Clone Name | rbart34h04 |
---|---|
Clone Library Name | barley_pub |
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 35.0 bits (79), Expect = 0.11 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = -1 Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419 +VA NVIP NW+P+ YRSIV + Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 33.5 bits (75), Expect = 0.31 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 490 TLVARNVIPKNWRPNTFYRSIVQY 419 T+VA NVIP NW+P Y+S V + Sbjct: 250 TVVASNVIPANWQPGAIYKSNVNF 273
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 32.7 bits (73), Expect = 0.53 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -1 Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419 ++A++VIP NWRP+ Y S VQ+ Sbjct: 246 VIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 32.3 bits (72), Expect = 0.70 Identities = 11/23 (47%), Positives = 18/23 (78%) Frame = -1 Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419 ++A+++IP NWRP+ Y S VQ+ Sbjct: 168 VIAKDIIPANWRPDAVYTSNVQF 190
>GIDA_XANCP (Q8PDG1) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +2 Query: 347 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 454 T++SCW+ +TE+ D R + + L G +EG+GP Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280
>GIDA_XANC8 (Q4UZP9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +2 Query: 347 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 454 T++SCW+ +TE+ D R + + L G +EG+GP Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 30.4 bits (67), Expect = 2.7 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419 LV +VIP NW+P+T Y S +Q+ Sbjct: 222 LVQDDVIPANWKPDTVYTSKLQF 244
>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC| 2.-.-.-) Length = 533 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 165 FRLCGCICRMQCQPSTNM*LHALYPFMKHDRIYVLLL 55 F LC CIC+ C P YP + R+Y+ L+ Sbjct: 75 FLLCRCICKSNCSP---------YPILLFTRLYMCLI 102
>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)| (Extracellular matrix protein 17) Length = 1442 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +2 Query: 326 LIKTPAKTELSCWLVGSTEEDDD*RWPSYLAVLDDG 433 L KT A E+ WL G E+DDD WPS DG Sbjct: 1013 LPKTTAYHEV--WLEGPEEQDDDPSWPSIFENRKDG 1046
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 29.6 bits (65), Expect = 4.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 95 YRACSYIFVEGWHCMRQMHPQSLKQSI 175 Y AC E W+CM+ +HP +L Q+I Sbjct: 631 YTACK----ENWNCMQCLHPHNLSQAI 653
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 28.9 bits (63), Expect = 7.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 490 TLVARNVIPKNWRPNTFYRSIVQYS 416 TL A +V+P+NW P Y S + +S Sbjct: 237 TLSATDVVPRNWAPKATYSSRLNFS 261
>CORO_CAEEL (Q21624) Coronin-like protein cor-1| Length = 605 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -3 Query: 488 ARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPPSNQPTSKRA 351 + RP Q P RPV D M IV+ R P ++P S RA Sbjct: 427 SERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRA 472
>RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like protein 1)| (pNd13/pNd14) Length = 885 Score = 25.0 bits (53), Expect(2) = 9.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 Query: 170 IVSDFADASAACNANPLRICNCMLC 96 I + F D + CNA R+C C C Sbjct: 82 IENQFNDLLSTCNAEIQRLCLCGFC 106 Score = 21.9 bits (45), Expect(2) = 9.2 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -1 Query: 379 RRTNQPARELCFGGSFNQSIN*FLWEIEEA 290 R NQ ++ LC GS+ Q+++ L +++A Sbjct: 13 REVNQFSQWLCVSGSYIQNLSENLASLQKA 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,505,182 Number of Sequences: 219361 Number of extensions: 1256803 Number of successful extensions: 2568 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2568 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)