Clone Information

BLAST Search Result

Clone Name	rbart34h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK069899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	280	4e-72
2	dbj\|AK065017.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	280	4e-72
3	dbj\|AK062045.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	280	4e-72
4	ref\|NM_191983.1\| Oryza sativa (japonica cultivar-group), predic...	274	3e-70
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
6	dbj\|AP003264.3\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
7	dbj\|AP003223.3\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
8	gb\|AY107250.1\| Zea mays PCO068082 mRNA sequence	129	9e-27
9	ref\|NM_191297.1\| Oryza sativa (japonica cultivar-group), predic...	76	1e-10
10	dbj\|AB110177.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	76	1e-10
11	dbj\|AP003375.2\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
12	dbj\|AK105474.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	1e-10
13	dbj\|AK102585.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	1e-10
14	dbj\|AK058626.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	1e-10
15	gb\|BT018813.1\| Zea mays clone EL01N0530F04.d mRNA sequence	50	0.007
16	gb\|AY104519.1\| Zea mays PCO113699 mRNA sequence	46	0.11
17	gb\|CP000078.1\| Leishmania major strain Friedlin chromosome 2, co...	44	0.42
18	gb\|BT013896.1\| Lycopersicon esculentum clone 132892R, mRNA sequence	44	0.42
19	gb\|BC087973.1\| Xenopus tropicalis 1-acylglycerol-3-phosphate O-a...	44	0.42
20	ref\|NM_001011265.1\| Xenopus tropicalis 1-acylglycerol-3-phosphat...	44	0.42
21	gb\|AC132452.3\| Mus musculus BAC clone RP23-195K10 from chromosom...	42	1.7
22	gb\|AC104133.5\| Homo sapiens BAC clone RP11-451N23 from 7, comple...	42	1.7
23	gb\|AC112990.7\| Mus musculus chromosome 19, clone RP24-317E20, co...	42	1.7
24	emb\|AL713960.17\| Mouse DNA sequence from clone RP23-448I9 on chr...	42	1.7
25	emb\|AL592551.10\| Mouse DNA sequence from clone RP23-12I13 on chr...	42	1.7
26	emb\|AL592185.35\| Mouse DNA sequence from clone RP23-341J22 on ch...	42	1.7
27	gb\|AC090142.3\| Homo sapiens chromosome 8, clone RP11-200A13, com...	42	1.7
28	gb\|AC021498.12\| Homo sapiens chromosome 8, clone RP11-127H5, com...	42	1.7
29	dbj\|AP004386.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	42	1.7
30	gb\|L29074.1\|HUMFMR1S Homo sapiens fragile X mental retardation s...	40	6.5
31	gb\|AC121808.2\| Mus musculus BAC clone RP23-449M23 from 13, compl...	40	6.5
32	ref\|NM_138844.1\| Rattus norvegicus unc-13 homolog D (C. elegans)...	40	6.5
33	emb\|AL157834.12\| Human DNA sequence from clone RP11-310E22 on ch...	40	6.5
34	emb\|AL596125.27\| Mouse DNA sequence from clone RP23-5O23 on chro...	40	6.5
35	emb\|AL645950.13\| Mouse DNA sequence from clone RP23-13C17 on chr...	40	6.5
36	gb\|AC114276.2\| Homo sapiens chromosome 5 clone CTC-388B19, compl...	40	6.5
37	gb\|AC113165.1\| Homo sapiens chromosome 5 clone RP11-213E1, compl...	40	6.5
38	gb\|AC104119.2\| Homo sapiens chromosome 5 clone RP11-34D23, compl...	40	6.5
39	gb\|AC008588.8\| Homo sapiens chromosome 5 clone CTC-573M9, comple...	40	6.5
40	gb\|AC023511.17\| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Ca...	40	6.5
41	emb\|BX322540.5\| Zebrafish DNA sequence from clone CH211-247B3 in...	40	6.5
42	gb\|AF547983.1\| Schizosaccharomyces japonicus mitochondrial DNA, ...	40	6.5
43	gb\|AC128709.6\| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cance...	40	6.5
44	gb\|AC120024.22\| Homo sapiens chromosome 17, clone CTD-2526A2, co...	40	6.5
45	gb\|AF159356.1\|AF159356 Rattus norvegicus Munc13-4 protein (Munc1...	40	6.5
46	gb\|AC140397.2\| Mus musculus BAC clone RP23-162E7 from chromosome...	40	6.5
47	emb\|AL713898.9\| Mouse DNA sequence from clone RP23-253D13 on chr...	40	6.5
48	dbj\|AP003778.3\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	6.5

>dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full
            insert sequence
          Length = 1676

 Score =  280 bits (141), Expect = 4e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                        
Query: 177  cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
            |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 1364 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 1305

                                                                        
Query: 237  gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
             ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 1304 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 1245

                                                                        
Query: 297  gccaacttcaggcaactcatcctctgggatttcttcttgtctgccttctagaactgccat 356
             ||||||||||||||||||||||| || | ||||||||| || ||||| ||||| | |||
Sbjct: 1244 accaacttcaggcaactcatcctcaggcacttcttcttgccttccttcaagaaccgacat 1185

                                                                        
Query: 357  taaccgtctaagtggttgcattgctgcctccttacaaacaaggcgtatatcagagccgga 416
            ||||| |||||| ||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct: 1184 taaccttctaaggggttgcattgccgcctccttgcacacaaggcgtatatcagagcctga 1125

                                                             
Query: 417  atatccttcggtgttctccacaagagcatcatatggaatctccattgtg 465
            ||||||||| || |||||||||||| |||||||||| || | |||||||
Sbjct: 1124 atatccttcagttttctccacaagaacatcatatgggatattcattgtg 1076

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>dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F15, full
            insert sequence
          Length = 1627

 Score =  280 bits (141), Expect = 4e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                        
Query: 177  cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
            |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 1333 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 1274

                                                                        
Query: 237  gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
             ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 1273 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 1214

                                                                        
Query: 297  gccaacttcaggcaactcatcctctgggatttcttcttgtctgccttctagaactgccat 356
             ||||||||||||||||||||||| || | ||||||||| || ||||| ||||| | |||
Sbjct: 1213 accaacttcaggcaactcatcctcaggcacttcttcttgccttccttcaagaaccgacat 1154

                                                                        
Query: 357  taaccgtctaagtggttgcattgctgcctccttacaaacaaggcgtatatcagagccgga 416
            ||||| |||||| ||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct: 1153 taaccttctaaggggttgcattgccgcctccttgcacacaaggcgtatatcagagcctga 1094

                                                             
Query: 417  atatccttcggtgttctccacaagagcatcatatggaatctccattgtg 465
            ||||||||| || |||||||||||| |||||||||| || | |||||||
Sbjct: 1093 atatccttcagttttctccacaagaacatcatatgggatattcattgtg 1045

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>dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A09, full
           insert sequence
          Length = 837

 Score =  280 bits (141), Expect = 4e-72
 Identities = 252/289 (87%)
 Strand = Plus / Minus

                                                                       
Query: 177 cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
           |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 541 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 482

                                                                       
Query: 237 gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
            ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 481 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 422

                                                                       
Query: 297 gccaacttcaggcaactcatcctctgggatttcttcttgtctgccttctagaactgccat 356
            ||||||||||||||||||||||| || | ||||||||| || ||||| ||||| | |||
Sbjct: 421 accaacttcaggcaactcatcctcaggcacttcttcttgccttccttcaagaaccggcat 362

                                                                       
Query: 357 taaccgtctaagtggttgcattgctgcctccttacaaacaaggcgtatatcagagccgga 416
           ||||| |||||| ||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct: 361 taaccttctaaggggttgcattgccgcctccttgcacacaaggcgtatatcagagcctga 302

                                                            
Query: 417 atatccttcggtgttctccacaagagcatcatatggaatctccattgtg 465
           ||||||||| || |||||||||||| |||||||||| || | |||||||
Sbjct: 301 atatccttcagttttctccacaagaacatcatatgggatattcattgtg 253

