ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer... 40 0.28
2gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, com... 40 0.28
3gb|AF038110.1|AF038110 HIV-1 isolate TZB0060 from Tanzania, gp12... 40 0.28
4gb|AY619849.1| HIV-1 isolate C4.8D clone 8 from Sweden envelope ... 40 0.28
5gb|AY619846.1| HIV-1 isolate C4.53D clone 53 from Sweden envelop... 40 0.28
6gb|AY619844.1| HIV-1 isolate C4.51D clone 51 from Sweden envelop... 40 0.28
7gb|AY619840.1| HIV-1 isolate C4.43D clone 43 from Sweden envelop... 40 0.28
8gb|AY619834.1| HIV-1 isolate C4.3D clone 3 from Sweden envelope ... 40 0.28
9gb|AY619825.1| HIV-1 isolate C4.12bD clone 12 from Sweden envelo... 40 0.28
10gb|AY619824.1| HIV-1 isolate C4.12aD clone 12 from Sweden envelo... 40 0.28
11gb|AY619821.1| HIV-1 isolate C4.1D clone 1 from Sweden envelope ... 40 0.28
12gb|AY619808.1| HIV-1 isolate C2.6D clone 6 from Sweden envelope ... 40 0.28
13gb|AY619807.1| HIV-1 isolate C2.51D clone 51 from Sweden envelop... 40 0.28
14gb|AY619776.1| HIV-1 isolate M3.31D clone 31 from Sweden envelop... 40 0.28
15gb|AF201804.1|AF201804 HIV-1 clone H35-10 from Uganda, envelope ... 40 0.28
16gb|AF201803.1|AF201803 HIV-1 clone H35-9 from Uganda, envelope g... 40 0.28
17gb|AF201802.1|AF201802 HIV-1 clone H35-8 from Uganda, envelope g... 40 0.28
18gb|AF201800.1|AF201800 HIV-1 clone H35-6 from Uganda, envelope g... 40 0.28
19gb|AF201799.1|AF201799 HIV-1 clone H35-5 from Uganda, envelope g... 40 0.28
20gb|AF201798.1|AF201798 HIV-1 clone H35-4 from Uganda, envelope g... 40 0.28
21gb|AF201797.1|AF201797 HIV-1 clone H35-3 from Uganda, envelope g... 40 0.28
22gb|AF201796.1|AF201796 HIV-1 clone H35-2 from Uganda, envelope g... 40 0.28
23gb|AF201795.1|AF201795 HIV-1 clone H35-1 from Uganda, envelope g... 40 0.28
24gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complet... 40 0.28
25gb|U16042.1|HIV1U16042 Human immunodeficiency virus type 1 clone... 40 0.28
26gb|DQ410403.1| HIV-1 isolate H26v1e14.2 from USA envelope glycop... 38 1.1
27gb|DQ410402.1| HIV-1 isolate H26v1e3.1 from USA envelope glycopr... 38 1.1
28gb|DQ410394.1| HIV-1 isolate H26v2ed11 from USA envelope glycopr... 38 1.1
29gb|DQ410389.1| HIV-1 isolate H26v2ed12 from USA envelope glycopr... 38 1.1
30gb|DQ410388.1| HIV-1 isolate H26v2ed10 from USA nonfunctional en... 38 1.1
31gb|AY352657.1| HIV-1 isolate UG266 from Uganda, complete genome 38 1.1
32gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 38 1.1
33gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complet... 38 1.1
34gb|AF350904.1| Partula affinis haplotype A1 cytochrome b gene, p... 38 1.1
35gb|AY619852.1| HIV-1 isolate C4.16bD clone 16 from Sweden envelo... 38 1.1
36gb|AY619845.1| HIV-1 isolate C4.52D clone 52 from Sweden envelop... 38 1.1
37gb|AY619839.1| HIV-1 isolate C4.42D clone 42 from Sweden envelop... 38 1.1
38gb|AY619837.1| HIV-1 isolate C4.35D clone 35 from Sweden envelop... 38 1.1
39gb|AY619835.1| HIV-1 isolate C4.31D clone 31 from Sweden envelop... 38 1.1
40gb|AY619833.1| HIV-1 isolate C4.29D clone 29 from Sweden envelop... 38 1.1
41gb|AY619831.1| HIV-1 isolate C4.27D clone 27 from Sweden envelop... 38 1.1
42gb|AY619828.1| HIV-1 isolate C4.19D clone 19 from Sweden envelop... 38 1.1
43gb|AY619826.1| HIV-1 isolate C4.16aD clone 16 from Sweden envelo... 38 1.1
44gb|AY619817.1| HIV-1 isolate C1.R5.pi1 clone 1 from Sweden envel... 38 1.1
45gb|AY619812.1| HIV-1 isolate C1.R5.pi2 clone 1 from Sweden envel... 38 1.1
46gb|AY619809.1| HIV-1 isolate C2.9D clone 9 from Sweden envelope ... 38 1.1
47gb|AY619800.1| HIV-1 isolate C2.30bD clone 30 from Sweden envelo... 38 1.1
48gb|AY619799.1| HIV-1 isolate C2.30aD clone 30 from Sweden envelo... 38 1.1
49gb|AY619798.1| HIV-1 isolate C2.29D clone 29 from Sweden envelop... 38 1.1
50gb|AY619797.1| HIV-1 isolate C2.21D clone 21 from Sweden envelop... 38 1.1
51gb|AY619796.1| HIV-1 isolate C1.7D clone 7 from Sweden envelope ... 38 1.1
52gb|AY619795.1| HIV-1 isolate C1.53D clone 53 from Sweden envelop... 38 1.1
53gb|AY619794.1| HIV-1 isolate C1.50D clone 50 from Sweden envelop... 38 1.1
54gb|AY619793.1| HIV-1 isolate C1.47D clone 47 from Sweden envelop... 38 1.1
55gb|AY619792.1| HIV-1 isolate C1.46D clone 46 from Sweden envelop... 38 1.1
56gb|AY619791.1| HIV-1 isolate C1.40D clone 40 from Sweden envelop... 38 1.1
57gb|AY619790.1| HIV-1 isolate C1.4D clone 4 from Sweden envelope ... 38 1.1
58gb|AY619789.1| HIV-1 isolate C1.38D clone 38 from Sweden envelop... 38 1.1
59gb|AY619788.1| HIV-1 isolate C1.32D clone 32 from Sweden envelop... 38 1.1
60gb|AY619787.1| HIV-1 isolate C1.31D clone 31 from Sweden envelop... 38 1.1
61gb|AY619786.1| HIV-1 isolate C1.30D clone 30 from Sweden envelop... 38 1.1
62gb|AY619785.1| HIV-1 isolate C1.28D clone 28 from Sweden envelop... 38 1.1
63gb|AY619784.1| HIV-1 isolate C1.27bD clone 27 from Sweden envelo... 38 1.1
64gb|AY619783.1| HIV-1 isolate C1.27aD clone 27 from Sweden envelo... 38 1.1
65gb|AY619782.1| HIV-1 isolate C1.19D clone 19 from Sweden envelop... 38 1.1
