ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 35 0.11
2EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 33 0.31
3EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 33 0.53
4EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 32 0.70
5GIDA_XANCP (Q8PDG1) tRNA uridine 5-carboxymethylaminomethyl modi... 31 2.0
6GIDA_XANC8 (Q4UZP9) tRNA uridine 5-carboxymethylaminomethyl modi... 31 2.0
7MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 30 2.7
8YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in ch... 30 3.5
9ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC ... 30 3.5
10ITB8_HUMAN (P26012) Integrin beta-8 precursor 30 4.5
11EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 29 7.7
12CORO_CAEEL (Q21624) Coronin-like protein cor-1 29 7.7
13RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like p... 25 9.2

>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1

Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419
           +VA NVIP NW+P+  YRSIV +
Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259



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>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 490 TLVARNVIPKNWRPNTFYRSIVQY 419
           T+VA NVIP NW+P   Y+S V +
Sbjct: 250 TVVASNVIPANWQPGAIYKSNVNF 273



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>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419
           ++A++VIP NWRP+  Y S VQ+
Sbjct: 246 VIAKDVIPANWRPDAVYTSNVQF 268



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419
           ++A+++IP NWRP+  Y S VQ+
Sbjct: 168 VIAKDIIPANWRPDAVYTSNVQF 190



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>GIDA_XANCP (Q8PDG1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 634

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 347 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 454
           T++SCW+  +TE+  D  R   + + L  G +EG+GP
Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280



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>GIDA_XANC8 (Q4UZP9) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 634

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 347 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 454
           T++SCW+  +TE+  D  R   + + L  G +EG+GP
Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 487 LVARNVIPKNWRPNTFYRSIVQY 419
           LV  +VIP NW+P+T Y S +Q+
Sbjct: 222 LVQDDVIPANWKPDTVYTSKLQF 244



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>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC|
           2.-.-.-)
          Length = 533

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 165 FRLCGCICRMQCQPSTNM*LHALYPFMKHDRIYVLLL 55
           F LC CIC+  C P         YP +   R+Y+ L+
Sbjct: 75  FLLCRCICKSNCSP---------YPILLFTRLYMCLI 102



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>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)|
            (Extracellular matrix protein 17)
          Length = 1442

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +2

Query: 326  LIKTPAKTELSCWLVGSTEEDDD*RWPSYLAVLDDG 433
            L KT A  E+  WL G  E+DDD  WPS      DG
Sbjct: 1013 LPKTTAYHEV--WLEGPEEQDDDPSWPSIFENRKDG 1046



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>ITB8_HUMAN (P26012) Integrin beta-8 precursor|
          Length = 769

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 95  YRACSYIFVEGWHCMRQMHPQSLKQSI 175
           Y AC     E W+CM+ +HP +L Q+I
Sbjct: 631 YTACK----ENWNCMQCLHPHNLSQAI 653



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>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 490 TLVARNVIPKNWRPNTFYRSIVQYS 416
           TL A +V+P+NW P   Y S + +S
Sbjct: 237 TLSATDVVPRNWAPKATYSSRLNFS 261



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>CORO_CAEEL (Q21624) Coronin-like protein cor-1|
          Length = 605

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 488 ARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPPSNQPTSKRA 351
           + RP    Q        P  RPV  D M IV+ R  P ++P S RA
Sbjct: 427 SERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRA 472



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>RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like protein 1)|
           (pNd13/pNd14)
          Length = 885

 Score = 25.0 bits (53), Expect(2) = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 170 IVSDFADASAACNANPLRICNCMLC 96
           I + F D  + CNA   R+C C  C
Sbjct: 82  IENQFNDLLSTCNAEIQRLCLCGFC 106



 Score = 21.9 bits (45), Expect(2) = 9.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 379 RRTNQPARELCFGGSFNQSIN*FLWEIEEA 290
           R  NQ ++ LC  GS+ Q+++  L  +++A
Sbjct: 13  REVNQFSQWLCVSGSYIQNLSENLASLQKA 42


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,505,182
Number of Sequences: 219361
Number of extensions: 1256803
Number of successful extensions: 2568
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2568
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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