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>ref|NM_191983.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score =  274 bits (138), Expect = 3e-70
 Identities = 249/286 (87%)
 Strand = Plus / Minus

                                                                        
Query: 180  ttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatggag 239
            ||||||||||||||| |||||||| ||||||||||| || || ||||||||| |||| ||
Sbjct: 1236 ttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaag 1177

                                                                        
Query: 240  atgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggcc 299
            ||||||||| |||||||||||||| || ||||| || || || ||||||| || ||| ||
Sbjct: 1176 atgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggacc 1117

                                                                        
Query: 300  aacttcaggcaactcatcctctgggatttcttcttgtctgccttctagaactgccattaa 359
            ||||||||||||||||||||| || | ||||||||| || ||||| ||||| | ||||||
Sbjct: 1116 aacttcaggcaactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaa 1057

                                                                        
Query: 360  ccgtctaagtggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaata 419
            || |||||| ||||||||||| |||||||| || |||||||||||||||||||| |||||
Sbjct: 1056 ccttctaaggggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaata 997

                                                          
Query: 420  tccttcggtgttctccacaagagcatcatatggaatctccattgtg 465
            |||||| || |||||||||||| |||||||||| || | |||||||
Sbjct: 996  tccttcagttttctccacaagaacatcatatgggatattcattgtg 951

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 6e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                            
Query: 314      catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 373
                ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 27654270 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 27654329

                                                                            
Query: 374      gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 433
                ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 27654330 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 27654389

                                                
Query: 434      ccacaagagcatcatatggaatctccattgtg 465
                |||||||| |||||||||| || | |||||||
Sbjct: 27654390 ccacaagaacatcatatgggatattcattgtg 27654421



 Score =  139 bits (70), Expect = 9e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 177      cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
                |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 27653588 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 27653647

                                                                            
Query: 237      gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
                 ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 27653648 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 27653707

                                  
Query: 297      gccaacttcaggcaactc 314
                 |||||||||||||||||
Sbjct: 27653708 accaacttcaggcaactc 27653725



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                            
Query: 193      tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
                ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 31804275 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 31804216

                                          
Query: 253      cgtgtattcctcagagcaagttcgat 278
                | ||| ||||||| ||||| ||||||
Sbjct: 31804215 cttgtgttcctcaaagcaacttcgat 31804190

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>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485G01
          Length = 167203

 Score =  143 bits (72), Expect = 6e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                         
Query: 314   catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 373
             ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 62836 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 62895

                                                                         
Query: 374   gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 433
             ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 62896 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 62955

                                             
Query: 434   ccacaagagcatcatatggaatctccattgtg 465
             |||||||| |||||||||| || | |||||||
Sbjct: 62956 ccacaagaacatcatatgggatattcattgtg 62987



 Score =  139 bits (70), Expect = 9e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                         
Query: 177   cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
             |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 62154 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 62213

                                                                         
Query: 237   gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
              ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 62214 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 62273

                               
Query: 297   gccaacttcaggcaactc 314
              |||||||||||||||||
Sbjct: 62274 accaacttcaggcaactc 62291

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>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0007F06
          Length = 150817

 Score =  143 bits (72), Expect = 6e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 314    catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 373
              ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 121564 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 121623

                                                                          
Query: 374    gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 433
              ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 121624 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 121683

                                              
Query: 434    ccacaagagcatcatatggaatctccattgtg 465
              |||||||| |||||||||| || | |||||||
Sbjct: 121684 ccacaagaacatcatatgggatattcattgtg 121715



 Score =  139 bits (70), Expect = 9e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                          
Query: 177    cctttagctgaggacatggctgccataatcttgattgaacttctcatatctatgtgcatg 236
              |||||||||||||||||| |||||||| ||||||||||| || || ||||||||| ||||
Sbjct: 120882 cctttagctgaggacatgactgccatagtcttgattgaatttttcgtatctatgtacatg 120941

                                                                          
Query: 237    gagatgagcagacggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgg 296
               ||||||||||| |||||||||||||| || ||||| || || || ||||||| || |||
Sbjct: 120942 aagatgagcagatggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactgg 121001

