ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart35b02 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 149 bits (376), Expect = 5e-36 Identities = 76/80 (95%), Positives = 78/80 (97%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARNAFYQ+T Sbjct: 310 SYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQAT 369 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 IKQGDFLLNRIQKLSRVIDL Sbjct: 370 IKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 148 bits (373), Expect = 1e-35 Identities = 74/80 (92%), Positives = 78/80 (97%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+NA YQ+T Sbjct: 308 SYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQAT 367 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 IKQGDFLLNRIQKLSRVIDL Sbjct: 368 IKQGDFLLNRIQKLSRVIDL 387
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 119 bits (299), Expect = 4e-27 Identities = 58/80 (72%), Positives = 70/80 (87%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SY+S+T+ MA AFGV VDFIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N YQ T Sbjct: 310 SYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQET 369 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 IK+GD LLNR+QKLSRVI++ Sbjct: 370 IKKGDLLLNRVQKLSRVINM 389
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 119 bits (297), Expect = 7e-27 Identities = 55/80 (68%), Positives = 72/80 (90%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N YQ+T Sbjct: 310 SYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQAT 369 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 IKQGD LLNRIQKLSRVI++ Sbjct: 370 IKQGDLLLNRIQKLSRVINI 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 118 bits (295), Expect = 1e-26 Identities = 57/80 (71%), Positives = 70/80 (87%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SY+S+T+ MA AFGV V+FIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N YQ T Sbjct: 310 SYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQET 369 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 IK+GD LLNR+QKLSRVI++ Sbjct: 370 IKKGDLLLNRVQKLSRVINM 389
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 91.7 bits (226), Expect = 1e-18 Identities = 43/85 (50%), Positives = 64/85 (75%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SY+++++++MAA+FGV+VD+ID++L+ FI KL+C ID+V GV+ TNRPD +N YQ Sbjct: 325 SYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEV 384 Query: 349 IKQGDFLLNRIQKLSRVIDL*AFFV 275 +KQGD LLN++QK + AF V Sbjct: 385 VKQGDVLLNKLQKYQATVMRGAFKV 409
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 90.5 bits (223), Expect = 3e-18 Identities = 44/78 (56%), Positives = 58/78 (74%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 YK+V ++ MA FGV+ FID+EL R IA G+L C+ID V GV+E N D++N Y++ I Sbjct: 332 YKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVI 391 Query: 346 KQGDFLLNRIQKLSRVID 293 K GD LLNRIQKL+RVI+ Sbjct: 392 KDGDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 86.3 bits (212), Expect = 5e-17 Identities = 39/80 (48%), Positives = 60/80 (75%) Frame = -2 Query: 529 SYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQST 350 SYK++++++MA+AFGV+V F+D +L +FI +L+C ID+V G++ETNRPD +NA Y Sbjct: 344 SYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLL 403 Query: 349 IKQGDFLLNRIQKLSRVIDL 290 +KQGD LL ++QK + L Sbjct: 404 VKQGDGLLTKLQKYGAAVRL 423
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ ++ ++ Sbjct: 361 YVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420 Query: 346 KQG 338 G Sbjct: 421 LMG 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ ++ ++ Sbjct: 361 YVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420 Query: 346 KQG 338 G Sbjct: 421 LMG 423
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 + SV + MA AF +V +++EL I ++ +ID +L D RNA +Q + Sbjct: 350 FVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVL 409 Query: 346 KQGD 335 + G+ Sbjct: 410 QMGN 413
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 346 KQGDFLLNRIQKLSRVI 296 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 346 KQGDFLLNRIQKLSRVI 296 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 346 KQGDFLLNRIQKLSRVI 296 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 36.2 bits (82), Expect = 0.058 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -2 Query: 526 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 347 Y S M MA AF +V ++ E+ + I G++ +ID +L D RN+ ++ + Sbjct: 410 YMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERAL 469 Query: 346 KQG 338 G Sbjct: 470 IMG 472
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 421 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 296 K KVA V+ NRP A NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50
>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE| Length = 454 Score = 30.0 bits (66), Expect = 4.1 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -2 Query: 478 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 338 +DF D+E+ F++ GK+ K+D+V LE R AR S +++G Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,924,680 Number of Sequences: 219361 Number of extensions: 1614757 Number of successful extensions: 3788 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3788 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