66gb|AY619781.1| HIV-1 isolate C1.14D clone 14 from Sweden envelop... 38 1.1
67gb|AY619780.1| HIV-1 isolate C1.13D clone 13 from Sweden envelop... 38 1.1
68gb|AY619779.1| HIV-1 isolate C1.11bD clone 11 from Sweden envelo... 38 1.1
69gb|AY619778.1| HIV-1 isolate C1.11aD clone 11 from Sweden envelo... 38 1.1
70gb|AY619777.1| HIV-1 isolate M3.R5.pi clone 3 from Sweden envelo... 38 1.1
71gb|AY619774.1| HIV-1 isolate M3.43D clone 43 from Sweden envelop... 38 1.1
72gb|AY619772.1| HIV-1 isolate M3.5D clone 5 from Sweden envelope ... 38 1.1
73gb|AY619771.1| HIV-1 isolate M3.3D clone 3 from Sweden envelope ... 38 1.1
74gb|AY619769.1| HIV-1 isolate M3.23D clone 23 from Sweden envelop... 38 1.1
75gb|AY619768.1| HIV-1 isolate M3.30D clone 30 from Sweden envelop... 38 1.1
76gb|AY619766.1| HIV-1 isolate M4.X4.ci clone 4 from Sweden envelo... 38 1.1
77gb|AY619763.1| HIV-1 isolate M1.X4.pi clone 1 from Sweden envelo... 38 1.1
78gb|AY619761.1| HIV-1 isolate M2.16D clone 16 from Sweden envelop... 38 1.1
79gb|AY619760.1| HIV-1 isolate M2.43D clone 43 from Sweden envelop... 38 1.1
80gb|AY619759.1| HIV-1 isolate M2.7D clone 7 from Sweden envelope ... 38 1.1
81gb|AY619758.1| HIV-1 isolate M2.50D clone 50 from Sweden envelop... 38 1.1
82gb|AY619757.1| HIV-1 isolate M2.6D clone 6 from Sweden envelope ... 38 1.1
83gb|AY619756.1| HIV-1 isolate M2.47D clone 47 from Sweden envelop... 38 1.1
84gb|AY619755.1| HIV-1 isolate M2.38D clone 38 from Sweden envelop... 38 1.1
85gb|AY619754.1| HIV-1 isolate M2.37D clone 37 from Sweden envelop... 38 1.1
86gb|AY619752.1| HIV-1 isolate M2.3D clone 3 from Sweden envelope ... 38 1.1
87gb|AY619749.1| HIV-1 isolate M2.21D clone 21 from Sweden envelop... 38 1.1
88gb|AY619748.1| HIV-1 isolate M2.2D clone 2 from Sweden envelope ... 38 1.1
89gb|AY619746.1| HIV-1 isolate M1.48D clone 48 from Sweden envelop... 38 1.1
90gb|AY619745.1| HIV-1 isolate M1.5D clone 5 from Sweden envelope ... 38 1.1
91gb|AY619740.1| HIV-1 isolate M1.32D clone 32 from Sweden envelop... 38 1.1
92gb|AY619739.1| HIV-1 isolate M1.31D clone 31 from Sweden envelop... 38 1.1
93gb|AY619736.1| HIV-1 isolate M1.25D clone 25 from Sweden envelop... 38 1.1
94gb|AY619735.1| HIV-1 isolate M1.21D clone 21 from Sweden envelop... 38 1.1
95gb|AY619732.1| HIV-1 isolate M2.1D clone 1 from Sweden envelope ... 38 1.1
96gb|AY619731.1| HIV-1 isolate M1.2bD clone 2 from Sweden envelope... 38 1.1
97gb|AY619730.1| HIV-1 isolate M1.2aD clone 2 from Sweden envelope... 38 1.1
98gb|U56330.1|HIV1U56330 Human immunodeficiency virus type 1 clone... 38 1.1
99gb|U56312.1|HIV1U56312 Human immunodeficiency virus type 1 clone... 38 1.1
100gb|U56311.1|HIV1U56311 Human immunodeficiency virus type 1 clone... 38 1.1
101gb|U56310.1|HIV1U56310 Human immunodeficiency virus type 1 clone... 38 1.1
102gb|U56306.1|HIV1U56306 Human immunodeficiency virus type 1 clone... 38 1.1
103gb|U56305.1|HIV1U56305 Human immunodeficiency virus type 1, clon... 38 1.1
104gb|U56376.1|HIVU56376 Human immunodeficiency virus type 1 envelo... 38 1.1
105gb|L22947.1|HIV1UG266A Human immunodeficiency virus type 1 (UG26... 38 1.1
106gb|M98897.1|HIV3070E Human immunodeficiency virus type 1 (Uganda... 38 1.1
107gb|M98895.1|HIV3070B Human immunodeficiency virus type 1 (Uganda... 38 1.1
108gb|AF016341.1| HIV-1 strain UG95308 from Uganda envelope glycopr... 36 4.4
109gb|AF016333.1| HIV-1 strain UG95035 from Uganda envelope glycopr... 36 4.4
110gb|AY669754.1| HIV-1 isolate 92UG001 from Uganda envelope glycop... 36 4.4
111gb|AY669752.1| HIV-1 isolate 94UG114 from Uganda envelope glycop... 36 4.4
112gb|AC149669.2| Bos taurus BAC CH240-57J21 (Children's Hospital ... 36 4.4
113gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, com... 36 4.4
114gb|DQ027803.1| HIV-1 isolate QB609_101M_B14 from Kenya envelope ... 36 4.4
115gb|AY932265.1| HIV-1 isolate TZBDE308-4-11 from Tanzania envelop... 36 4.4
116gb|AY932264.1| HIV-1 isolate TZBDE308-4-8 from Tanzania envelope... 36 4.4
117gb|AY932263.1| HIV-1 isolate TZBDE308-4-7 from Tanzania envelope... 36 4.4
118gb|AY932262.1| HIV-1 isolate TZBDE308-4-6 from Tanzania envelope... 36 4.4
119gb|AY932261.1| HIV-1 isolate TZBDE308-4-5 from Tanzania envelope... 36 4.4
120gb|AY932231.1| HIV-1 isolate TZPRE679 from Tanzania nonfunctiona... 36 4.4
121gb|AY931714.1| HIV-1 isolate TZMDE663-2-9 from Tanzania envelope... 36 4.4
122gb|AY931713.1| HIV-1 isolate TZMDE663-2-8 from Tanzania envelope... 36 4.4
123gb|AY931712.1| HIV-1 isolate TZMDE663-2-6 from Tanzania envelope... 36 4.4
124gb|AY931711.1| HIV-1 isolate TZMDE663-2-5 from Tanzania envelope... 36 4.4
125gb|AY931710.1| HIV-1 isolate TZMDE663-2-4 from Tanzania envelope... 36 4.4
126gb|AY931709.1| HIV-1 isolate TZMDE663-2-3 from Tanzania envelope... 36 4.4
127gb|AY931708.1| HIV-1 isolate TZMDE663-2-2 from Tanzania envelope... 36 4.4
128gb|AY931707.1| HIV-1 isolate TZMDE663-2-12 from Tanzania envelop... 36 4.4
129gb|AY931706.1| HIV-1 isolate TZMDE663-2-11 from Tanzania envelop... 36 4.4
130gb|AY931705.1| HIV-1 isolate TZMDE663-2-10 from Tanzania envelop... 36 4.4
