Clone Name | rbart34h07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226417 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaagttttattccatcctt 31 |||||||||||||||||||| Sbjct: 66088 aaaagttttattccatcctt 66069
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaagttttattccatcctt 31 |||||||||||||||||||| Sbjct: 17015 aaaagttttattccatcctt 16996
>gb|AF038110.1|AF038110 HIV-1 isolate TZB0060 from Tanzania, gp120 C2-C4 region (env) gene, partial cds Length = 664 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 207 aaagttttattccatccttt 188
>gb|AY619849.1| HIV-1 isolate C4.8D clone 8 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 260 aaagttttattccatccttt 241
>gb|AY619846.1| HIV-1 isolate C4.53D clone 53 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 260 aaagttttattccatccttt 241
>gb|AY619844.1| HIV-1 isolate C4.51D clone 51 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619840.1| HIV-1 isolate C4.43D clone 43 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 260 aaagttttattccatccttt 241
>gb|AY619834.1| HIV-1 isolate C4.3D clone 3 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619825.1| HIV-1 isolate C4.12bD clone 12 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619824.1| HIV-1 isolate C4.12aD clone 12 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619821.1| HIV-1 isolate C4.1D clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 260 aaagttttattccatccttt 241
>gb|AY619808.1| HIV-1 isolate C2.6D clone 6 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619807.1| HIV-1 isolate C2.51D clone 51 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 257 aaagttttattccatccttt 238
>gb|AY619776.1| HIV-1 isolate M3.31D clone 31 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 260 aaagttttattccatccttt 241
>gb|AF201804.1|AF201804 HIV-1 clone H35-10 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201803.1|AF201803 HIV-1 clone H35-9 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201802.1|AF201802 HIV-1 clone H35-8 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201800.1|AF201800 HIV-1 clone H35-6 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201799.1|AF201799 HIV-1 clone H35-5 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201798.1|AF201798 HIV-1 clone H35-4 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201797.1|AF201797 HIV-1 clone H35-3 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201796.1|AF201796 HIV-1 clone H35-2 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AF201795.1|AF201795 HIV-1 clone H35-1 from Uganda, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 317 aaagttttattccatccttt 298
>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence Length = 230313 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaagttttattccatcctt 31 |||||||||||||||||||| Sbjct: 220791 aaaagttttattccatcctt 220810
>gb|U16042.1|HIV1U16042 Human immunodeficiency virus type 1 clone XSH141L17 envelope glycoprotein (env) mRNA, V1-V5 regions, partial cds Length = 1075 Score = 40.1 bits (20), Expect = 0.28 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatccttt 32 |||||||||||||||||||| Sbjct: 680 aaagttttattccatccttt 661
>gb|DQ410403.1| HIV-1 isolate H26v1e14.2 from USA envelope glycoprotein (env) gene, complete cds Length = 2547 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1013 aaagttttattccatcctt 995
>gb|DQ410402.1| HIV-1 isolate H26v1e3.1 from USA envelope glycoprotein (env) gene, complete cds Length = 2547 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1013 aaagttttattccatcctt 995
>gb|DQ410394.1| HIV-1 isolate H26v2ed11 from USA envelope glycoprotein (env) gene, complete cds Length = 2547 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1013 aaagttttattccatcctt 995
>gb|DQ410389.1| HIV-1 isolate H26v2ed12 from USA envelope glycoprotein (env) gene, complete cds Length = 2547 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1013 aaagttttattccatcctt 995
>gb|DQ410388.1| HIV-1 isolate H26v2ed10 from USA nonfunctional envelope glycoprotein (env) gene, complete sequence Length = 2547 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1013 aaagttttattccatcctt 995
>gb|AY352657.1| HIV-1 isolate UG266 from Uganda, complete genome Length = 8986 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 6607 aaagttttattccatcctt 6589
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete sequence Length = 156282 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gttttattccatcctttgg 34 ||||||||||||||||||| Sbjct: 53740 gttttattccatcctttgg 53758
>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence Length = 148259 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 ttattccatcctttggatc 37 ||||||||||||||||||| Sbjct: 90017 ttattccatcctttggatc 90035
>gb|AF350904.1| Partula affinis haplotype A1 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 685 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 170 aaagttttattccatcctt 188
