ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 7e-74
2dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 7e-74
3ref|XM_475871.1| Oryza sativa (japonica cultivar-group), predic... 281 1e-72
4dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
5gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
6gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
8ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS ... 86 1e-13
9gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, com... 86 1e-13
10gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds 86 1e-13
11gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 7... 86 1e-13
12emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
13emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, B... 58 3e-05
14gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete s... 56 1e-04
15ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS ... 54 4e-04
16gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syn... 54 4e-04
17gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 7... 54 4e-04
18gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11... 50 0.007
19ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS ... 46 0.11
20emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BA... 46 0.11
21gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 7... 46 0.11
22emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chro... 44 0.43
23gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, com... 42 1.7
24gb|AC110247.9| Mus musculus chromosome 1, clone RP23-254H20, com... 42 1.7
25gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 1.7
26dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 1.7
27ref|NM_101867.1| Arabidopsis thaliana hydrolase, acting on ester... 40 6.6
28ref|XM_638730.1| Dictyostelium discoideum hypothetical protein (... 40 6.6
29gb|AE014075.1| Escherichia coli CFT073, complete genome 40 6.6
30gb|AY370873.1| Yersinia intermedia strain ATCC 29909 gyrase B (g... 40 6.6
31gb|CP000243.1| Escherichia coli UTI89, complete genome 40 6.6
32emb|AJ639641.1| Yersinia intermedia partial gyrB gene for DNA gy... 40 6.6
33emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, ... 40 6.6
34gb|AC116633.4| Homo sapiens BAC clone RP11-452C8 from 4, complet... 40 6.6
35gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, com... 40 6.6
36gb|AC084834.4| Homo sapiens chromosome 8, clone RP11-107M13, com... 40 6.6
37gb|AY332935.1| Yersinia intermedia strain WS 58/02 DNA gyrase su... 40 6.6
38gb|AY332933.1| Yersinia intermedia strain WE 57/93 DNA gyrase su... 40 6.6
39gb|AY332932.1| Yersinia intermedia strain WE 24/02 DNA gyrase su... 40 6.6
40gb|AY332931.1| Yersinia intermedia strain WA 11/94 DNA gyrase su... 40 6.6
41gb|AY332930.1| Yersinia intermedia strain ATCC 29909 DNA gyrase ... 40 6.6
42gb|AY332929.1| Yersinia intermedia strain 955 DNA gyrase subunit... 40 6.6
43emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 ... 40 6.6
44dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
45gb|AC139070.3| Homo sapiens chromosome 18, clone XXfos-83061E10,... 40 6.6
46gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175... 40 6.6
47gb|AC137738.5| Homo sapiens chromosome 18, clone CTD-2382L18, co... 40 6.6
48gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thali... 40 6.6
49dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
50emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in ... 40 6.6
51emb|AJ412756.1|AED412756 Allium eduardii 5.8S rRNA gene, interna... 40 6.6
52emb|AJ411959.1|AED411959 Allium eduardii 5.8S ribosomal RNA, int... 40 6.6 
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full
           insert sequence
          Length = 1227

 Score =  285 bits (144), Expect = 7e-74
 Identities = 255/292 (87%)
 Strand = Plus / Minus

                                                                       
Query: 200 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 259
           ||||||| || || ||||||||||| || || || |||||||| || |||||||||||||
Sbjct: 928 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 869

                                                                       
Query: 260 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgttttaatctca 319
           | || || ||||||||||||||||| ||||||| ||||||||  |||| ||||| ||| |
Sbjct: 868 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 809

                                                                       
Query: 320 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 379
           ||||||| ||||||| |||||  ||||||| ||||||||| || ||||||||||||||||
Sbjct: 808 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 749

                                                                       
Query: 380 agggaacttgcctatccaattcctcgttcatatccgatgccatgttcttcaaagttgcca 439
           |||||||||||||||||| |||||| |||||||| ||||||||||| |||| |||| |||
Sbjct: 748 agggaacttgcctatccagttcctcattcatatcagatgccatgtttttcagagtttcca 689

                                                               
Query: 440 gcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatctc 491
           |||||||||| |||| |||||||||||||||||| |||||| | ||||||||
Sbjct: 688 gcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctc 637
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>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full
           insert sequence
          Length = 1236