131gb|AY931704.1| HIV-1 isolate TZMDE663-2-1 from Tanzania envelope... 36 4.4
132emb|AJ320484.1|HIM320484 Human immunodeficiency virus type 1 com... 36 4.4
133gb|L35458.1|HIV1092AED HIV-1 isolate D1BU009W.01092aED env (env)... 36 4.4
134gb|L35457.1|HIV1062AED HIV-1 isolate D1BU009W.01062aED env (env)... 36 4.4
135gb|L35456.1|HIV1042AED HIV-1 isolate D1BU009W.01042aED env (env)... 36 4.4
136gb|L35454.1|HIV1022AED HIV-1 isolate D1BU009W.01022aED env (env)... 36 4.4
137gb|L35453.1|HIV1012AED HIV-1 isolate D1BU009W.01012aED env (env)... 36 4.4
138gb|L35452.1|HIV1DI2ACD HIV-1 isolate D1BU009W.01di2aCD env (env)... 36 4.4
139gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, comple... 36 4.4
140gb|AF404025.1| HIV-1 isolate 435 from Netherlands envelope glyco... 36 4.4
141gb|AF403943.1| HIV-1 isolate 247 from Netherlands envelope glyco... 36 4.4
142gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromoso... 36 4.4
143gb|DQ387781.1| HIV-1 isolate TI2-P5 from Puerto Rico envelope gl... 36 4.4
144gb|AF283157.1|AF283157 HIV-1 isolate TZB0162 from Tanzania, enve... 36 4.4
145gb|AF283111.1|AF283111 HIV-1 isolate TZB0116 from Tanzania, enve... 36 4.4
146gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromoso... 36 4.4
147gb|AF364118.1|AF364118 HIV-1 isolate spleen S100 clone 1 from Ke... 36 4.4
148gb|AF038100.1|AF038100 HIV-1 isolate TZB0050 from Tanzania, gp12... 36 4.4
149gb|AY619775.1| HIV-1 isolate M3.26D clone 26 from Sweden envelop... 36 4.4
150gb|AY619773.1| HIV-1 isolate M3.7D clone 7 from Sweden envelope ... 36 4.4
151gb|AY619770.1| HIV-1 isolate M3.28D clone 28 from Sweden envelop... 36 4.4
152gb|AY619767.1| HIV-1 isolate M4.X4.pi clone 4 from Sweden envelo... 36 4.4
153gb|AY619764.1| HIV-1 isolate M2.X4.ci clone 2 from Sweden envelo... 36 4.4
154gb|AY619762.1| HIV-1 isolate M1.X4.ci clone 1 from Sweden envelo... 36 4.4
155gb|AY619753.1| HIV-1 isolate M2.31D clone 31 from Sweden envelop... 36 4.4
156gb|AY619750.1| HIV-1 isolate M2.28D clone 28 from Sweden envelop... 36 4.4
157gb|AY619747.1| HIV-1 isolate M1.8D clone 8 from Sweden envelope ... 36 4.4
158gb|AY619744.1| HIV-1 isolate M1.41D clone 41 from Sweden envelop... 36 4.4
159gb|AY619743.1| HIV-1 isolate M1.3bD clone 3 from Sweden nonfunct... 36 4.4
160gb|AY619742.1| HIV-1 isolate M1.3aD clone 3 from Sweden envelope... 36 4.4
161gb|AY619741.1| HIV-1 isolate M1.34D clone 34 from Sweden envelop... 36 4.4
162gb|AY619738.1| HIV-1 isolate M1.30D clone 30 from Sweden envelop... 36 4.4
163gb|AY619737.1| HIV-1 isolate M1.29D clone 29 from Sweden envelop... 36 4.4
164gb|AY619734.1| HIV-1 isolate M1.19D clone 19 from Sweden envelop... 36 4.4
165gb|AY619733.1| HIV-1 isolate M1.11D clone 11 from Sweden envelop... 36 4.4
166gb|U76146.1|HIVU76146 HIV-1 strain SE8384 from Uganda, envelope ... 36 4.4
167gb|AY123861.1| Human immunodeficiency virus 1 isolate TZMoE47115... 36 4.4
168gb|AF188912.1|AF188912 HIV-1 isolate mother NT4 from Uganda, env... 36 4.4
169gb|AF188905.1|AF188905 HIV-1 isolate mother T7 from Uganda, enve... 36 4.4
170gb|AY146223.1| HIV-1 isolate 144eMa88 from Malawi envelope glyco... 36 4.4
171gb|AY146222.1| HIV-1 isolate 119eMa88 from Malawi envelope glyco... 36 4.4
172dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 36 4.4
173gb|AF086686.1|AF086686 HIV-1 clone B5.10 from Uganda, envelope g... 36 4.4
174gb|AF086685.1|AF086685 HIV-1 clone B5.9 from Uganda, envelope gl... 36 4.4
175gb|AF086684.1|AF086684 HIV-1 clone B5.8 from Uganda, envelope gl... 36 4.4
176gb|AF086683.1|AF086683 HIV-1 clone B5.7 from Uganda, envelope gl... 36 4.4
177gb|AF086682.1|AF086682 HIV-1 clone B5.6 from Uganda, envelope gl... 36 4.4
178gb|AF086681.1|AF086681 HIV-1 clone B5.5 from Uganda, envelope gl... 36 4.4
179gb|AF086680.1|AF086680 HIV-1 clone B5.4 from Uganda, envelope gl... 36 4.4
180gb|AF086679.1|AF086679 HIV-1 clone B5.3 from Uganda, envelope gl... 36 4.4
181gb|AF086678.1|AF086678 HIV-1 clone B5.2 from Uganda, envelope gl... 36 4.4
182gb|AF086677.1|AF086677 HIV-1 clone B5.1 from Uganda, envelope gl... 36 4.4
183gb|AF086666.1|AF086666 HIV-1 clone B3.10 from Uganda, envelope g... 36 4.4
184gb|AF086665.1|AF086665 HIV-1 clone B3.9 from Uganda, envelope gl... 36 4.4
185gb|AF086664.1|AF086664 HIV-1 clone B3.8 from Uganda, envelope gl... 36 4.4
186gb|AF086663.1|AF086663 HIV-1 clone B3.7 from Uganda, envelope gl... 36 4.4
187gb|AF086662.1|AF086662 HIV-1 clone B3.6 from Uganda, envelope gl... 36 4.4
188gb|AF086660.1|AF086660 HIV-1 clone B3.4 from Uganda, envelope gl... 36 4.4
189gb|AF086659.1|AF086659 HIV-1 clone B3.3 from Uganda, envelope gl... 36 4.4
190gb|AF086658.1|AF086658 HIV-1 clone B3.2 from Uganda, envelope gl... 36 4.4
191gb|AF086657.1|AF086657 HIV-1 clone B3.1 from Uganda, envelope gl... 36 4.4
192gb|AF086656.1|AF086656 HIV-1 clone B2.10 from Uganda, envelope g... 36 4.4
193gb|AF086655.1|AF086655 HIV-1 clone B2.9 from Uganda, envelope gl... 36 4.4
194gb|AF086654.1|AF086654 HIV-1 clone B2.8 from Uganda, envelope gl... 36 4.4
