>gb|AC103796.3| Homo sapiens chromosome 11, clone RP11-1033A18, complete sequence
          Length = 211799

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 488    gagcagggagctttatataccaa 510
              |||||||||||||||||||||||
Sbjct: 162373 gagcagggagctttatataccaa 162351

>gb|U31791.1|HPU31791 Human papillomavirus type 55, complete genome
          Length = 7822

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 445 ttctaaacaaatggcacaggct 466
           ||||||||||||||||||||||
Sbjct: 308 ttctaaacaaatggcacaggct 287

>gb|U31788.1|HPU31788 Human papillomavirus type 44, complete genome
          Length = 7833

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 445 ttctaaacaaatggcacaggct 466
           ||||||||||||||||||||||
Sbjct: 311 ttctaaacaaatggcacaggct 290

>emb|AL845364.4| Mouse DNA sequence from clone RP23-301M3 on chromosome 4, complete
             sequence
          Length = 205273

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 432   cattatcatagtcttctaaaca 453
             ||||||||||||||||||||||
Sbjct: 87264 cattatcatagtcttctaaaca 87285

>gb|M27023.1|PPH44E6A Human papillomavirus (HPV44) early protein (E6) gene, complete cds
          Length = 590

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 445 ttctaaacaaatggcacaggct 466
           ||||||||||||||||||||||
Sbjct: 309 ttctaaacaaatggcacaggct 288

>gb|AC105840.5| Rattus norvegicus 9 BAC CH230-42D23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 176349

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   tactccatcctcatgataaaatgt 164
             |||||||||||||| |||||||||
Sbjct: 34953 tactccatcctcattataaaatgt 34930

>gb|AC166990.3| Mus musculus BAC clone RP24-173K24 from chromosome 12, complete
             sequence
          Length = 144985

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   cattatcatagtcttctaaa 451
             ||||||||||||||||||||
Sbjct: 94203 cattatcatagtcttctaaa 94222

>emb|AL499609.9| Human DNA sequence from clone RP11-309N23 on chromosome 1, complete
             sequence
          Length = 136515

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   actttgtcagccagggatca 379
             ||||||||||||||||||||
Sbjct: 89671 actttgtcagccagggatca 89652

>emb|AL355809.11| Human DNA sequence from clone RP4-650K8 on chromosome 1 Contains part of
              the gene for a novel protein, complete sequence
          Length = 120340

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    cttctaaacaaatggcacag 463
              ||||||||||||||||||||
Sbjct: 101761 cttctaaacaaatggcacag 101780

>gb|AC112001.6| Rattus norvegicus 2 BAC CH230-54E3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 225052

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   tactccatcctcatgataaaatgt 164
             ||||||||| ||||||||||||||
Sbjct: 50559 tactccatcatcatgataaaatgt 50582

>emb|AL845335.13| Mouse DNA sequence from clone RP23-245N3 on chromosome 4, complete
            sequence
          Length = 122715

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 346  gcaaaatgtgccccactttg 365
            ||||||||||||||||||||
Sbjct: 8309 gcaaaatgtgccccactttg 8290

>emb|CR759941.1| Rat DNA sequence from clone RP32-551O16 on chromosome Y, complete
             sequence
          Length = 174940

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   tactccatcctcatgataaaatgt 164
             ||||||||| ||||||||||||||
Sbjct: 23835 tactccatcatcatgataaaatgt 23812

>gb|DP000058.1| Felis catus target 117 genomic scaffold
          Length = 458092

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   gggcccagtctcacaaaccg 133
             ||||||||||||||||||||
Sbjct: 41516 gggcccagtctcacaaaccg 41535

>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence
          Length = 185700

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   cttctaaacaaatggcacag 463
             ||||||||||||||||||||
Sbjct: 16238 cttctaaacaaatggcacag 16257

>gb|AC091135.9| Homo sapiens chromosome 18, clone RP11-289E15, complete sequence
          Length = 166207

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    acatattacacttcaattcaacaa 63
             |||||||||||||||||| |||||
Sbjct: 66367 acatattacacttcaattaaacaa 66390

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     gaccgccgcgccgccgagca 246
               ||||||||||||||||||||
Sbjct: 2576612 gaccgccgcgccgccgagca 2576593

>gb|AC159279.2| Mus musculus BAC clone RP23-342D8 from chromosome 12, complete sequence
          Length = 206464

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   cattatcatagtcttctaaa 451
             ||||||||||||||||||||
Sbjct: 10531 cattatcatagtcttctaaa 10550

>gb|AC154652.2| Mus musculus BAC clone RP24-261L18 from chromosome 17, complete
             sequence
          Length = 166922

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   ccccactttgtcagccaggg 375
             ||||||||||||||||||||
Sbjct: 44900 ccccactttgtcagccaggg 44919

>gb|AC158661.7| Mus musculus 6 BAC RP23-31E23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181763

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     attacaagatggcttccaca 42
              ||||||||||||||||||||
Sbjct: 146132 attacaagatggcttccaca 146151

>emb|BX569780.6| Zebrafish DNA sequence from clone CH211-134A17 in linkage group 10,
              complete sequence
          Length = 187807

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 452    caaatggcacaggcttcttc 471
              ||||||||||||||||||||
Sbjct: 118747 caaatggcacaggcttcttc 118766

>emb|CT033764.1| Medicago truncatula chromosome 5 clone mth2-62e18, COMPLETE SEQUENCE
          Length = 127491

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   aattcaacaattcatctcaa 73
            ||||||||||||||||||||
Sbjct: 3107 aattcaacaattcatctcaa 3126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,496,935
Number of Sequences: 3902068
Number of extensions: 4496935
Number of successful extensions: 80992
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80945
Number of HSP's gapped (non-prelim): 47
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)