 Score =  285 bits (144), Expect = 7e-74
 Identities = 255/292 (87%)
 Strand = Plus / Minus

                                                                       
Query: 200 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 259
           ||||||| || || ||||||||||| || || || |||||||| || |||||||||||||
Sbjct: 937 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 878

                                                                       
Query: 260 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgttttaatctca 319
           | || || ||||||||||||||||| ||||||| ||||||||  |||| ||||| ||| |
Sbjct: 877 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 818

                                                                       
Query: 320 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 379
           ||||||| ||||||| |||||  ||||||| ||||||||| || ||||||||||||||||
Sbjct: 817 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 758

                                                                       
Query: 380 agggaacttgcctatccaattcctcgttcatatccgatgccatgttcttcaaagttgcca 439
           |||||||||||||||||| |||||| |||||||| ||||||||||| |||| |||| |||
Sbjct: 757 agggaacttgcctatccagttcctcattcatatcagatgccatgtttttcagagtttcca 698

                                                               
Query: 440 gcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatctc 491
           |||||||||| |||| |||||||||||||||||| |||||| | ||||||||
Sbjct: 697 gcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctc 646
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>ref|XM_475871.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score =  281 bits (142), Expect = 1e-72
 Identities = 244/278 (87%)
 Strand = Plus / Minus

                                                                       
Query: 214 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 273
           ||||||||||| || || || |||||||| || |||||||||||||| || || ||||||
Sbjct: 794 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 735

                                                                       
Query: 274 aagttgcgactggatctcatctgaagaatagtctgttttaatctcacgttggtgttcttc 333
           ||||||||||| ||||||| ||||||||  |||| ||||| ||| |||||||| ||||||
Sbjct: 734 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 675

                                                                       
Query: 334 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 393
           | |||||  ||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 674 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 615

                                                                       
Query: 394 tccaattcctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaata 453
           |||| |||||| |||||||| ||||||||||| |||| |||| ||||||||||||| |||
Sbjct: 614 tccagttcctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgata 555

                                                 
Query: 454 acatccaaaccttcatcctgcttcattctacgcatctc 491
           | |||||||||||||||||| |||||| | ||||||||
Sbjct: 554 atatccaaaccttcatcctgtttcattttgcgcatctc 517
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>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full
           insert sequence
          Length = 1252

 Score =  281 bits (142), Expect = 1e-72
 Identities = 244/278 (87%)
 Strand = Plus / Minus

                                                                       
Query: 214 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 273
           ||||||||||| || || || |||||||| || |||||||||||||| || || ||||||
Sbjct: 938 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 879

                                                                       
Query: 274 aagttgcgactggatctcatctgaagaatagtctgttttaatctcacgttggtgttcttc 333
           ||||||||||| ||||||| ||||||||  |||| ||||| ||| |||||||| ||||||
Sbjct: 878 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 819

                                                                       
Query: 334 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 393
           | |||||  ||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 818 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 759

                                                                       
Query: 394 tccaattcctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaata 453
           |||| |||||| |||||||| ||||||||||| |||| |||| ||||||||||||| |||
Sbjct: 758 tccagttcctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgata 699

                                                 
Query: 454 acatccaaaccttcatcctgcttcattctacgcatctc 491
           | |||||||||||||||||| |||||| | ||||||||
Sbjct: 698 atatccaaaccttcatcctgtttcattttgcgcatctc 661
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 401    cctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaataacatcca 460
              |||| |||||||| ||||||||||| |||| |||| ||||||||||||| |||| |||||
Sbjct: 187422 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 187363

                            
Query: 461    aaccttcatcctgc 474
              ||||||||||||||
Sbjct: 187362 aaccttcatcctgc 187349



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 217    ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 276
              |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 187892 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 187833

                                   
Query: 277    ttgcgactggatctcatctga 297
              |||||||| ||||||| ||||
Sbjct: 187832 ttgcgactagatctcagctga 187812



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                               
Query: 355    accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 403
              ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 187563 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 187515
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>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10,
             complete sequence
          Length = 116469

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 401   cctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaataacatcca 460
             |||| |||||||| ||||||||||| |||| |||| ||||||||||||| |||| |||||
Sbjct: 24911 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 24852