195gb|AF086653.1|AF086653 HIV-1 clone B2.7 from Uganda, envelope gl... 36 4.4
196gb|AF086652.1|AF086652 HIV-1 clone B2.6 from Uganda, envelope gl... 36 4.4
197gb|AF086651.1|AF086651 HIV-1 clone B2.5 from Uganda, envelope gl... 36 4.4
198gb|AF086650.1|AF086650 HIV-1 clone B2.4 from Uganda, envelope gl... 36 4.4
199gb|AF086648.1|AF086648 HIV-1 clone B2.2 from Uganda, envelope gl... 36 4.4
200gb|AF086647.1|AF086647 HIV-1 clone B2.1 from Uganda, envelope gl... 36 4.4
201dbj|AB097484.1| Human immunodeficiency virus 1 proviral c2v3 gen... 36 4.4
202gb|AF484504.1| HIV-1 isolate 98UG57130 from Uganda, partial genome 36 4.4
203gb|AF484483.1| HIV-1 isolate 99UGB32394 from Uganda, partial genome 36 4.4
204emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in... 36 4.4
205gb|AF086780.1|AF086780 HIV-1 clone Ib20 from Uganda, envelope gl... 36 4.4
206gb|AF086779.1|AF086779 HIV-1 clone Ib19 from Uganda, envelope gl... 36 4.4
207gb|AF086778.1|AF086778 HIV-1 clone Ib18 from Uganda, envelope gl... 36 4.4
208gb|AF086777.1|AF086777 HIV-1 clone Ib17 from Uganda, envelope gl... 36 4.4
209gb|AF086776.1|AF086776 HIV-1 clone Ib16 from Uganda, envelope gl... 36 4.4
210gb|AF086775.1|AF086775 HIV-1 clone Ib15 from Uganda, envelope gl... 36 4.4
211gb|AF086773.1|AF086773 HIV-1 clone Ib13 from Uganda, envelope gl... 36 4.4
212gb|AF086772.1|AF086772 HIV-1 clone Ib12 from Uganda, envelope gl... 36 4.4
213gb|AF086771.1|AF086771 HIV-1 clone Ib11 from Uganda, envelope gl... 36 4.4
214gb|AF082123.1|AF082123 HIV-1 from Uganda clone I10 envelope glyc... 36 4.4
215gb|AF082122.1|AF082122 HIV-1 from Uganda clone I9 envelope glyco... 36 4.4
216gb|AF082121.1|AF082121 HIV-1 from Uganda clone I8 envelope glyco... 36 4.4
217gb|AF082120.1|AF082120 HIV-1 from Uganda clone I7 envelope glyco... 36 4.4
218gb|AY494966.1| HIV-1 isolate C2-94UG114 from Uganda envelope gly... 36 4.4
219gb|AY494965.1| HIV-1 isolate C2-92UG001 from Uganda envelope gly... 36 4.4
220gb|U88824.1|U88824 HIV-1 isolate 94UG114 from Uganda complete ge... 36 4.4
221gb|U36887.1|HIV1U36887 Human immunodeficiency virus type 1 envel... 36 4.4
222gb|U36886.1|HIV1U36886 Human immunodeficiency virus type 1 envel... 36 4.4
223gb|U36884.1|HIV1U36884 Human immunodeficiency virus type 1 envel... 36 4.4
224gb|AF074069.1|AF074069 HIV-1 clone 5.5 from Uganda, gp120 (env) ... 36 4.4
225gb|AF074068.1|AF074068 HIV-1 clone 5.4 from Uganda, gp120 (env) ... 36 4.4
226gb|AF074067.1|AF074067 HIV-1 clone 5.3 from Uganda, gp120 (env) ... 36 4.4
227gb|AF074066.1|AF074066 HIV-1 clone 5.2 from Uganda, gp120 (env) ... 36 4.4
228gb|AF074065.1|AF074065 HIV-1 clone 5.1 from Uganda, gp120 (env) ... 36 4.4
229gb|AF074064.1|AF074064 HIV-1 clone 4.5 from Uganda, gp120 (env) ... 36 4.4
230gb|AF074063.1|AF074063 HIV-1 clone 4.4 from Uganda, gp120 (env) ... 36 4.4
231gb|AF074062.1|AF074062 HIV-1 clone 4.3 from Uganda, gp120 (env) ... 36 4.4
232gb|AF074061.1|AF074061 HIV-1 clone 4.2 from Uganda, gp120 (env) ... 36 4.4
233gb|AF074060.1|AF074060 HIV-1 clone 4.1 from Uganda, gp120 (env) ... 36 4.4
234gb|U69992.1|HIVU69992 HIV-1 strain CMR105 from Cameroon, envelop... 36 4.4
235gb|U76127.1|HIVU76127 HIV-1 strain SE7386 from Uganda, envelope ... 36 4.4
236gb|U39254.1|HIV1U39254 Human immunodeficiency virus type 1 isola... 36 4.4
237gb|L01334.1|HIVTAN73X Human immunodeficiency virus type 1 (TAN7-... 36 4.4
238gb|L01333.1|HIVTAN72X Human immunodeficiency virus type 1 (TAN7-... 36 4.4
239gb|L01332.1|HIVTAN71X Human immunodeficiency virus type 1 (TAN7-... 36 4.4
240gb|L01328.1|HIVTAN53X Human immunodeficiency virus type 1 (TAN5-... 36 4.4
241gb|L01327.1|HIVTAN52X Human immunodeficiency virus type 1 (TAN5-... 36 4.4
242gb|L01326.1|HIVTAN51X Human immunodeficiency virus type 1 (TAN5-... 36 4.4
243gb|U12986.1|HIV1U12986 Human immunodeficiency virus type 1, isol... 36 4.4
244gb|U12414.1|HIV1U12414 Human immunodeficiency virus type 1 isola... 36 4.4
245gb|U12409.1|HIV1U12409 Human immunodeficiency virus type 1 isola... 36 4.4
246gb|U12407.1|HIV1U12407 Human immunodeficiency virus type 1 isola... 36 4.4
247gb|U16524.1|HIVI04D Human immunodeficiency virus type 1 patient ... 36 4.4
248gb|M98971.1|HIV3121B Human immunodeficiency virus type 1 (Uganda... 36 4.4
249gb|M98970.1|HIV3121A Human immunodeficiency virus type 1 (Uganda... 36 4.4
250gb|M98969.1|HIV3120C Human immunodeficiency virus type 1 (Uganda... 36 4.4
251gb|M98934.1|HIV3110B Human immunodeficiency virus type 1 (Uganda... 36 4.4
252gb|M98933.1|HIV3110A Human immunodeficiency virus type 1 (Uganda... 36 4.4
253gb|M98907.1|HIV3074D Human immunodeficiency virus type 1 (Uganda... 36 4.4
254gb|M98901.1|HIV3070D Human immunodeficiency virus type 1 (Uganda... 36 4.4
255gb|M98896.1|HIV3070C Human immunodeficiency virus type 1 (Uganda... 36 4.4
256gb|M98894.1|HIV3070A Human immunodeficiency virus type 1 (Uganda... 36 4.4
257gb|U08786.1|HIV1U08786 Human immunodeficiency virus type 1, samp... 36 4.4
258gb|U08721.1|HIV1U08721 Human immunodeficiency virus type 1, samp... 36 4.4

