ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 3090773 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 3090832 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 3090833 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 3090892 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 3090893 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 3090936 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggtcaaagcttatcgcgac 220 |||||||||||||||||||| Sbjct: 3090630 cggtcaaagcttatcgcgac 3090649
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 34561 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 34620 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 34621 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 34680 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 34681 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 34724 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggtcaaagcttatcgcgac 220 |||||||||||||||||||| Sbjct: 34418 cggtcaaagcttatcgcgac 34437
>dbj|AK106273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G11, full insert sequence Length = 1336 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 922 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 863 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 862 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 803 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 802 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 759 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cggtcaaagcttatcgcgac 220 |||||||||||||||||||| Sbjct: 1065 cggtcaaagcttatcgcgac 1046
>dbj|AK106334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F11, full insert sequence Length = 1256 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 846 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 787 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 786 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 727 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 726 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 683
>dbj|AK070330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049H21, full insert sequence Length = 1264 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Minus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 926 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 867 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 866 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 807 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 806 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 763 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cggtcaaagcttatcgcgac 220 |||||||||||||||||||| Sbjct: 1069 cggtcaaagcttatcgcgac 1050
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 167 bits (84), Expect = 4e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 338 cgccgtccttgtgctggccgaacttgtgcacggcgaggtggagctccgcggcggccacga 397 ||||||||||| || |||||||| ||||||||||||||||||||| |||||||| | || Sbjct: 58813 cgccgtccttgcgcctgccgaactcgtgcacggcgaggtggagctcggcggcggcgatga 58872 Query: 398 ggaagtgcacggcctgcgcaggccggagcagccccaccacgccgcgcagcgtctccagcc 457 |||||||||||||||||| || ||||||||| ||||||| | | || ||||||||||| Sbjct: 58873 ggaagtgcacggcctgcgacgggcggagcagcgccaccacctccctcatcgtctccagcc 58932 Query: 458 tcagcccgtccgccatctccagcacgcgcttcatcgcctccgcc 501 |||||||||| |||||||||||||||||| ||||| | |||||| Sbjct: 58933 tcagcccgtctgccatctccagcacgcgcctcatcccgtccgcc 58976 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 cggtcaaagcttatcgcgac 220 |||||||||||||||||||| Sbjct: 58670 cggtcaaagcttatcgcgac 58689
>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA insertion sequence Length = 267 Score = 61.9 bits (31), Expect = 2e-06 Identities = 53/59 (89%), Gaps = 1/59 (1%) Strand = Plus / Minus Query: 1 caaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 59 ||||||||||||||| || ||| | |||||| |||||||||||||||||||| |||||| Sbjct: 136 caaaataattgtctt-aactttgttctagctctagtataaaattatactaagcttaaga 79
>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene, complete cds Length = 2513 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 1 caaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 59 |||||||||||||| ||| ||| |||||||| |||||||||||| || |||| |||||| Sbjct: 1324 caaaataattgtct-caactttgtactagctctagtataaaattgtattaagcttaaga 1381
>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene, complete cds Length = 2550 Score = 54.0 bits (27), Expect = 5e-04 Identities = 52/59 (88%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 1 caaaataattgtcttcaattttatactagctttagtataaaattatactaagtttaaga 59 |||||||||||||| ||| ||| |||||||| |||||||||||| || |||| |||||| Sbjct: 1349 caaaataattgtct-caactttgtactagctctagtataaaattgtattaagcttaaga 1406
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Minus Query: 17 aattttatactagctttagtataaaattatactaag 52 |||||| || ||||||||||||||| |||||||||| Sbjct: 117170 aattttgtattagctttagtataaagttatactaag 117135