>gb|AY619852.1| HIV-1 isolate C4.16bD clone 16 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619845.1| HIV-1 isolate C4.52D clone 52 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619839.1| HIV-1 isolate C4.42D clone 42 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619837.1| HIV-1 isolate C4.35D clone 35 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619835.1| HIV-1 isolate C4.31D clone 31 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619833.1| HIV-1 isolate C4.29D clone 29 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619831.1| HIV-1 isolate C4.27D clone 27 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619828.1| HIV-1 isolate C4.19D clone 19 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619826.1| HIV-1 isolate C4.16aD clone 16 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619817.1| HIV-1 isolate C1.R5.pi1 clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619812.1| HIV-1 isolate C1.R5.pi2 clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619809.1| HIV-1 isolate C2.9D clone 9 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619800.1| HIV-1 isolate C2.30bD clone 30 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619799.1| HIV-1 isolate C2.30aD clone 30 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619798.1| HIV-1 isolate C2.29D clone 29 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619797.1| HIV-1 isolate C2.21D clone 21 from Sweden envelope glycoprotein (env) gene, partial cds Length = 354 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 257 aaagttttattccatcctt 239
>gb|AY619796.1| HIV-1 isolate C1.7D clone 7 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619795.1| HIV-1 isolate C1.53D clone 53 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619794.1| HIV-1 isolate C1.50D clone 50 from Sweden envelope glycoprotein (env) gene, partial cds Length = 356 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619793.1| HIV-1 isolate C1.47D clone 47 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619792.1| HIV-1 isolate C1.46D clone 46 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619791.1| HIV-1 isolate C1.40D clone 40 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619790.1| HIV-1 isolate C1.4D clone 4 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619789.1| HIV-1 isolate C1.38D clone 38 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619788.1| HIV-1 isolate C1.32D clone 32 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619787.1| HIV-1 isolate C1.31D clone 31 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619786.1| HIV-1 isolate C1.30D clone 30 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619785.1| HIV-1 isolate C1.28D clone 28 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619784.1| HIV-1 isolate C1.27bD clone 27 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619783.1| HIV-1 isolate C1.27aD clone 27 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619782.1| HIV-1 isolate C1.19D clone 19 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619781.1| HIV-1 isolate C1.14D clone 14 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619780.1| HIV-1 isolate C1.13D clone 13 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619779.1| HIV-1 isolate C1.11bD clone 11 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619778.1| HIV-1 isolate C1.11aD clone 11 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619777.1| HIV-1 isolate M3.R5.pi clone 3 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619774.1| HIV-1 isolate M3.43D clone 43 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619772.1| HIV-1 isolate M3.5D clone 5 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619771.1| HIV-1 isolate M3.3D clone 3 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619769.1| HIV-1 isolate M3.23D clone 23 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619768.1| HIV-1 isolate M3.30D clone 30 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619766.1| HIV-1 isolate M4.X4.ci clone 4 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619763.1| HIV-1 isolate M1.X4.pi clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619761.1| HIV-1 isolate M2.16D clone 16 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619760.1| HIV-1 isolate M2.43D clone 43 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619759.1| HIV-1 isolate M2.7D clone 7 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619758.1| HIV-1 isolate M2.50D clone 50 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619757.1| HIV-1 isolate M2.6D clone 6 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619756.1| HIV-1 isolate M2.47D clone 47 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619755.1| HIV-1 isolate M2.38D clone 38 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619754.1| HIV-1 isolate M2.37D