                                
Query: 297    gccaacttcaggcaactc 314
               |||||||||||||||||
Sbjct: 121002 accaacttcaggcaactc 121019

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>gb|AY107250.1| Zea mays PCO068082 mRNA sequence
          Length = 1198

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                        
Query: 337  ctgccttctagaactgccattaaccgtctaagtggttgcattgctgcctccttacaaaca 396
            |||||||| ||||||||||||| |||||| || || ||||||||||| ||||| || || 
Sbjct: 1194 ctgccttcaagaactgccattacccgtcttaggggctgcattgctgcttccttgcatacc 1135

                                                                        
Query: 397  aggcgtatatcagagccggaatatccttcggtgttctccacaagagcatcatatggaatc 456
            ||||| ||||||||||| ||||| ||||| || |||||||||||| ||||||| ||||||
Sbjct: 1134 aggcgaatatcagagccagaatacccttcagttttctccacaagaacatcatagggaatc 1075

                     
Query: 457  tccattgtg 465
            |||||||||
Sbjct: 1074 tccattgtg 1066

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>ref|NM_191297.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1287

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 193  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1262 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1203

                                      
Query: 253  cgtgtattcctcagagcaagttcgat 278
            | ||| ||||||| ||||| ||||||
Sbjct: 1202 cttgtgttcctcaaagcaacttcgat 1177

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>dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for katanin, complete
            cds, clone: 13YPG038
          Length = 1375

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 193  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1213 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1154

                                      
Query: 253  cgtgtattcctcagagcaagttcgat 278
            | ||| ||||||| ||||| ||||||
Sbjct: 1153 cttgtgttcctcaaagcaacttcgat 1128

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>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                         
Query: 193   tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
             ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 82313 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 82254

                                       
Query: 253   cgtgtattcctcagagcaagttcgat 278
             | ||| ||||||| ||||| ||||||
Sbjct: 82253 cttgtgttcctcaaagcaacttcgat 82228

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>dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A04, full
            insert sequence
          Length = 2096

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 193  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1250 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1191

                                      
Query: 253  cgtgtattcctcagagcaagttcgat 278
            | ||| ||||||| ||||| ||||||
Sbjct: 1190 cttgtgttcctcaaagcaacttcgat 1165

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>dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098E22, full
            insert sequence
          Length = 1635

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 193  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1473 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1414

                                      
Query: 253  cgtgtattcctcagagcaagttcgat 278
            | ||| ||||||| ||||| ||||||
Sbjct: 1413 cttgtgttcctcaaagcaacttcgat 1388

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>dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C03, full
            insert sequence
          Length = 1393

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 193  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 252
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1231 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1172

                                      
Query: 253  cgtgtattcctcagagcaagttcgat 278
            | ||| ||||||| ||||| ||||||
Sbjct: 1171 cttgtgttcctcaaagcaacttcgat 1146

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>gb|BT018813.1| Zea mays clone EL01N0530F04.d mRNA sequence
          Length = 1691

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 189  gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 248
            ||||||||| || || || || |||||||||||||| | ||| ||||||||||| || ||
Sbjct: 1230 gacatggctaccgtagtcctggttgaacttctcatagcgatgcgcatggagatgtgctga 1171

                 
Query: 249  cggcc 253
            |||||
Sbjct: 1170 cggcc 1166

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>gb|AY104519.1| Zea mays PCO113699 mRNA sequence
          Length = 1696

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 211  ttgaacttctcatatctatgtgcatggagatgagcagacggcc 253
            |||||||||||||| | ||| ||||||||||| || |||||||
Sbjct: 1467 ttgaacttctcatagcgatgcgcatggagatgtgctgacggcc 1425

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>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 326    tttcttcttgtctgccttctag 347
              ||||||||||||||||||||||
Sbjct: 230910 tttcttcttgtctgccttctag 230889

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>gb|BT013896.1| Lycopersicon esculentum clone 132892R, mRNA sequence
          Length = 1601

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 191  catggctgccataatcttgattgaacttctcatatctatgtgcatg 236
            |||||||||||||||||  ||||||||| || || ||| |||||||
Sbjct: 1230 catggctgccataatctgaattgaacttatcgtacctaggtgcatg 1185