>gb|AC153728.1| Mus musculus  BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 226417

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaagttttattccatcctt 31
             ||||||||||||||||||||
Sbjct: 66088 aaaagttttattccatcctt 66069



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>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaagttttattccatcctt 31
             ||||||||||||||||||||
Sbjct: 17015 aaaagttttattccatcctt 16996



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>gb|AF038110.1|AF038110 HIV-1 isolate TZB0060 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 664

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 207 aaagttttattccatccttt 188



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>gb|AY619849.1| HIV-1 isolate C4.8D clone 8 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 260 aaagttttattccatccttt 241



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>gb|AY619846.1| HIV-1 isolate C4.53D clone 53 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 260 aaagttttattccatccttt 241



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>gb|AY619844.1| HIV-1 isolate C4.51D clone 51 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619840.1| HIV-1 isolate C4.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 260 aaagttttattccatccttt 241



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>gb|AY619834.1| HIV-1 isolate C4.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619825.1| HIV-1 isolate C4.12bD clone 12 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619824.1| HIV-1 isolate C4.12aD clone 12 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619821.1| HIV-1 isolate C4.1D clone 1 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 260 aaagttttattccatccttt 241



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>gb|AY619808.1| HIV-1 isolate C2.6D clone 6 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619807.1| HIV-1 isolate C2.51D clone 51 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 257 aaagttttattccatccttt 238



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>gb|AY619776.1| HIV-1 isolate M3.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 260 aaagttttattccatccttt 241



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>gb|AF201804.1|AF201804 HIV-1 clone H35-10 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201803.1|AF201803 HIV-1 clone H35-9 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201802.1|AF201802 HIV-1 clone H35-8 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201800.1|AF201800 HIV-1 clone H35-6 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201799.1|AF201799 HIV-1 clone H35-5 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201798.1|AF201798 HIV-1 clone H35-4 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201797.1|AF201797 HIV-1 clone H35-3 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201796.1|AF201796 HIV-1 clone H35-2 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AF201795.1|AF201795 HIV-1 clone H35-1 from Uganda, envelope glycoprotein, C2-C4 region
           (env) gene, partial cds
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 317 aaagttttattccatccttt 298



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>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     aaaagttttattccatcctt 31
              ||||||||||||||||||||
Sbjct: 220791 aaaagttttattccatcctt 220810



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>gb|U16042.1|HIV1U16042 Human immunodeficiency virus type 1 clone XSH141L17 envelope
           glycoprotein (env) mRNA, V1-V5 regions, partial cds
          Length = 1075

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  aaagttttattccatccttt 32
           ||||||||||||||||||||
Sbjct: 680 aaagttttattccatccttt 661



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>gb|DQ410403.1| HIV-1 isolate H26v1e14.2 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1013 aaagttttattccatcctt 995



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>gb|DQ410402.1| HIV-1 isolate H26v1e3.1 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1013 aaagttttattccatcctt 995



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>gb|DQ410394.1| HIV-1 isolate H26v2ed11 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1013 aaagttttattccatcctt 995



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>gb|DQ410389.1| HIV-1 isolate H26v2ed12 from USA envelope glycoprotein (env) gene,
            complete cds
          Length = 2547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1013 aaagttttattccatcctt 995



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>gb|DQ410388.1| HIV-1 isolate H26v2ed10 from USA nonfunctional envelope glycoprotein
            (env) gene, complete sequence
          Length = 2547

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1013 aaagttttattccatcctt 995



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>gb|AY352657.1| HIV-1 isolate UG266 from Uganda, complete genome
          Length = 8986

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 6607 aaagttttattccatcctt 6589



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>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    gttttattccatcctttgg 34
             |||||||||||||||||||
Sbjct: 53740 gttttattccatcctttgg 53758



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>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence
          Length = 148259

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    ttattccatcctttggatc 37
             |||||||||||||||||||
Sbjct: 90017 ttattccatcctttggatc 90035



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>gb|AF350904.1| Partula affinis haplotype A1 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 685

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 170 aaagttttattccatcctt 188



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>gb|AY619852.1| HIV-1 isolate C4.16bD clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619845.1| HIV-1 isolate C4.52D clone 52 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619839.1| HIV-1 isolate C4.42D clone 42 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619837.1| HIV-1 isolate C4.35D clone 35 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619835.1| HIV-1 isolate C4.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619833.1| HIV-1 isolate C4.29D clone 29 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619831.1| HIV-1 isolate C4.27D clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619828.1| HIV-1 isolate C4.19D clone 19 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619826.1| HIV-1 isolate C4.16aD clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619817.1| HIV-1 isolate C1.R5.pi1 clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619812.1| HIV-1 isolate C1.R5.pi2 clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619809.1| HIV-1 isolate C2.9D clone 9 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619800.1| HIV-1 isolate C2.30bD clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619799.1| HIV-1 isolate C2.30aD clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619798.1| HIV-1 isolate C2.29D clone 29 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619797.1| HIV-1 isolate C2.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 257 aaagttttattccatcctt 239



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>gb|AY619796.1| HIV-1 isolate C1.7D clone 7 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619795.1| HIV-1 isolate C1.53D clone 53 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619794.1| HIV-1 isolate C1.50D clone 50 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 356

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619793.1| HIV-1 isolate C1.47D clone 47 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619792.1| HIV-1 isolate C1.46D clone 46 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619791.1| HIV-1 isolate C1.40D clone 40 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619790.1| HIV-1 isolate C1.4D clone 4 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619789.1| HIV-1 isolate C1.38D clone 38 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619788.1| HIV-1 isolate C1.32D clone 32 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619787.1| HIV-1 isolate C1.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619786.1| HIV-1 isolate C1.30D clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619785.1| HIV-1 isolate C1.28D clone 28 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619784.1| HIV-1 isolate C1.27bD clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619783.1| HIV-1 isolate C1.27aD clone 27 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619782.1| HIV-1 isolate C1.19D clone 19 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619781.1| HIV-1 isolate C1.14D clone 14 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619780.1| HIV-1 isolate C1.13D clone 13 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619779.1| HIV-1 isolate C1.11bD clone 11 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619778.1| HIV-1 isolate C1.11aD clone 11 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619777.1| HIV-1 isolate M3.R5.pi clone 3 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619774.1| HIV-1 isolate M3.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619772.1| HIV-1 isolate M3.5D clone 5 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619771.1| HIV-1 isolate M3.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619769.1| HIV-1 isolate M3.23D clone 23 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619768.1| HIV-1 isolate M3.30D clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619766.1| HIV-1 isolate M4.X4.ci clone 4 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619763.1| HIV-1 isolate M1.X4.pi clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619761.1| HIV-1 isolate M2.16D clone 16 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619760.1| HIV-1 isolate M2.43D clone 43 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619759.1| HIV-1 isolate M2.7D clone 7 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619758.1| HIV-1 isolate M2.50D clone 50 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619757.1| HIV-1 isolate M2.6D clone 6 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619756.1| HIV-1 isolate M2.47D clone 47 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619755.1| HIV-1 isolate M2.38D clone 38 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619754.1| HIV-1 isolate M2.37D clone 37 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619752.1| HIV-1 isolate M2.3D clone 3 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619749.1| HIV-1 isolate M2.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619748.1| HIV-1 isolate M2.2D clone 2 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619746.1| HIV-1 isolate M1.48D clone 48 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619745.1| HIV-1 isolate M1.5D clone 5 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619740.1| HIV-1 isolate M1.32D clone 32 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619739.1| HIV-1 isolate M1.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619736.1| HIV-1 isolate M1.25D clone 25 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619735.1| HIV-1 isolate M1.21D clone 21 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619732.1| HIV-1 isolate M2.1D clone 1 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619731.1| HIV-1 isolate M1.2bD clone 2 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|AY619730.1| HIV-1 isolate M1.2aD clone 2 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 260 aaagttttattccatcctt 242