                           
Query: 461   aaccttcatcctgc 474
             ||||||||||||||
Sbjct: 24851 aaccttcatcctgc 24838



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                         
Query: 217   ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 276
             |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 25381 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 25322

                                  
Query: 277   ttgcgactggatctcatctga 297
             |||||||| ||||||| ||||
Sbjct: 25321 ttgcgactagatctcagctga 25301



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 355   accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 403
             ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 25052 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 25004
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 401      cctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaataacatcca 460
                |||| |||||||| ||||||||||| |||| |||| ||||||||||||| |||| |||||
Sbjct: 27312454 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 27312395

                              
Query: 461      aaccttcatcctgc 474
                ||||||||||||||
Sbjct: 27312394 aaccttcatcctgc 27312381



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 217      ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 276
                |||||||| || || || |||||||| || |||||||||||||| || || |||||||||
Sbjct: 27312924 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 27312865

                                     
Query: 277      ttgcgactggatctcatctga 297
                |||||||| ||||||| ||||
Sbjct: 27312864 ttgcgactagatctcagctga 27312844



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 355      accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 403
                ||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 27312595 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 27312547
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>ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS 71) AT3G09740
           (SYP71) mRNA, complete cds
          Length = 1229

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 367 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 426
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 759 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 700

                  
Query: 427 ttcaaag 433
           |||||||
Sbjct: 699 ttcaaag 693
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>gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, complete cds
          Length = 1143

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 367 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 426
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 743 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 684

                  
Query: 427 ttcaaag 433
           |||||||
Sbjct: 683 ttcaaag 677
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>gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds
          Length = 801

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 367 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 426
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 638 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 579

                  
Query: 427 ttcaaag 433
           |||||||
Sbjct: 578 ttcaaag 572
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>gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 71 (SYP71) mRNA, complete
           cds
          Length = 1033

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                       
Query: 367 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 426
           |||||||||||||  |||||||| ||||||| ||||||||||||||| || |||||||||
Sbjct: 675 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 616

                  
Query: 427 ttcaaag 433
           |||||||
Sbjct: 615 ttcaaag 609
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>emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB63ZG09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1147

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 367 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 426
           |||||||||||||  ||||||||  ||| || ||||||||||||||  || |||||||||
Sbjct: 742 atttcatccatcagtggaacttgtttattcagttcctcgttcatattagaagccatgttc 683

                  
Query: 427 ttcaaag 433
           |||||||
Sbjct: 682 ttcaaag 676
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>emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11
          Length = 91274

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 238   ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctga 297
             ||||| || |||||||| || | |||||||||||||||||| || ||||||| |||||||
Sbjct: 42227 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctga 42286

              
Query: 298   a 298
             |
Sbjct: 42287 a 42287
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>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
          Length = 110895

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                         
Query: 401   cctcgttcatatccgatgccatgttcttcaaagttgccagcccttcaccaataacatcca 460
             |||||||||||||   ||||||||| ||||||||  |||  |||||  |||| |||||||
Sbjct: 93547 cctcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatcca 93606

                         
Query: 461   aaccttcatcct 472
             ||||||||||||
Sbjct: 93607 aaccttcatcct 93618



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 370   tcatccatcaagggaacttgcctatccaattcct 403
             ||||||||||  |||||||||||||| |||||||
Sbjct: 93435 tcatccatcagtggaacttgcctatcaaattcct 93468
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>ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS 72) AT3G45280
           (SYP72) mRNA, complete cds
          Length = 872

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 238 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 296
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 319 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 378
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666

                                           
Query: 379 aagggaacttgcctatccaattcctcgttcat 410
           || || |||||| | || | ||||||||||||
Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
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>gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syntaxin 72
           (At3g45280) mRNA, complete cds
          Length = 804

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 238 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 296
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 770 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 712



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 319 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 378
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 689 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 630

                                           
Query: 379 aagggaacttgcctatccaattcctcgttcat 410
           || || |||||| | || | ||||||||||||
Sbjct: 629 aatgggacttgcttgtcaagttcctcgttcat 598
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>gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 72 (SYP72) mRNA, complete
           cds
          Length = 872

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 238 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 296
           ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||
Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 319 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 378
           |||||||| ||||||| ||| | | |||||| ||| |||||    |||||||| ||||||
Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666