clone 37 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619752.1| HIV-1 isolate M2.3D clone 3 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619749.1| HIV-1 isolate M2.21D clone 21 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619748.1| HIV-1 isolate M2.2D clone 2 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619746.1| HIV-1 isolate M1.48D clone 48 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619745.1| HIV-1 isolate M1.5D clone 5 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619740.1| HIV-1 isolate M1.32D clone 32 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619739.1| HIV-1 isolate M1.31D clone 31 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619736.1| HIV-1 isolate M1.25D clone 25 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619735.1| HIV-1 isolate M1.21D clone 21 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619732.1| HIV-1 isolate M2.1D clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619731.1| HIV-1 isolate M1.2bD clone 2 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|AY619730.1| HIV-1 isolate M1.2aD clone 2 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 260 aaagttttattccatcctt 242
>gb|U56330.1|HIV1U56330 Human immunodeficiency virus type 1 clone 3B envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 618 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 218 aaagttttattccatcctt 200
>gb|U56312.1|HIV1U56312 Human immunodeficiency virus type 1 clone 3MP44 envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 636 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 242 aaagttttattccatcctt 224
>gb|U56311.1|HIV1U56311 Human immunodeficiency virus type 1 clone 3MP43 envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 642 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 242 aaagttttattccatcctt 224
>gb|U56310.1|HIV1U56310 Human immunodeficiency virus type 1 clone 3MP41 envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 642 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 242 aaagttttattccatcctt 224
>gb|U56306.1|HIV1U56306 Human immunodeficiency virus type 1 clone 3MP45 envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 642 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 242 aaagttttattccatcctt 224
>gb|U56305.1|HIV1U56305 Human immunodeficiency virus type 1, clone 3MP42 envelope glycoprotein, C2-V5 region (env) gene, partial cds Length = 642 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 242 aaagttttattccatcctt 224
>gb|U56376.1|HIVU56376 Human immunodeficiency virus type 1 envelope glycoprotein gp120 V3 region (env) gene, partial cds Length = 243 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 173 aaagttttattccatcctt 155
>gb|L22947.1|HIV1UG266A Human immunodeficiency virus type 1 (UG266) proviral DNA encoding env, tat, vpu, rev, and nef genes Length = 3026 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 1187 aaagttttattccatcctt 1169
>gb|M98897.1|HIV3070E Human immunodeficiency virus type 1 (Uganda 3070e/1990), partial env cds, V3 loop Length = 198 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 171 aaagttttattccatcctt 153
>gb|M98895.1|HIV3070B Human immunodeficiency virus type 1 (Uganda 3070b/1990), partial env cds, V3 loop Length = 224 Score = 38.2 bits (19), Expect = 1.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcctt 31 ||||||||||||||||||| Sbjct: 206 aaagttttattccatcctt 188
>gb|AF016341.1| HIV-1 strain UG95308 from Uganda envelope glycoprotein (env) gene, partial cds Length = 339 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 194 aaagttttattccatcct 177
>gb|AF016333.1| HIV-1 strain UG95035 from Uganda envelope glycoprotein (env) gene, partial cds Length = 342 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 194 aaagttttattccatcct 177
>gb|AY669754.1| HIV-1 isolate 92UG001 from Uganda envelope glycoprotein (env) gene, partial cds Length = 2574 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1031 aaagttttattccatcct 1014
>gb|AY669752.1| HIV-1 isolate 94UG114 from Uganda envelope glycoprotein (env) gene, partial cds Length = 2526 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 989 aaagttttattccatcct 972
>gb|AC149669.2| Bos taurus BAC CH240-57J21 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 227069 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 21 attccatcctttggatcc 38 |||||||||||||||||| Sbjct: 1334 attccatcctttggatcc 1351
>gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, complete sequence Length = 169596 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 attccatcctttggatcc 38 |||||||||||||||||| Sbjct: 57123 attccatcctttggatcc 57106
>gb|DQ027803.1| HIV-1 isolate QB609_101M_B14 from Kenya envelope glycoprotein (env) gene, partial cds Length = 1042 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 648 aaagttttattccatcct 631
