>RPOB_EHRSE (Q93MK9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1357

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 36  HSAPRLILVATP*FKSSSRGQGPPFISTNPKRK*NREAEIRLTQFPLCS 182
           +SAP   ++    F   + G+G   +ST P  K  RE EI +   P+ S
Sbjct: 83  YSAPLRAILRLVVFGDETSGEGSEGVSTEPAVKDVREQEIYMGDIPIMS 131

>AMT11_LYCES (P58905) Ammonium transporter 1, member 1 (LeAMT1;1)|
          Length = 488

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 169 NCVRRISASLFYFLFGFVLIKGGP 98
           N +   +  LFY+LFGF    GGP
Sbjct: 81  NVLDAAAGGLFYYLFGFAFALGGP 104

>YBHH_SHIFL (P0AAW0) Hypothetical protein ybhH|
          Length = 350

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 106 LLLAQIQKGNKIGKPKYVSHNSHSALVITG 195
           +L++  QKG  I    ++ H+ H AL ITG
Sbjct: 252 VLISPAQKGGAINVRYFMPHSCHRALAITG 281

>YBHH_ECOLI (P0AAV8) Hypothetical protein ybhH|
          Length = 350

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 106 LLLAQIQKGNKIGKPKYVSHNSHSALVITG 195
           +L++  QKG  I    ++ H+ H AL ITG
Sbjct: 252 VLISPAQKGGAINVRYFMPHSCHRALAITG 281

>YBHH_ECOL6 (P0AAV9) Hypothetical protein ybhH|
          Length = 350

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 106 LLLAQIQKGNKIGKPKYVSHNSHSALVITG 195
           +L++  QKG  I    ++ H+ H AL ITG
Sbjct: 252 VLISPAQKGGAINVRYFMPHSCHRALAITG 281

>RPOB_EHRRI (Q93MK8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1363

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 36  HSAPRLILVATP*FKSSSRGQGPPFISTNPKRK*NREAEIRLTQFPLCS 182
           +SAP   ++    F   + G+G   +ST P  K  RE EI +   P+ S
Sbjct: 83  YSAPLRAILRLVVFGDETSGEGGEGVSTEPAVKDVREQEIYMGDIPIMS 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,145,243
Number of Sequences: 219361
Number of extensions: 602555
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)