ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34h02 |
|---|---|
| Clone Library Name | barley_pub |
>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor| Length = 392 Score = 90.9 bits (224), Expect = 2e-18 Identities = 45/110 (40%), Positives = 61/110 (55%) Frame = -1 Query: 495 VEAPGTPALRGKFNVTAARRLSESPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEG 316 V P + K ++LS+ +V CH YP+AV+YCH + T YAV LE G Sbjct: 285 VAKKNAPMQKYKIAAAGVKKLSDDKSVV-CHKQKYPFAVFYCHKAMMTTVYAVPLEGENG 343 Query: 315 GTAPASMEALAVCHLDTTQWSPEHPFFALHSVKPGDVAVCHFLTKLSIVW 166 A +A+AVCH +T+ W+P H F + VKPG V VCHFL + +VW Sbjct: 344 MRA----KAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>JP650_ARATH (P92990) Probable polygalacturonase non-catalytic subunit JP650| precursor (Aromatic-rich glycoprotein JP650) Length = 626 Score = 70.1 bits (170), Expect = 3e-12 Identities = 34/103 (33%), Positives = 52/103 (50%) Frame = -1 Query: 465 GKFNVTAARRLSESPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEAL 286 GK N +L+++ V+CH YPY +YYCH+ Y L +E + + Sbjct: 528 GKVNGINGGKLTKA---VSCHQSLYPYLLYYCHSVPKVRVYEADL--LELNSKKKINHGI 582 Query: 285 AVCHLDTTQWSPEHPFFALHSVKPGDVAVCHFLTKLSIVWVRA 157 A+CH+DT+ W P H F KPG + VCH++ + + W A Sbjct: 583 AICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIA 625
>Y639_ARATH (O80760) Probable polygalacturonase non-catalytic subunit At1g60390| precursor (Aromatic-rich glycoprotein At1g60390) Length = 624 Score = 67.8 bits (164), Expect = 2e-11 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEAL----AVCHLDTTQWSPE 247 V+CH YPY +YYCH+ Y L P S+E + A+CH+DT+ WSP Sbjct: 540 VSCHQSLYPYLLYYCHSVPRVRVYETDLLD------PKSLEKINHGVAICHIDTSAWSPS 593 Query: 246 HPFFALHSVKPGDVAVCHFLTKLSIVW 166 H F PG + VCH++ + + W Sbjct: 594 HGAFLALGSGPGQIEVCHWIFENDMTW 620
>JP630_ARATH (P92982) Probable polygalacturonase non-catalytic subunit JP630| precursor (Aromatic-rich glycoprotein JP630) Length = 622 Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/103 (32%), Positives = 52/103 (50%) Frame = -1 Query: 465 GKFNVTAARRLSESPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEAL 286 GK N R+++S V+CH YPY +YYCH+ Y L ++ + + Sbjct: 524 GKVNGINGGRVTKS---VSCHQSLYPYLLYYCHSVPKVRVYESDL--LDPKSKAKINHGI 578 Query: 285 AVCHLDTTQWSPEHPFFALHSVKPGDVAVCHFLTKLSIVWVRA 157 A+CH+DT+ W H F L +PG + VCH++ + + W A Sbjct: 579 AICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWAIA 621
>GP1_LYCES (Q40161) Polygalacturonase-1 non-catalytic beta subunit precursor| (AroGP1) (Polygalacturonase converter) (PG converter) Length = 630 Score = 66.2 bits (160), Expect = 4e-11 Identities = 27/86 (31%), Positives = 43/86 (50%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V+CH YPY +YYCH+ Y + ++ + +A+CH+DT+ W P H F Sbjct: 546 VSCHQTLYPYLLYYCHSVPKVRVYEADI--LDPNSKVKINHGVAICHVDTSSWGPSHGAF 603 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWVRA 157 PG + VCH++ + + W A Sbjct: 604 VALGSGPGKIEVCHWIFENDMTWAIA 629