                                           
Query: 379 aagggaacttgcctatccaattcctcgttcat 410
           || || |||||| | || | ||||||||||||
Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
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>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete
             sequence
          Length = 107603

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 401   cctcgttcatatccgatgccatgttcttcaaag 433
             ||||||||||||| || ||||||||||||||||
Sbjct: 89192 cctcgttcatatcagaagccatgttcttcaaag 89160



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 367   atttcatccatcaagggaacttgcctatccaattcct 403
             |||||||||||||  |||||||| ||||||| |||||
Sbjct: 89310 atttcatccatcagtggaacttgtctatccagttcct 89274
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>ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS 73) AT3G61450
           (SYP73) mRNA, complete cds
          Length = 884

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 262 atgtcgatgcagaagttgcgactggatctca 292
           ||||| |||||||||||||| ||||||||||
Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
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>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19
          Length = 95993

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 262   atgtcgatgcagaagttgcgactggatctca 292
             ||||| |||||||||||||| ||||||||||
Sbjct: 33946 atgtctatgcagaagttgcggctggatctca 33916
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>gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 73 (SYP73) mRNA, complete
           cds
          Length = 884

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 262 atgtcgatgcagaagttgcgactggatctca 292
           ||||| |||||||||||||| ||||||||||
Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
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>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete
             sequence
          Length = 204907

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 371   catccatcaagggaacttgcct 392
             ||||||||||||||||||||||
Sbjct: 64051 catccatcaagggaacttgcct 64072
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>gb|AC103673.8| Mus musculus chromosome 1, clone RP24-336F10, complete sequence
          Length = 187158

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 415    gatgccatgttcttcaaagtt 435
              |||||||||||||||||||||
Sbjct: 123155 gatgccatgttcttcaaagtt 123175
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>gb|AC110247.9| Mus musculus chromosome 1, clone RP23-254H20, complete sequence
          Length = 209326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   gatgccatgttcttcaaagtt 435
             |||||||||||||||||||||
Sbjct: 55925 gatgccatgttcttcaaagtt 55945
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>gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 239
            of 251 of the complete chromosome
          Length = 13083

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 362  catccatttcatccatcaagg 382
            |||||||||||||||||||||
Sbjct: 8970 catccatttcatccatcaagg 8990
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>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 360     gtcatccatttcatccatcaa 380
               |||||||||||||||||||||
Sbjct: 3007112 gtcatccatttcatccatcaa 3007132
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>ref|NM_101867.1| Arabidopsis thaliana hydrolase, acting on ester bonds / lipase/
            structural constituent of cell wall AT1G20130 mRNA,
            complete cds
          Length = 3021

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   ataataataatctaacaaca 65
            ||||||||||||||||||||
Sbjct: 1457 ataataataatctaacaaca 1476
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>ref|XM_638730.1| Dictyostelium discoideum hypothetical protein (DDB0217625), partial
            mRNA
          Length = 6324

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 46   ataataataatctaacaacaccat 69
            ||||||||||| ||||||||||||
Sbjct: 1712 ataataataatataacaacaccat 1735
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     aatgcaagacactaccgact 172
               ||||||||||||||||||||
Sbjct: 2310266 aatgcaagacactaccgact 2310247
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>gb|AY370873.1| Yersinia intermedia strain ATCC 29909 gyrase B (gyrB) gene, partial
           cds
          Length = 506

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 186 aagtttccagaccttcaccaataacatc 213
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 153     aatgcaagacactaccgact 172
               ||||||||||||||||||||
Sbjct: 2161439 aatgcaagacactaccgact 2161420
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>emb|AJ639641.1| Yersinia intermedia partial gyrB gene for DNA gyrase subunit B,
           type strain CNY 3953T
          Length = 1038

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 183 aagtttccagaccttcaccaataacatc 210
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>emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, complete sequence
          Length = 261943

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    caaaccttcatcctgcttca 478
              ||||||||||||||||||||
Sbjct: 120187 caaaccttcatcctgcttca 120206
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>gb|AC116633.4| Homo sapiens BAC clone RP11-452C8 from 4, complete sequence
          Length = 136725

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   catcaagggaacttgcctat 394
             ||||||||||||||||||||
Sbjct: 40591 catcaagggaacttgcctat 40572
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>gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, complete sequence
          Length = 160766

