 774

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 83  ccaacgcaacagcaccaac 101
           |||||||||||||||||||
Sbjct: 321 ccaacgcaacagcaccaac 339
to top
>gb|AC024810.1| Caenorhabditis elegans cosmid Y54E10A, complete sequence
          Length = 101640

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   tccacaaaatacacaccaa 50
            |||||||||||||||||||
Sbjct: 4515 tccacaaaatacacaccaa 4497
to top
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete
             sequence
          Length = 265413

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 90    aacagcaccaaccaacaacaaaa 112
             ||||||| |||||||||||||||
Sbjct: 19053 aacagcaacaaccaacaacaaaa 19075
to top
>gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36 of 83 of the complete
              sequence
          Length = 295143

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 88     gcaacagcaccaaccaacaacaa 110
              ||||||||| |||||||||||||
Sbjct: 236258 gcaacagcaacaaccaacaacaa 236280
to top
>gb|AC154608.3| Mus musculus BAC clone RP23-334N8 from chromosome 16, complete sequence
          Length = 212928

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     accaaccaacaacaaaaga 114
              |||||||||||||||||||
Sbjct: 119215 accaaccaacaacaaaaga 119197
to top
>emb|BX005254.9| Zebrafish DNA sequence from clone DKEY-81P22 in linkage group 23,
             complete sequence
          Length = 160012

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 24    tccctttttccacaaaatacaca 46
             ||||||||||||||| |||||||
Sbjct: 91067 tccctttttccacaacatacaca 91089
to top
>emb|AL832325.1|HSM803632 Homo sapiens mRNA; cDNA DKFZp451C205 (from clone DKFZp451C205);
            complete cds
          Length = 4007

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   cctttttccacaaaataca 44
            |||||||||||||||||||
Sbjct: 1070 cctttttccacaaaataca 1052


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,450,237
Number of Sequences: 3902068
Number of extensions: 1450237
Number of successful extensions: 102197
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102016
Number of HSP's gapped (non-prelim): 181
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top