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>gb|U56330.1|HIV1U56330 Human immunodeficiency virus type 1 clone 3B envelope glycoprotein,
           C2-V5 region (env) gene, partial cds
          Length = 618

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 218 aaagttttattccatcctt 200



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>gb|U56312.1|HIV1U56312 Human immunodeficiency virus type 1 clone 3MP44 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 636

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 242 aaagttttattccatcctt 224



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>gb|U56311.1|HIV1U56311 Human immunodeficiency virus type 1 clone 3MP43 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 242 aaagttttattccatcctt 224



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>gb|U56310.1|HIV1U56310 Human immunodeficiency virus type 1 clone 3MP41 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 242 aaagttttattccatcctt 224



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>gb|U56306.1|HIV1U56306 Human immunodeficiency virus type 1 clone 3MP45 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 242 aaagttttattccatcctt 224



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>gb|U56305.1|HIV1U56305 Human immunodeficiency virus type 1, clone 3MP42 envelope
           glycoprotein, C2-V5 region (env) gene, partial cds
          Length = 642

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 242 aaagttttattccatcctt 224



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>gb|U56376.1|HIVU56376 Human immunodeficiency virus type 1 envelope glycoprotein gp120 V3
           region (env) gene, partial cds
          Length = 243

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 173 aaagttttattccatcctt 155



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>gb|L22947.1|HIV1UG266A Human immunodeficiency virus type 1 (UG266) proviral DNA encoding
            env, tat, vpu, rev, and nef genes
          Length = 3026

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   aaagttttattccatcctt 31
            |||||||||||||||||||
Sbjct: 1187 aaagttttattccatcctt 1169



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>gb|M98897.1|HIV3070E Human immunodeficiency virus type 1 (Uganda 3070e/1990), partial
           env cds, V3 loop
          Length = 198

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 171 aaagttttattccatcctt 153



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>gb|M98895.1|HIV3070B Human immunodeficiency virus type 1 (Uganda 3070b/1990), partial
           env cds, V3 loop
          Length = 224

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 13  aaagttttattccatcctt 31
           |||||||||||||||||||
Sbjct: 206 aaagttttattccatcctt 188



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>gb|AF016341.1| HIV-1 strain UG95308 from Uganda envelope glycoprotein (env) gene,
           partial cds
          Length = 339

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 194 aaagttttattccatcct 177



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>gb|AF016333.1| HIV-1 strain UG95035 from Uganda envelope glycoprotein (env) gene,
           partial cds
          Length = 342

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 194 aaagttttattccatcct 177



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>gb|AY669754.1| HIV-1 isolate 92UG001 from Uganda envelope glycoprotein (env) gene,
            partial cds
          Length = 2574

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1031 aaagttttattccatcct 1014



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>gb|AY669752.1| HIV-1 isolate 94UG114 from Uganda envelope glycoprotein (env) gene,
           partial cds
          Length = 2526

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 989 aaagttttattccatcct 972



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>gb|AC149669.2| Bos taurus  BAC CH240-57J21 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 227069

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 21   attccatcctttggatcc 38
            ||||||||||||||||||
Sbjct: 1334 attccatcctttggatcc 1351



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>gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, complete sequence
          Length = 169596

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    attccatcctttggatcc 38
             ||||||||||||||||||
Sbjct: 57123 attccatcctttggatcc 57106



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>gb|DQ027803.1| HIV-1 isolate QB609_101M_B14 from Kenya envelope glycoprotein (env)
           gene, partial cds
          Length = 1042

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 648 aaagttttattccatcct 631



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>gb|AY932265.1| HIV-1 isolate TZBDE308-4-11 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 621

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY932264.1| HIV-1 isolate TZBDE308-4-8 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 621

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY932263.1| HIV-1 isolate TZBDE308-4-7 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 621

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY932262.1| HIV-1 isolate TZBDE308-4-6 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 621

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY932261.1| HIV-1 isolate TZBDE308-4-5 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 621

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY932231.1| HIV-1 isolate TZPRE679 from Tanzania nonfunctional envelope
           glycoprotein (env) gene, partial sequence
          Length = 589

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 209 aaagttttattccatcct 192



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>gb|AY931714.1| HIV-1 isolate TZMDE663-2-9 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931713.1| HIV-1 isolate TZMDE663-2-8 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931712.1| HIV-1 isolate TZMDE663-2-6 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931711.1| HIV-1 isolate TZMDE663-2-5 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931710.1| HIV-1 isolate TZMDE663-2-4 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931709.1| HIV-1 isolate TZMDE663-2-3 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931708.1| HIV-1 isolate TZMDE663-2-2 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931707.1| HIV-1 isolate TZMDE663-2-12 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 644

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931706.1| HIV-1 isolate TZMDE663-2-11 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931705.1| HIV-1 isolate TZMDE663-2-10 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AY931704.1| HIV-1 isolate TZMDE663-2-1 from Tanzania envelope glycoprotein
           (env) gene, partial cds
          Length = 645

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>emb|AJ320484.1|HIM320484 Human immunodeficiency virus type 1 complete proviral genome, strain
            92UG001
          Length = 9745

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 7281 aaagttttattccatcct 7264



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>gb|L35458.1|HIV1092AED HIV-1 isolate D1BU009W.01092aED env (env) gene, partial cds
          Length = 1461

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|L35457.1|HIV1062AED HIV-1 isolate D1BU009W.01062aED env (env) gene, partial cds
          Length = 1458

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|L35456.1|HIV1042AED HIV-1 isolate D1BU009W.01042aED env (env) gene, partial cds
          Length = 1458

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|L35454.1|HIV1022AED HIV-1 isolate D1BU009W.01022aED env (env) gene, partial cds
          Length = 1449

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1004 aaagttttattccatcct 987



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>gb|L35453.1|HIV1012AED HIV-1 isolate D1BU009W.01012aED env (env) gene, partial cds
          Length = 1458

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|L35452.1|HIV1DI2ACD HIV-1 isolate D1BU009W.01di2aCD env (env) gene, partial cds
          Length = 1458

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence
          Length = 144324

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    gaaaagttttattccatc 28
             ||||||||||||||||||
Sbjct: 54210 gaaaagttttattccatc 54227



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>gb|AF404025.1| HIV-1 isolate 435 from Netherlands envelope glycoprotein (env)
           gene, partial cds
          Length = 264

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF403943.1| HIV-1 isolate 247 from Netherlands envelope glycoprotein (env)
           gene, partial cds
          Length = 261