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 cggcgaggtggagctccgcggcg 390 ||||||||||||||||||||||| Sbjct: 4062261 cggcgaggtggagctccgcggcg 4062239
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 368 cggcgaggtggagctccgcggcg 390 ||||||||||||||||||||||| Sbjct: 105915 cggcgaggtggagctccgcggcg 105893
>ref|XM_463896.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1967 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttgt 349 ||||||||| |||||||||||||||| Sbjct: 1380 ctccgccgtcgccgcgccgtccttgt 1355
>gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence Length = 149907 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 aataattgtcttcaattttata 25 |||||||||||||||||||||| Sbjct: 4945 aataattgtcttcaattttata 4966
>gb|AC144695.3| Felis catus clone RP86-311E1, complete sequence Length = 11859 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 aataattgtcttcaattttata 25 |||||||||||||||||||||| Sbjct: 7186 aataattgtcttcaattttata 7207
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttgt 349 ||||||||| |||||||||||||||| Sbjct: 1015586 ctccgccgtcgccgcgccgtccttgt 1015561 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 cgccgcgcagcgtctccagc 456 |||||||||||||||||||| Sbjct: 5281618 cgccgcgcagcgtctccagc 5281637
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttgt 349 ||||||||| |||||||||||||||| Sbjct: 4294 ctccgccgtcgccgcgccgtccttgt 4269
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttgt 349 ||||||||| |||||||||||||||| Sbjct: 87005 ctccgccgtcgccgcgccgtccttgt 86980
>dbj|AK070181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043H21, full insert sequence Length = 1967 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttgt 349 ||||||||| |||||||||||||||| Sbjct: 1380 ctccgccgtcgccgcgccgtccttgt 1355
>ref|NM_197357.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0076F20.12), mRNA Length = 1551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 agccccaccacgccgcgcagc 447 ||||||||||||||||||||| Sbjct: 8 agccccaccacgccgcgcagc 28
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence Length = 206456 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 taaaattatactaagtttaag 58 ||||||||||||||||||||| Sbjct: 139549 taaaattatactaagtttaag 139569
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 taaaattatactaagtttaag 58 ||||||||||||||||||||| Sbjct: 71725 taaaattatactaagtttaag 71745
>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene, complete cds Length = 4643 Score = 42.1 bits (21), Expect = 1.7 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 1 caaaataattgtcttcaattttatactagctttagtataaa 41 ||||||||||||| |||| ||| |||||||| ||||||||| Sbjct: 2050 caaaataattgtc-tcaactttgtactagctctagtataaa 2089
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 agccccaccacgccgcgcagc 447 ||||||||||||||||||||| Sbjct: 65989 agccccaccacgccgcgcagc 65969
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 agccccaccacgccgcgcagc 447 ||||||||||||||||||||| Sbjct: 19438123 agccccaccacgccgcgcagc 19438103
>gb|AC079907.25| Homo sapiens 12q BAC RP11-554E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184840 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ataattgtcttcaattttata 25 ||||||||||||||||||||| Sbjct: 82446 ataattgtcttcaattttata 82466
>emb|AJ621582.1| Heteropogon contortus partial mRNA for NADP-dependant malate dehydrogenase (nadp-MDH gene) Length = 1243 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttg 348 ||||||||||||| ||||||||||| Sbjct: 153 ctccgccgtggccacgccgtccttg 129
>emb|AJ512376.1|TQU512376 Themeda quadrivalvis partial mRNA for NADP-dependant malate dehydrogenase (nadp-mdh gene) Length = 1248 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 ctccgccgtggccgcgccgtccttg 348 ||||||||||||| ||||||||||| Sbjct: 153 ctccgccgtggccacgccgtccttg 129
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 agccccaccacgccgcgcagc 447 ||||||||||||||||||||| Sbjct: 19449399 agccccaccacgccgcgcagc 19449379
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 aaaataattgtcttcaatttt 22 ||||||||||||||||||||| Sbjct: 1811338 aaaataattgtcttcaatttt 1811358
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cgccgcgcagcgtctccagc 456 |||||||||||||||||||| Sbjct: 818 cgccgcgcagcgtctccagc 799
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 gccgtggccgcgccgtccttgtgc 351 |||||||||||||| ||||||||| Sbjct: 35355 gccgtggccgcgccttccttgtgc 35378
>ref|XM_419244.1| PREDICTED: Gallus gallus similar to steerin1 protein (LOC421164), mRNA Length = 4986 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ccgcgcagcgtctccagcct 458 |||||||||||||||||||| Sbjct: 109 ccgcgcagcgtctccagcct 128
>gb|AC119982.6| Mus musculus chromosome 19, clone RP24-498L9, complete sequence Length = 177924 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tttaagaggactgaaggagt 72 |||||||||||||||||||| Sbjct: 71281 tttaagaggactgaaggagt 71300
>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence Length = 226926 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 catcatacgtacacaagttg 129 |||||||||||||||||||| Sbjct: 103930 catcatacgtacacaagttg 103949
