ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart35a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SELT_ARATH (Q9STZ2) SelT-like protein precursor 57 2e-08
2SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor 34 0.24
3HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory pro... 33 0.32
4SELT_DROME (Q9VMV6) SelT-like protein precursor 31 1.6
5LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 30 3.5
6LEU3_SCHPO (P18869) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 30 4.6
7LEU3_SORMA (Q6TWC4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 29 7.8
8LEU3_NEUCR (P34738) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 29 7.8

>SELT_ARATH (Q9STZ2) SelT-like protein precursor|
          Length = 209

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 29/42 (69%), Positives = 32/42 (76%)
 Frame = -2

Query: 493 SSGAFEVYCNGDLVFSKLAEQRFPSEFELRDLIGSRLPSSPF 368
           SSGAFEV CNG+LVFSKL E RFP E ELRDLI   + + PF
Sbjct: 164 SSGAFEVSCNGELVFSKLKEGRFPGEIELRDLISGTM-TKPF 204



to top

>SELT1_CAEEL (Q9U3N5) Putative selT-like protein C35C5.3 precursor|
          Length = 247

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 493 SSGAFEVYCNGDLVFSKLAEQRFPSEFELRDLIGSRL 383
           S+GAFEVY   + ++SK+   R PS  E   LI ++L
Sbjct: 191 STGAFEVYLGNEQIWSKIESGRVPSPQEFMQLIDAQL 227



to top

>HSP6_HETGL (Q9BN19) Putative esophageal gland cell secretory protein 6|
           precursor
          Length = 244

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -2

Query: 493 SSGAFEVYCNGDLVFSKLAEQRFPSEFELRDLIGSRL 383
           S+GAFE+Y   + ++SKL   R PS  EL   I S L
Sbjct: 187 STGAFEIYIESERIWSKLESGRVPSPPELFQAIDSHL 223



to top

>SELT_DROME (Q9VMV6) SelT-like protein precursor|
          Length = 198

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = -2

Query: 493 SSGAFEVYCNGDLVFSKLAEQRFPSEFELRDLIGSRL 383
           SSGAFE+  N   V+SKL   RFPS   L  +I + L
Sbjct: 148 SSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHL 184



to top

>LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 190 WHETVTDSVTLLYEHLTPVWS*LPDTAMLLVKSPESSRG 74
           W +TVT+++   +  LT     +   AM+L+KSP +  G
Sbjct: 201 WRKTVTETIEKEFPQLTVQHQLIDSAAMILIKSPTTLNG 239



to top

>LEU3_SCHPO (P18869) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 371

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -2

Query: 190 WHETVTDSVTLLYEHLTPVWS*LPDTAMLLVKSPESSRGSLSPFFCENLF 41
           W +TV       Y HLT     +   AMLLVKSP +  G +     +NLF
Sbjct: 201 WRKTVAKIFKEEYPHLTLKNQLIDSAAMLLVKSPRTLNGVV---LTDNLF 247



to top

>LEU3_SORMA (Q6TWC4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 368

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 190 WHETVTDSVTLLYEHLTPVWS*LPDTAMLLVKSPESSRG 74
           W +TVTD ++  +  L      +   AMLLVK+P +  G
Sbjct: 203 WRKTVTDVISKEFPQLQLEHQLIDSAAMLLVKNPRALNG 241



to top

>LEU3_NEUCR (P34738) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 368

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 190 WHETVTDSVTLLYEHLTPVWS*LPDTAMLLVKSPESSRG 74
           W +TVTD ++  +  L      +   AMLLVK+P +  G
Sbjct: 203 WRKTVTDVISKEFPQLQLEHQLIDSAAMLLVKNPRALNG 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,462,212
Number of Sequences: 219361
Number of extensions: 1267664
Number of successful extensions: 2527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2527
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top