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 212 aaagttttattccatcct 195



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>gb|AC182460.2| Gallus gallus BAC clone CH261-132N3 from chromosome ul, complete sequence
          Length = 212965

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttttattccatcctttgg 34
              ||||||||||||||||||
Sbjct: 189183 ttttattccatcctttgg 189166



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>gb|DQ387781.1| HIV-1 isolate TI2-P5 from Puerto Rico envelope glycoprotein (env)
           gene, partial cds
          Length = 485

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 221 aaagttttattccatcct 204



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>gb|AF283157.1|AF283157 HIV-1 isolate TZB0162 from Tanzania, envelope glycoprotein, C2-C4
           region (env) gene, partial cds
          Length = 669

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 209 aaagttttattccatcct 192



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>gb|AF283111.1|AF283111 HIV-1 isolate TZB0116 from Tanzania, envelope glycoprotein, C2-C4
           region (env) gene, partial cds
          Length = 660

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AC177806.2| Gallus gallus BAC clone CH261-13L12 from chromosome ul, complete sequence
          Length = 250495

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ttttattccatcctttgg 34
              ||||||||||||||||||
Sbjct: 118404 ttttattccatcctttgg 118387



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>gb|AF364118.1|AF364118 HIV-1 isolate spleen S100 clone 1 from Kenya envelope glycoprotein
           gene, partial cds
          Length = 1188

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 686 aaagttttattccatcct 669



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>gb|AF038100.1|AF038100 HIV-1 isolate TZB0050 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 649

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 207 aaagttttattccatcct 190



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>gb|AY619775.1| HIV-1 isolate M3.26D clone 26 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619773.1| HIV-1 isolate M3.7D clone 7 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619770.1| HIV-1 isolate M3.28D clone 28 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619767.1| HIV-1 isolate M4.X4.pi clone 4 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619764.1| HIV-1 isolate M2.X4.ci clone 2 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619762.1| HIV-1 isolate M1.X4.ci clone 1 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619753.1| HIV-1 isolate M2.31D clone 31 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619750.1| HIV-1 isolate M2.28D clone 28 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619747.1| HIV-1 isolate M1.8D clone 8 from Sweden envelope glycoprotein (env)
           gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619744.1| HIV-1 isolate M1.41D clone 41 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619743.1| HIV-1 isolate M1.3bD clone 3 from Sweden nonfunctional envelope
           glycoprotein (env) gene, partial sequence
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619742.1| HIV-1 isolate M1.3aD clone 3 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619741.1| HIV-1 isolate M1.34D clone 34 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619738.1| HIV-1 isolate M1.30D clone 30 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619737.1| HIV-1 isolate M1.29D clone 29 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619734.1| HIV-1 isolate M1.19D clone 19 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|AY619733.1| HIV-1 isolate M1.11D clone 11 from Sweden envelope glycoprotein
           (env) gene, partial cds
          Length = 357

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 260 aaagttttattccatcct 243



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>gb|U76146.1|HIVU76146 HIV-1 strain SE8384 from Uganda, envelope glycoprotein V3 region
           (env) pseudogene, partial cds
          Length = 254

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 211 aaagttttattccatcct 194



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>gb|AY123861.1| Human immunodeficiency virus 1 isolate TZMoE47115 from Tanzania
           envelope glycoprotein (env) gene, partial cds
          Length = 660

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 206 aaagttttattccatcct 189



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>gb|AF188912.1|AF188912 HIV-1 isolate mother NT4 from Uganda, envelope, glycoprotein (env)
           gene, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF188905.1|AF188905 HIV-1 isolate mother T7 from Uganda, envelope, glycoprotein (env)
           gene, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AY146223.1| HIV-1 isolate 144eMa88 from Malawi envelope glycoprotein (env)
           gene, partial cds
          Length = 456

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 380 aaagttttattccatcct 363



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>gb|AY146222.1| HIV-1 isolate 119eMa88 from Malawi envelope glycoprotein (env)
           gene, partial cds
          Length = 456

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 380 aaagttttattccatcct 363



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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 13      aaagttttattccatcct 30
               ||||||||||||||||||
Sbjct: 1337178 aaagttttattccatcct 1337161



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>gb|AF086686.1|AF086686 HIV-1 clone B5.10 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086685.1|AF086685 HIV-1 clone B5.9 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086684.1|AF086684 HIV-1 clone B5.8 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086683.1|AF086683 HIV-1 clone B5.7 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086682.1|AF086682 HIV-1 clone B5.6 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086681.1|AF086681 HIV-1 clone B5.5 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086680.1|AF086680 HIV-1 clone B5.4 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086679.1|AF086679 HIV-1 clone B5.3 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086678.1|AF086678 HIV-1 clone B5.2 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086677.1|AF086677 HIV-1 clone B5.1 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086666.1|AF086666 HIV-1 clone B3.10 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086665.1|AF086665 HIV-1 clone B3.9 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086664.1|AF086664 HIV-1 clone B3.8 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086663.1|AF086663 HIV-1 clone B3.7 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086662.1|AF086662 HIV-1 clone B3.6 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086660.1|AF086660 HIV-1 clone B3.4 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086659.1|AF086659 HIV-1 clone B3.3 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086658.1|AF086658 HIV-1 clone B3.2 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086657.1|AF086657 HIV-1 clone B3.1 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086656.1|AF086656 HIV-1 clone B2.10 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086655.1|AF086655 HIV-1 clone B2.9 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086654.1|AF086654 HIV-1 clone B2.8 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086653.1|AF086653 HIV-1 clone B2.7 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086652.1|AF086652 HIV-1 clone B2.6 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086651.1|AF086651 HIV-1 clone B2.5 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086650.1|AF086650 HIV-1 clone B2.4 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086648.1|AF086648 HIV-1 clone B2.2 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086647.1|AF086647 HIV-1 clone B2.1 from Uganda, envelope glycoprotein gp120, V3
           region (env) mRNA, partial cds
          Length = 271

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>dbj|AB097484.1| Human immunodeficiency virus 1 proviral c2v3 gene for envelope
           glycoprotein, partial cds, strain:Uz11-Hetero
          Length = 308

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 224 aaagttttattccatcct 207



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>gb|AF484504.1| HIV-1 isolate 98UG57130 from Uganda, partial genome
          Length = 8827

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 6459 aaagttttattccatcct 6442



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>gb|AF484483.1| HIV-1 isolate 99UGB32394 from Uganda, partial genome
          Length = 8750

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 6431 aaagttttattccatcct 6414



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>emb|CR385063.6| Zebrafish DNA sequence from clone CH211-250G4 in linkage group 19,
             complete sequence
          Length = 72609

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 3     acacaaacgaaaagttttattc 24
             ||||||| ||||||||||||||
Sbjct: 10134 acacaaaggaaaagttttattc 10155



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>gb|AF086780.1|AF086780 HIV-1 clone Ib20 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086779.1|AF086779 HIV-1 clone Ib19 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086778.1|AF086778 HIV-1 clone Ib18 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086777.1|AF086777 HIV-1 clone Ib17 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086776.1|AF086776 HIV-1 clone Ib16 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086775.1|AF086775 HIV-1 clone Ib15 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086773.1|AF086773 HIV-1 clone Ib13 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086772.1|AF086772 HIV-1 clone Ib12 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF086771.1|AF086771 HIV-1 clone Ib11 from Uganda, envelope glycoprotein, V3 region
           (env) gene, partial cds
          Length = 245