>gb|AC118724.18| Mus musculus, clone RP24-160H20, complete sequence Length = 197860 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 tttaagaggactgaaggagt 72 |||||||||||||||||||| Sbjct: 194671 tttaagaggactgaaggagt 194690
>gb|AC149546.14| Medicago truncatula clone mth2-70o13, complete sequence Length = 124127 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aataattgtcttcaatttta 23 |||||||||||||||||||| Sbjct: 50527 aataattgtcttcaatttta 50546
>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin Length = 1884 Score = 40.1 bits (20), Expect = 6.8 Identities = 46/52 (88%), Gaps = 2/52 (3%) Strand = Plus / Plus Query: 1 caaaataattgtcttcaattttatactagctttagtataaaattatactaag 52 |||||||| ||||| ||| ||| |||||| |||||||||||||| ||||||| Sbjct: 1832 caaaataagtgtct-caactttgtactag-tttagtataaaattgtactaag 1881
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 20 tttatactagctttagtataaaattatactaagtttaaga 59 ||||||||| || ||||||||| || || ||||||||||| Sbjct: 8296 tttatactaactctagtataaagttgtattaagtttaaga 8335
>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent ansamitocin biosynthetic gene cluster I, partial sequence Length = 82746 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 352 tggccgaacttgtgcacggcgaggtgga 379 |||||||||| ||| ||||||||||||| Sbjct: 41157 tggccgaactggtggacggcgaggtgga 41130
>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence Length = 174133 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 taaaattatactaagtttaa 57 |||||||||||||||||||| Sbjct: 101577 taaaattatactaagtttaa 101558
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 gccgtggccgcgccgtccttgtgc 351 |||||||||||||| ||||||||| Sbjct: 26010594 gccgtggccgcgccttccttgtgc 26010617
>gb|AC095041.3| Homo sapiens BAC clone RP11-84H6 from 4, complete sequence Length = 176008 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ataattgtcttcaattttat 24 |||||||||||||||||||| Sbjct: 118510 ataattgtcttcaattttat 118491
>gb|AC108205.5| Homo sapiens BAC clone RP11-140N6 from 4, complete sequence Length = 132623 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ataattgtcttcaattttat 24 |||||||||||||||||||| Sbjct: 68731 ataattgtcttcaattttat 68712
>gb|AF216699.1|AF216699 Taenia crassiceps mitochondrion, complete genome Length = 13503 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ttagtataaaattatactaa 51 |||||||||||||||||||| Sbjct: 8738 ttagtataaaattatactaa 8719
>gb|AY237399.1| Herpailurus yaguarondi melanocortin-1 receptor (MC1R) gene, complete cds Length = 954 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 521 tctccagcacgctcttcatcgcct 544
>gb|AY237398.1| Herpailurus yaguarondi melanocortin-1 receptor (MC1R) gene, MC1R-delta-24 allele, complete cds Length = 930 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 497 tctccagcacgctcttcatcgcct 520
>gb|AY237397.1| Panthera onca melanocortin-1 receptor (MC1R) gene, MC1R-delta-15 allele, complete cds Length = 939 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 506 tctccagcacgctcttcatcgcct 529
>gb|AY237396.1| Panthera onca melanocortin-1 receptor (MC1R) gene, complete cds Length = 954 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 521 tctccagcacgctcttcatcgcct 544
>gb|AY237395.1| Felis catus melanocortin-1 receptor (MC1R) gene, complete cds Length = 954 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 521 tctccagcacgctcttcatcgcct 544
>ref|NM_001009324.1| Felis catus melanocortin 1 receptor (MC1R), mRNA Length = 954 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 521 tctccagcacgctcttcatcgcct 544
>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 116115 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cgcgcttcatcgcctccgcc 501 |||||||||||||||||||| Sbjct: 2559 cgcgcttcatcgcctccgcc 2578
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 cgccgcgcagcgtctccagc 456 |||||||||||||||||||| Sbjct: 7921 cgccgcgcagcgtctccagc 7940
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 cgccgcgcagcgtctccagc 456 |||||||||||||||||||| Sbjct: 817 cgccgcgcagcgtctccagc 798
>dbj|AB100089.1| Felis catus MC1R gene for melanocortin 1 receptor, complete cds Length = 954 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 473 tctccagcacgcgcttcatcgcct 496 |||||||||||| ||||||||||| Sbjct: 521 tctccagcacgctcttcatcgcct 544
>emb|CR759813.6| Zebrafish DNA sequence from clone DKEY-150H10 in linkage group 18, complete sequence Length = 152902 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 caaaataattgtcttcaattttat 24 |||||| ||||||||||||||||| Sbjct: 73394 caaaattattgtcttcaattttat 73417
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 tccgcggcggccacgaggaagtgc 405 ||||||||||| |||||||||||| Sbjct: 887857 tccgcggcggcgacgaggaagtgc 887880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,977,041 Number of Sequences: 3902068 Number of extensions: 3977041 Number of successful extensions: 90432 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 89875 Number of HSP's gapped (non-prelim): 556 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