>gb|AY932265.1| HIV-1 isolate TZBDE308-4-11 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 621 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY932264.1| HIV-1 isolate TZBDE308-4-8 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 621 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY932263.1| HIV-1 isolate TZBDE308-4-7 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 621 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY932262.1| HIV-1 isolate TZBDE308-4-6 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 621 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY932261.1| HIV-1 isolate TZBDE308-4-5 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 621 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY932231.1| HIV-1 isolate TZPRE679 from Tanzania nonfunctional envelope glycoprotein (env) gene, partial sequence Length = 589 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 209 aaagttttattccatcct 192
>gb|AY931714.1| HIV-1 isolate TZMDE663-2-9 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931713.1| HIV-1 isolate TZMDE663-2-8 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931712.1| HIV-1 isolate TZMDE663-2-6 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931711.1| HIV-1 isolate TZMDE663-2-5 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931710.1| HIV-1 isolate TZMDE663-2-4 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931709.1| HIV-1 isolate TZMDE663-2-3 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931708.1| HIV-1 isolate TZMDE663-2-2 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931707.1| HIV-1 isolate TZMDE663-2-12 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 644 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931706.1| HIV-1 isolate TZMDE663-2-11 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931705.1| HIV-1 isolate TZMDE663-2-10 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AY931704.1| HIV-1 isolate TZMDE663-2-1 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 645 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>emb|AJ320484.1|HIM320484 Human immunodeficiency virus type 1 complete proviral genome, strain 92UG001 Length = 9745 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 7281 aaagttttattccatcct 7264
>gb|L35458.1|HIV1092AED HIV-1 isolate D1BU009W.01092aED env (env) gene, partial cds Length = 1461 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|L35457.1|HIV1062AED HIV-1 isolate D1BU009W.01062aED env (env) gene, partial cds Length = 1458 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|L35456.1|HIV1042AED HIV-1 isolate D1BU009W.01042aED env (env) gene, partial cds Length = 1458 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|L35454.1|HIV1022AED HIV-1 isolate D1BU009W.01022aED env (env) gene, partial cds Length = 1449 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1004 aaagttttattccatcct 987
>gb|L35453.1|HIV1012AED HIV-1 isolate D1BU009W.01012aED env (env) gene, partial cds Length = 1458 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|L35452.1|HIV1DI2ACD HIV-1 isolate D1BU009W.01di2aCD env (env) gene, partial cds Length = 1458 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence Length = 144324 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 gaaaagttttattccatc 28 |||||||||||||||||| Sbjct: 54210 gaaaagttttattccatc 54227
>gb|AF404025.1| HIV-1 isolate 435 from Netherlands envelope glycoprotein (env) gene, partial cds Length = 264 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF403943.1| HIV-1 isolate 247 from Netherlands envelope glycoprotein (env) gene, partial cds Length = 261 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 212 aaagttttattccatcct 195
>gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromosome ul, complete sequence Length = 212965 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 ttttattccatcctttgg 34 |||||||||||||||||| Sbjct: 189183 ttttattccatcctttgg 189166
>gb|DQ387781.1| HIV-1 isolate TI2-P5 from Puerto Rico envelope glycoprotein (env) gene, partial cds Length = 485 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 221 aaagttttattccatcct 204
>gb|AF283157.1|AF283157 HIV-1 isolate TZB0162 from Tanzania, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 669 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 209 aaagttttattccatcct 192
>gb|AF283111.1|AF283111 HIV-1 isolate TZB0116 from Tanzania, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 660 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromosome ul, complete sequence Length = 250495 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 ttttattccatcctttgg 34 |||||||||||||||||| Sbjct: 118404 ttttattccatcctttgg 118387
>gb|AF364118.1|AF364118 HIV-1 isolate spleen S100 clone 1 from Kenya envelope glycoprotein gene, partial cds Length = 1188 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 686 aaagttttattccatcct 669