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF082123.1|AF082123 HIV-1 from Uganda clone I10 envelope glycoprotein (env) gene,
           partial cds
          Length = 280

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF082122.1|AF082122 HIV-1 from Uganda clone I9 envelope glycoprotein (env) gene,
           partial cds
          Length = 280

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF082121.1|AF082121 HIV-1 from Uganda clone I8 envelope glycoprotein (env) gene,
           partial cds
          Length = 280

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AF082120.1|AF082120 HIV-1 from Uganda clone I7 envelope glycoprotein (env) gene,
           partial cds
          Length = 280

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|AY494966.1| HIV-1 isolate C2-94UG114 from Uganda envelope glycoprotein (env)
           gene, complete cds
          Length = 2529

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 989 aaagttttattccatcct 972



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>gb|AY494965.1| HIV-1 isolate C2-92UG001 from Uganda envelope glycoprotein (env)
            gene, complete cds
          Length = 2580

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1034 aaagttttattccatcct 1017



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>gb|U88824.1|U88824 HIV-1 isolate 94UG114 from Uganda complete genome
          Length = 8952

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 6573 aaagttttattccatcct 6556



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>gb|U36887.1|HIV1U36887 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene,
            complete cds
          Length = 2583

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1052 aaagttttattccatcct 1035



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>gb|U36886.1|HIV1U36886 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene,
            complete cds
          Length = 2583

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1052 aaagttttattccatcct 1035



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>gb|U36884.1|HIV1U36884 Human immunodeficiency virus type 1 envelope glycoprotein (env) gene,
            complete cds
          Length = 2583

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1052 aaagttttattccatcct 1035



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>gb|AF074069.1|AF074069 HIV-1 clone 5.5 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074068.1|AF074068 HIV-1 clone 5.4 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074067.1|AF074067 HIV-1 clone 5.3 from Uganda, gp120 (env) gene, partial cds
          Length = 194

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074066.1|AF074066 HIV-1 clone 5.2 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074065.1|AF074065 HIV-1 clone 5.1 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074064.1|AF074064 HIV-1 clone 4.5 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074063.1|AF074063 HIV-1 clone 4.4 from Uganda, gp120 (env) gene, partial cds
          Length = 192

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074062.1|AF074062 HIV-1 clone 4.3 from Uganda, gp120 (env) gene, partial cds
          Length = 193

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074061.1|AF074061 HIV-1 clone 4.2 from Uganda, gp120 (env) gene, partial cds
          Length = 192

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|AF074060.1|AF074060 HIV-1 clone 4.1 from Uganda, gp120 (env) gene, partial cds
          Length = 192

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 173 aaagttttattccatcct 156



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>gb|U69992.1|HIVU69992 HIV-1 strain CMR105 from Cameroon, envelope glycoprotein (env),
           C2V3C3 region, partial cds
          Length = 384

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 227 aaagttttattccatcct 210



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>gb|U76127.1|HIVU76127 HIV-1 strain SE7386 from Uganda, envelope glycoprotein V3 region
           (env) gene, partial cds
          Length = 255

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 209 aaagttttattccatcct 192



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>gb|U39254.1|HIV1U39254 Human immunodeficiency virus type 1 isolate BU/91/09, envelope
            glycoprotein (env) gene, complete cds
          Length = 2532

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1013 aaagttttattccatcct 996



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>gb|L01334.1|HIVTAN73X Human immunodeficiency virus type 1 (TAN7-3) V3 neutralizing domain
          Length = 275

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 214 aaagttttattccatcct 197



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>gb|L01333.1|HIVTAN72X Human immunodeficiency virus type 1 (TAN7-2) V3 neutralizing domain
          Length = 275

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 214 aaagttttattccatcct 197



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>gb|L01332.1|HIVTAN71X Human immunodeficiency virus type 1 (TAN7-1) V3 neutralizing domain
          Length = 276

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 215 aaagttttattccatcct 198



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>gb|L01328.1|HIVTAN53X Human immunodeficiency virus type 1 (TAN5-3) V3 neutralizing domain
          Length = 275

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 214 aaagttttattccatcct 197



to top

>gb|L01327.1|HIVTAN52X Human immunodeficiency virus type 1 (TAN5-2) V3 neutralizing domain
          Length = 275

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 214 aaagttttattccatcct 197



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>gb|L01326.1|HIVTAN51X Human immunodeficiency virus type 1 (TAN5-1) V3 neutralizing domain
          Length = 275

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 214 aaagttttattccatcct 197



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>gb|U12986.1|HIV1U12986 Human immunodeficiency virus type 1, isolate K966 from Kenya,
           envelope glycoprotein (env) gene v3 region, partial cds
          Length = 252

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 218 aaagttttattccatcct 201



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>gb|U12414.1|HIV1U12414 Human immunodeficiency virus type 1 isolate TZ080 from Tanzania,
           envelope glycoprotein (env) gene, V1-V3 region, partial
           cds
          Length = 408

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 293 aaagttttattccatcct 276



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>gb|U12409.1|HIV1U12409 Human immunodeficiency virus type 1 isolate TZ017 from Tanzania, vpu
            protein (vpu) pseudogene, complete cds, and envelope
            glycoprotein (env) gene, V1-V3 region, partial cds
          Length = 1379

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1264 aaagttttattccatcct 1247



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>gb|U12407.1|HIV1U12407 Human immunodeficiency virus type 1 isolate TZ012 from Tanzania, vpu
            protein (vpu) gene, complete cds, and envelope
            glycoprotein (env) gene, V1-V3 region, partial cds
          Length = 1372

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   aaagttttattccatcct 30
            ||||||||||||||||||
Sbjct: 1261 aaagttttattccatcct 1244



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>gb|U16524.1|HIVI04D Human immunodeficiency virus type 1 patient I04, clone D, envelope
           glycoprotein (env) gene, V3 region, partial cds
          Length = 288

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 227 aaagttttattccatcct 210



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>gb|M98971.1|HIV3121B Human immunodeficiency virus type 1 (Uganda 3121b/1990), partial
           env cds, V3 loop
          Length = 269

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 207 aaagttttattccatcct 190



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>gb|M98970.1|HIV3121A Human immunodeficiency virus type 1 (Uganda 3121a/1990), partial
           env cds, V3 loop
          Length = 250

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 221 aaagttttattccatcct 204



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>gb|M98969.1|HIV3120C Human immunodeficiency virus type 1 (Uganda 3120c/1990), partial
           env cds, V3 loop
          Length = 277

 Score = 36.2 bits (18), Expect = 4.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 13  aaagttttattccatcct 30
           ||||||||||||||||||
Sbjct: 237 aaagttttattccatcct 220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 410,715
Number of Sequences: 3902068
Number of extensions: 410715
Number of successful extensions: 112027
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111711
Number of HSP's gapped (non-prelim): 316
length of query: 40
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 20
effective length of database: 17,155,003,908
effective search space: 343100078160
effective search space used: 343100078160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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