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>gb|BC087973.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4
           (lysophosphatidic acid acyltransferase, delta), mRNA
           (cDNA clone MGC:107813 IMAGE:7021336), complete cds
          Length = 1607

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcatcctctgggatttcttct 333
           ||||||||||||||||||||||
Sbjct: 964 ctcatcctctgggatttcttct 943

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>ref|NM_001011265.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4
           (lysophosphatidic acid acyltransferase, delta) (agpat4),
           mRNA
          Length = 1607

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 ctcatcctctgggatttcttct 333
           ||||||||||||||||||||||
Sbjct: 964 ctcatcctctgggatttcttct 943

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>gb|AC132452.3| Mus musculus BAC clone RP23-195K10 from chromosome 19, complete sequence
          Length = 218688

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    gctgaggacatggctgccata 203
              |||||||||||||||||||||
Sbjct: 155750 gctgaggacatggctgccata 155770

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>gb|AC104133.5| Homo sapiens BAC clone RP11-451N23 from 7, complete sequence
          Length = 46877

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagctgaggacatggctgcc 200
            |||||||||||||||||||||
Sbjct: 4066 ttagctgaggacatggctgcc 4046

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>gb|AC112990.7| Mus musculus chromosome 19, clone RP24-317E20, complete sequence
          Length = 183322

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   gctgaggacatggctgccata 203
             |||||||||||||||||||||
Sbjct: 29452 gctgaggacatggctgccata 29472

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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5'
              end of the Car10 gene for carbonic anhydrase 10 and one CpG
              island, complete sequence
          Length = 203449

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    atcttgattgaacttctcata 224
              |||||||||||||||||||||
Sbjct: 158607 atcttgattgaacttctcata 158627

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>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete
              sequence
          Length = 215657

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     gagctggaaatacataaatga 117
              |||||||||||||||||||||
Sbjct: 214692 gagctggaaatacataaatga 214672

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>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a
              novel gene, the Nos2 gene for inducible macrophage nitric
              oxide synthase 2 and the 3' end of the Lgals9 gene for
              soluble galactose binding lectin 9, complete sequence
          Length = 178443

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     gagctggaaatacataaatga 117
              |||||||||||||||||||||
Sbjct: 177409 gagctggaaatacataaatga 177429

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>gb|AC090142.3| Homo sapiens chromosome 8, clone RP11-200A13, complete sequence
          Length = 197877

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     tacccaaagggcttattgctt 31
              |||||||||||||||||||||
Sbjct: 164491 tacccaaagggcttattgctt 164471

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>gb|AC021498.12| Homo sapiens chromosome 8, clone RP11-127H5, complete sequence
          Length = 160883

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     tacccaaagggcttattgctt 31
              |||||||||||||||||||||
Sbjct: 157925 tacccaaagggcttattgctt 157945

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>dbj|AP004386.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1154F4
          Length = 159598

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 11    tacccaaagggcttattgctt 31
             |||||||||||||||||||||
Sbjct: 16005 tacccaaagggcttattgctt 16025

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>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene,
              alternative splice products, complete cds; and  pseudogene,
              complete sequence
          Length = 185775

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    ttcttcttgtctgccttcta 346
              ||||||||||||||||||||
Sbjct: 124103 ttcttcttgtctgccttcta 124122

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>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ctatgtgcatggagatgagc 245
             ||||||||||||||||||||
Sbjct: 92851 ctatgtgcatggagatgagc 92870

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>ref|NM_138844.1| Rattus norvegicus unc-13 homolog D (C. elegans) (Unc13d), mRNA
          Length = 4018

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  tctgccttctagaactgcca 355
            ||||||||||||||||||||
Sbjct: 3726 tctgccttctagaactgcca 3745

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>emb|AL157834.12| Human DNA sequence from clone RP11-310E22 on chromosome 10 Contains two
             novel genes, a pseudogene similar to part of PRKC
             apoptosis WT1 regulator (PAWR), the gene for a novel
             AMP-binding enzyme, the 3' end of the PDLIM1 gene for PDZ
             and LIM domain 1 (elfin) and a CpG island, complete
             sequence
          Length = 190394