>gb|AF038100.1|AF038100 HIV-1 isolate TZB0050 from Tanzania, gp120 C2-C4 region (env) gene, partial cds Length = 649 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 207 aaagttttattccatcct 190
>gb|AY619775.1| HIV-1 isolate M3.26D clone 26 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619773.1| HIV-1 isolate M3.7D clone 7 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619770.1| HIV-1 isolate M3.28D clone 28 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619767.1| HIV-1 isolate M4.X4.pi clone 4 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619764.1| HIV-1 isolate M2.X4.ci clone 2 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619762.1| HIV-1 isolate M1.X4.ci clone 1 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619753.1| HIV-1 isolate M2.31D clone 31 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619750.1| HIV-1 isolate M2.28D clone 28 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619747.1| HIV-1 isolate M1.8D clone 8 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619744.1| HIV-1 isolate M1.41D clone 41 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619743.1| HIV-1 isolate M1.3bD clone 3 from Sweden nonfunctional envelope glycoprotein (env) gene, partial sequence Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619742.1| HIV-1 isolate M1.3aD clone 3 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619741.1| HIV-1 isolate M1.34D clone 34 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619738.1| HIV-1 isolate M1.30D clone 30 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619737.1| HIV-1 isolate M1.29D clone 29 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619734.1| HIV-1 isolate M1.19D clone 19 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|AY619733.1| HIV-1 isolate M1.11D clone 11 from Sweden envelope glycoprotein (env) gene, partial cds Length = 357 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 260 aaagttttattccatcct 243
>gb|U76146.1|HIVU76146 HIV-1 strain SE8384 from Uganda, envelope glycoprotein V3 region (env) pseudogene, partial cds Length = 254 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 211 aaagttttattccatcct 194
>gb|AY123861.1| Human immunodeficiency virus 1 isolate TZMoE47115 from Tanzania envelope glycoprotein (env) gene, partial cds Length = 660 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 206 aaagttttattccatcct 189
>gb|AF188912.1|AF188912 HIV-1 isolate mother NT4 from Uganda, envelope, glycoprotein (env) gene, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF188905.1|AF188905 HIV-1 isolate mother T7 from Uganda, envelope, glycoprotein (env) gene, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AY146223.1| HIV-1 isolate 144eMa88 from Malawi envelope glycoprotein (env) gene, partial cds Length = 456 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 380 aaagttttattccatcct 363
>gb|AY146222.1| HIV-1 isolate 119eMa88 from Malawi envelope glycoprotein (env) gene, partial cds Length = 456 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 380 aaagttttattccatcct 363
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1337178 aaagttttattccatcct 1337161
>gb|AF086686.1|AF086686 HIV-1 clone B5.10 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086685.1|AF086685 HIV-1 clone B5.9 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086684.1|AF086684 HIV-1 clone B5.8 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086683.1|AF086683 HIV-1 clone B5.7 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086682.1|AF086682 HIV-1 clone B5.6 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086681.1|AF086681 HIV-1 clone B5.5 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086680.1|AF086680 HIV-1 clone B5.4 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086679.1|AF086679 HIV-1 clone B5.3 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086678.1|AF086678 HIV-1 clone B5.2 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086677.1|AF086677 HIV-1 clone B5.1 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086666.1|AF086666 HIV-1 clone B3.10 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086665.1|AF086665 HIV-1 clone B3.9 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086664.1|AF086664 HIV-1 clone B3.8 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086663.1|AF086663 HIV-1 clone B3.7 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086662.1|AF086662 HIV-1 clone B3.6 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086660.1|AF086660 HIV-1 clone B3.4 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086659.1|AF086659 HIV-1 clone B3.3 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086658.1|AF086658 HIV-1 clone B3.2 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086657.1|AF086657 HIV-1 clone B3.1 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086656.1|AF086656 HIV-1 clone B2.10 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086655.1|AF086655 