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     cacatataatcatcactgcttcat 37
              ||||||||||||||||| ||||||
Sbjct: 109372 cacatataatcatcactccttcat 109395
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>gb|AC084834.4| Homo sapiens chromosome 8, clone RP11-107M13, complete sequence
          Length = 153304

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     cacatataatcatcactgcttcat 37
              ||||||||||||||||| ||||||
Sbjct: 149068 cacatataatcatcactccttcat 149045
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>gb|AY332935.1| Yersinia intermedia strain WS 58/02 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 530

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 166 aagtttccagaccttcaccaataacatc 193
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>gb|AY332933.1| Yersinia intermedia strain WE 57/93 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 500

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 167 aagtttccagaccttcaccaataacatc 194
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>gb|AY332932.1| Yersinia intermedia strain WE 24/02 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 482

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 138 aagtttccagaccttcaccaataacatc 165
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>gb|AY332931.1| Yersinia intermedia strain WA 11/94 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 510

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 166 aagtttccagaccttcaccaataacatc 193
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>gb|AY332930.1| Yersinia intermedia strain ATCC 29909 DNA gyrase subunit B (gyrB)
           gene, partial cds
          Length = 473

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 162 aagtttccagaccttcaccaataacatc 189
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>gb|AY332929.1| Yersinia intermedia strain 955 DNA gyrase subunit B (gyrB) gene,
           partial cds
          Length = 494

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 431 aagttgccagcccttcaccaataacatc 458
           ||||| |||| |||||||||||||||||
Sbjct: 144 aagtttccagaccttcaccaataacatc 171
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>emb|BX276087.14| Zebrafish DNA sequence from clone CH211-270M20 in linkage group 10,
             complete sequence
          Length = 167208

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    attacacagatgagacgaaa 92
             ||||||||||||||||||||
Sbjct: 23810 attacacagatgagacgaaa 23791
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 33      ttcatcaacaagcataataataatctaa 60
               |||||| |||| ||||||||||||||||
Sbjct: 8273203 ttcatctacaaccataataataatctaa 8273176
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>gb|AC139070.3| Homo sapiens chromosome 18, clone XXfos-83061E10, complete sequence
          Length = 38363

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     gcaggtcaacacacatataatcat 26
             |||||||||||||||| |||||||
Sbjct: 18020 gcaggtcaacacacatttaatcat 18043
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>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4,
              complete sequence
          Length = 413138

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     ataataataatctaacaacaccat 69
              ||||||||||| ||||||||||||
Sbjct: 125910 ataataataatataacaacaccat 125933
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>gb|AC137738.5| Homo sapiens chromosome 18, clone CTD-2382L18, complete sequence
          Length = 38162

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     gcaggtcaacacacatataatcat 26
             |||||||||||||||| |||||||
Sbjct: 15098 gcaggtcaacacacatttaatcat 15075
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>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 92710

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    ataataataatctaacaaca 65
             ||||||||||||||||||||
Sbjct: 30358 ataataataatctaacaaca 30339
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 33    ttcatcaacaagcataataataatctaa 60
             |||||| |||| ||||||||||||||||
Sbjct: 66708 ttcatctacaaccataataataatctaa 66681
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>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
             complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    attacacagatgagacgaaa 92
             ||||||||||||||||||||
Sbjct: 70544 attacacagatgagacgaaa 70525
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>emb|AJ412756.1|AED412756 Allium eduardii 5.8S rRNA gene, internal transcribed spacer 1
           (ITS1) and internal transcribed spacer 2 (ITS2)
          Length = 646

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 accttcatcctgcttcattc 481
           ||||||||||||||||||||
Sbjct: 103 accttcatcctgcttcattc 122
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>emb|AJ411959.1|AED411959 Allium eduardii 5.8S ribosomal RNA, internal transcribed spacer 1
           and internal transcribed spacer 2
          Length = 647

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 accttcatcctgcttcattc 481
           ||||||||||||||||||||
Sbjct: 103 accttcatcctgcttcattc 122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,633,320
Number of Sequences: 3902068
Number of extensions: 5633320
Number of successful extensions: 83962
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83754
Number of HSP's gapped (non-prelim): 208
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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