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aacatgctcctttagctgag 188
             ||||||||||||||||||||
Sbjct: 67459 aacatgctcctttagctgag 67440

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>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
              Chd3 gene for chromodomain helicase DNA binding protein 3,
              five novel genes, the 3' end of the gene for a novel
              protein similar to dynein and four CpG islands, complete
              sequence
          Length = 165212

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    ttgcattgctgcctccttac 391
              ||||||||||||||||||||
Sbjct: 153552 ttgcattgctgcctccttac 153533

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>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the
             Eef1b2 gene for eukaryotic translation elongation factor 1
             beta 2, the Ndufs1 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for
             G-protein coupled receptor 1, the 5' end of a novel gene,
             two novel genes and two CpG islands, complete sequence
          Length = 138564

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tcatcctctgggatttcttc 332
             ||||||||||||||||||||
Sbjct: 94531 tcatcctctgggatttcttc 94550

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>gb|AC114276.2| Homo sapiens chromosome 5 clone CTC-388B19, complete sequence
          Length = 127863

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   aacatgctcctttagctgag 188
             ||||||||||||||||||||
Sbjct: 97182 aacatgctcctttagctgag 97201

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>gb|AC113165.1| Homo sapiens chromosome 5 clone RP11-213E1, complete sequence
          Length = 140640

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aacatgctcctttagctgag 188
             ||||||||||||||||||||
Sbjct: 20063 aacatgctcctttagctgag 20044

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>gb|AC104119.2| Homo sapiens chromosome 5 clone RP11-34D23, complete sequence
          Length = 168108

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   aacatgctcctttagctgag 188
             ||||||||||||||||||||
Sbjct: 30589 aacatgctcctttagctgag 30608

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>gb|AC008588.8| Homo sapiens chromosome 5 clone CTC-573M9, complete sequence
          Length = 213167

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  aacatgctcctttagctgag 188
            ||||||||||||||||||||
Sbjct: 2579 aacatgctcctttagctgag 2598

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>gb|AC023511.17| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 175631

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tctatgtgcatggagatgag 244
             ||||||||||||||||||||
Sbjct: 22155 tctatgtgcatggagatgag 22136

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>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19,
              complete sequence
          Length = 156150

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    acgaacactacagggtgcaa 155
              ||||||||||||||||||||
Sbjct: 142644 acgaacactacagggtgcaa 142625

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>gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, complete genome
          Length = 80059

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aaatacataaatgataatta 123
             ||||||||||||||||||||
Sbjct: 24232 aaatacataaatgataatta 24213

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>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163031

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   agctgaggacatggctgccataat 205
             ||||||| ||||||||||||||||
Sbjct: 57075 agctgagcacatggctgccataat 57098

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>gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, complete sequence
          Length = 136002

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   tctgccttctagaactgcca 355
             ||||||||||||||||||||
Sbjct: 83686 tctgccttctagaactgcca 83705

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>gb|AF159356.1|AF159356 Rattus norvegicus Munc13-4 protein (Munc13-4) mRNA, complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  tctgccttctagaactgcca 355
            ||||||||||||||||||||
Sbjct: 3726 tctgccttctagaactgcca 3745

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>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    ctatgtgcatggagatgagc 245
              ||||||||||||||||||||
Sbjct: 148910 ctatgtgcatggagatgagc 148891

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>emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chromosome X, complete
             sequence
          Length = 189001

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   atacataaatgataattatg 125
             ||||||||||||||||||||
Sbjct: 99072 atacataaatgataattatg 99091

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>dbj|AP003778.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-384C21, complete
              sequences
          Length = 183146

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    tttcttcttgtctgccttct 345
              ||||||||||||||||||||
Sbjct: 124407 tttcttcttgtctgccttct 124388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,047,372
Number of Sequences: 3902068
Number of extensions: 4047372
Number of successful extensions: 77603
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77440
Number of HSP's gapped (non-prelim): 163
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result