HIV-1 clone B2.9 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086654.1|AF086654 HIV-1 clone B2.8 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086653.1|AF086653 HIV-1 clone B2.7 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086652.1|AF086652 HIV-1 clone B2.6 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086651.1|AF086651 HIV-1 clone B2.5 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086650.1|AF086650 HIV-1 clone B2.4 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086648.1|AF086648 HIV-1 clone B2.2 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086647.1|AF086647 HIV-1 clone B2.1 from Uganda, envelope glycoprotein gp120, V3 region (env) mRNA, partial cds Length = 271 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>dbj|AB097484.1| Human immunodeficiency virus 1 proviral c2v3 gene for envelope glycoprotein, partial cds, strain:Uz11-Hetero Length = 308 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 224 aaagttttattccatcct 207
>gb|AF484504.1| HIV-1 isolate 98UG57130 from Uganda, partial genome Length = 8827 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 6459 aaagttttattccatcct 6442
>gb|AF484483.1| HIV-1 isolate 99UGB32394 from Uganda, partial genome Length = 8750 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 6431 aaagttttattccatcct 6414
>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19, complete sequence Length = 72609 Score = 36.2 bits (18), Expect = 4.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 3 acacaaacgaaaagttttattc 24 ||||||| |||||||||||||| Sbjct: 10134 acacaaaggaaaagttttattc 10155
>gb|AF086780.1|AF086780 HIV-1 clone Ib20 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086779.1|AF086779 HIV-1 clone Ib19 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086778.1|AF086778 HIV-1 clone Ib18 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086777.1|AF086777 HIV-1 clone Ib17 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086776.1|AF086776 HIV-1 clone Ib16 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086775.1|AF086775 HIV-1 clone Ib15 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086773.1|AF086773 HIV-1 clone Ib13 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086772.1|AF086772 HIV-1 clone Ib12 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF086771.1|AF086771 HIV-1 clone Ib11 from Uganda, envelope glycoprotein, V3 region (env) gene, partial cds Length = 245 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF082123.1|AF082123 HIV-1 from Uganda clone I10 envelope glycoprotein (env) gene, partial cds Length = 280 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF082122.1|AF082122 HIV-1 from Uganda clone I9 envelope glycoprotein (env) gene, partial cds Length = 280 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF082121.1|AF082121 HIV-1 from Uganda clone I8 envelope glycoprotein (env) gene, partial cds Length = 280 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AF082120.1|AF082120 HIV-1 from Uganda clone I7 envelope glycoprotein (env) gene, partial cds Length = 280 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|AY494966.1| HIV-1 isolate C2-94UG114 from Uganda envelope glycoprotein (env) gene, complete cds Length = 2529 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 989 aaagttttattccatcct 972
>gb|AY494965.1| HIV-1 isolate C2-92UG001 from Uganda envelope glycoprotein (env) gene, complete cds Length = 2580 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1034 aaagttttattccatcct 1017
>gb|U88824.1|U88824 HIV-1 isolate 94UG114 from Uganda complete genome Length = 8952 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 6573 aaagttttattccatcct 6556
>gb|U36887.1|HIV1U36887 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene, complete cds Length = 2583 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1052 aaagttttattccatcct 1035
>gb|U36886.1|HIV1U36886 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene, complete cds Length = 2583 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1052 aaagttttattccatcct 1035
>gb|U36884.1|HIV1U36884 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene, complete cds Length = 2583 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1052 aaagttttattccatcct 1035
>gb|AF074069.1|AF074069 HIV-1 clone 5.5 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074068.1|AF074068 HIV-1 clone 5.4 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074067.1|AF074067 HIV-1 clone 5.3 from Uganda, gp120 (env) gene, partial cds Length = 194 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074066.1|AF074066 HIV-1 clone 5.2 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074065.1|AF074065 HIV-1 clone 5.1 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074064.1|AF074064 HIV-1 clone 4.5 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074063.1|AF074063 HIV-1 clone 4.4 from Uganda, gp120 (env) gene, partial cds Length = 192 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074062.1|AF074062 HIV-1 clone 4.3 from Uganda, gp120 (env) gene, partial cds Length = 193 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074061.1|AF074061 HIV-1 clone 4.2 from Uganda, gp120 (env) gene, partial cds Length = 192 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|AF074060.1|AF074060 HIV-1 clone 4.1 from Uganda, gp120 (env) gene, partial cds Length = 192 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 173 aaagttttattccatcct 156
