ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPD_CAUCR (Q9A728) Anthranilate phosphoribosyltransferase (EC 2... 30 3.6
2ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disint... 30 3.6
3UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC ... 29 4.7
4SGO1_NEUCR (Q872U8) Shugoshin 29 4.7
5CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U... 29 6.2
6OS25_PLARE (P19455) 25 kDa ookinete surface antigen precursor (P... 28 8.1

>TRPD_CAUCR (Q9A728) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 341

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 411 PRPAQGAIASDAVRSWRAQGATAAD-AVCSRCAGRAIVPCTSTIDGLDV 268
           P PAQ A A  A+R    +G T  + A C+R   RA +P     D +DV
Sbjct: 35  PTPAQVAAAVTAIR---LRGETVGEIAACARAMRRAAIPLEHPYDVIDV 80



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>ATS17_HUMAN (Q8TE56) ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 17) (ADAM-TS
            17) (ADAM-TS17)
          Length = 1095

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 411  PRPA--QGAIASDAVRSWRAQGATAADAVCSRCAGRAIVPCTSTIDGLDVRTCPR 253
            PRPA  Q     D +  W A   +   A C +   +  V CT++    D  T PR
Sbjct: 908  PRPAAVQSCEGQDCLSIWEASEWSQCSASCGKGVWKRTVACTNSQGKCDASTRPR 962



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>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 6)
           (Ubiquitin-specific-processing protease 6)
           (Deubiquitinating enzyme 6) (Proto-oncogene TRE-2)
          Length = 1406

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 260 HVRTSSPSMVEVQGTMARPAHREQTASA-AVAPWARQERTASEAM-----APWAGRGRTA 421
           H+R S+  +   QG +  PA REQ + A    P +R  +T  +        P A   R  
Sbjct: 341 HLRASTKKLTRKQGDLPPPAKREQGSLAPRPVPASRGGKTLCKGYRQAPPGPPAQFQRPI 400

Query: 422 SAAVAPWAGR 451
            +A  PWA R
Sbjct: 401 CSASPPWASR 410



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>SGO1_NEUCR (Q872U8) Shugoshin|
          Length = 774

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 269 TSSPSM----VEVQGTMARPAHREQTASAAVAPWARQERTASEAMAPWAGRGRTASAAVA 436
           T++P+M    V+ Q T+  PA  E   +AAV    ++E + S    P  G+GR + +   
Sbjct: 587 TAAPAMTIPSVQEQSTLNLPAADETDENAAVEAQIQKELSNSITTRPRGGKGRQSMSRSV 646

Query: 437 P 439
           P
Sbjct: 647 P 647



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>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
           (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 373 PFLACPRCHCRRRRLFPVCRPC 308
           PF+AC  C       FPVCRPC
Sbjct: 54  PFVACNEC------AFPVCRPC 69



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>OS25_PLARE (P19455) 25 kDa ookinete surface antigen precursor (Prs25)|
          Length = 217

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
 Frame = -2

Query: 339 DAVCSR-----CAGRAIVPCTSTIDGLDVRTCPRPCMHDSRV**NCKDPTMHKPYGYFNL 175
           D VC +      +G     C + +  ++  TC    +        C + T++KP G F+ 
Sbjct: 27  DTVCKKGFLIQMSGHLECKCENDLVLVNEETCEEKVL-------KCDETTVNKPCGDFSK 79

Query: 174 IVFV*AAPVS-ACK*KSTHLFTCVVSFRLVRVVWMCVLYACTFMWC 40
            + +  +P+S ACK        C   + +V  V  C+L  C  + C
Sbjct: 80  CIKIDGSPISYACK--------CNPGYDMVNNV--CILNECKNVTC 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,271,915
Number of Sequences: 219361
Number of extensions: 1338172
Number of successful extensions: 3780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3772
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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