>gb|U69992.1|HIVU69992 HIV-1 strain CMR105 from Cameroon, envelope glycoprotein (env), C2V3C3 region, partial cds Length = 384 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 227 aaagttttattccatcct 210
>gb|U76127.1|HIVU76127 HIV-1 strain SE7386 from Uganda, envelope glycoprotein V3 region (env) gene, partial cds Length = 255 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 209 aaagttttattccatcct 192
>gb|U39254.1|HIV1U39254 Human immunodeficiency virus type 1 isolate BU/91/09, envelope glycoprotein (env) gene, complete cds Length = 2532 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1013 aaagttttattccatcct 996
>gb|L01334.1|HIVTAN73X Human immunodeficiency virus type 1 (TAN7-3) V3 neutralizing domain Length = 275 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 214 aaagttttattccatcct 197
>gb|L01333.1|HIVTAN72X Human immunodeficiency virus type 1 (TAN7-2) V3 neutralizing domain Length = 275 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 214 aaagttttattccatcct 197
>gb|L01332.1|HIVTAN71X Human immunodeficiency virus type 1 (TAN7-1) V3 neutralizing domain Length = 276 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 215 aaagttttattccatcct 198
>gb|L01328.1|HIVTAN53X Human immunodeficiency virus type 1 (TAN5-3) V3 neutralizing domain Length = 275 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 214 aaagttttattccatcct 197
>gb|L01327.1|HIVTAN52X Human immunodeficiency virus type 1 (TAN5-2) V3 neutralizing domain Length = 275 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 214 aaagttttattccatcct 197
>gb|L01326.1|HIVTAN51X Human immunodeficiency virus type 1 (TAN5-1) V3 neutralizing domain Length = 275 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 214 aaagttttattccatcct 197
>gb|U12986.1|HIV1U12986 Human immunodeficiency virus type 1, isolate K966 from Kenya, envelope glycoprotein (env) gene v3 region, partial cds Length = 252 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 218 aaagttttattccatcct 201
>gb|U12414.1|HIV1U12414 Human immunodeficiency virus type 1 isolate TZ080 from Tanzania, envelope glycoprotein (env) gene, V1-V3 region, partial cds Length = 408 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 293 aaagttttattccatcct 276
>gb|U12409.1|HIV1U12409 Human immunodeficiency virus type 1 isolate TZ017 from Tanzania, vpu protein (vpu) pseudogene, complete cds, and envelope glycoprotein (env) gene, V1-V3 region, partial cds Length = 1379 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1264 aaagttttattccatcct 1247
>gb|U12407.1|HIV1U12407 Human immunodeficiency virus type 1 isolate TZ012 from Tanzania, vpu protein (vpu) gene, complete cds, and envelope glycoprotein (env) gene, V1-V3 region, partial cds Length = 1372 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 1261 aaagttttattccatcct 1244
>gb|U16524.1|HIVI04D Human immunodeficiency virus type 1 patient I04, clone D, envelope glycoprotein (env) gene, V3 region, partial cds Length = 288 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 227 aaagttttattccatcct 210
>gb|M98971.1|HIV3121B Human immunodeficiency virus type 1 (Uganda 3121b/1990), partial env cds, V3 loop Length = 269 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 207 aaagttttattccatcct 190
>gb|M98970.1|HIV3121A Human immunodeficiency virus type 1 (Uganda 3121a/1990), partial env cds, V3 loop Length = 250 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 221 aaagttttattccatcct 204
>gb|M98969.1|HIV3120C Human immunodeficiency virus type 1 (Uganda 3120c/1990), partial env cds, V3 loop Length = 277 Score = 36.2 bits (18), Expect = 4.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 aaagttttattccatcct 30 |||||||||||||||||| Sbjct: 237 aaagttttattccatcct 220 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 410,715 Number of Sequences: 3902068 Number of extensions: 410715 Number of successful extensions: 112027 Number of sequences better than 10.0: 259 Number of HSP's better than 10.0 without gapping: 259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111711 Number of HSP's gapped (non-prelim): 316 length of query: 40 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 20 effective length of database: 17,155,003,908 effective search space: 343100078160 effective search space used: 343100078160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)