>GP3_LYCES (P93218) Polygalacturonase non-catalytic subunit AroGP3 precursor| Length = 632 Score = 63.9 bits (154), Expect = 2e-10 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V+CH YP +YYCH+ Y + ++ + +A+CH+DT+ W P H F Sbjct: 548 VSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWGPRHGAF 605 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWVRA 157 PG + VCH++ + + W A Sbjct: 606 VALGSGPGKIEVCHWIFENDMTWATA 631
>GP2_LYCES (P93217) Polygalacturonase non-catalytic subunit AroGP2 precursor| Length = 629 Score = 63.5 bits (153), Expect = 3e-10 Identities = 26/86 (30%), Positives = 42/86 (48%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V+CH YP +YYCH+ Y + ++ + +A+CH+DT+ W P H F Sbjct: 545 VSCHQTLYPSLLYYCHSVPKVRVYEADI--LDPNSKAKINHGVAICHVDTSSWGPRHGAF 602 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWVRA 157 PG + VCH++ + + W A Sbjct: 603 IALGSGPGKIEVCHWIFENDMTWATA 628
>EA92_VICFA (P21747) Embryonic abundant protein USP92 precursor| Length = 268 Score = 62.0 bits (149), Expect = 8e-10 Identities = 34/84 (40%), Positives = 44/84 (52%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V CH L + V+ CH T AY V+L + +G +AL VCH DT +PE + Sbjct: 179 VMCHRLNFEKVVFNCHQVRETTAYVVSLVASDG----TKTKALTVCHHDTRGMNPELLYE 234 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWV 163 AL V PG V VCHF+ + WV Sbjct: 235 AL-EVTPGTVPVCHFIGNKAAAWV 257
>EA30_VICFA (P21745) Embryonic abundant protein VF30.1 precursor| Length = 268 Score = 62.0 bits (149), Expect = 8e-10 Identities = 34/84 (40%), Positives = 44/84 (52%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V CH L + V+ CH T AY V+L + +G +AL VCH DT +PE + Sbjct: 179 VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDG----TKTKALTVCHHDTRGMNPELLYE 234 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWV 163 AL V PG V VCHF+ + WV Sbjct: 235 AL-EVTPGTVPVCHFIGNKAAAWV 257
>SVF30_VICFA (P09059) Unknown seed protein 30.1 precursor (VF30.1)| Length = 268 Score = 58.2 bits (139), Expect = 1e-08 Identities = 33/84 (39%), Positives = 43/84 (51%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V CH L + V+ CH T AY V+L + +G +AL VCH DT +PE + Sbjct: 179 VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDG----TKTKALTVCHHDTRGMNPELLYE 234 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWV 163 AL V G V VCHF+ + WV Sbjct: 235 AL-EVTLGTVPVCHFIGNKAAAWV 257
>EA87_VICFA (P21746) Embryonic abundant protein USP87 precursor| Length = 268 Score = 58.2 bits (139), Expect = 1e-08 Identities = 33/84 (39%), Positives = 43/84 (51%) Frame = -1 Query: 414 VTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASMEALAVCHLDTTQWSPEHPFF 235 V CH L + V+ CH T AY V+L + +G +AL VCH DT +PE + Sbjct: 179 VMCHRLNFEKVVFNCHQVRDTTAYVVSLVASDG----TKTKALTVCHHDTRGMNPELLYE 234 Query: 234 ALHSVKPGDVAVCHFLTKLSIVWV 163 AL V G V VCHF+ + WV Sbjct: 235 AL-EVTLGTVPVCHFIGNKAAAWV 257
>EZRA_STRP8 (Q8P1M3) Septation ring formation regulator ezrA| Length = 574 Score = 32.0 bits (71), Expect = 0.92 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -1 Query: 468 RGKFNVTAARRLSE--SPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASM 295 RG+ N+ A RLSE + I DLTY V + Y+ S E G + Sbjct: 469 RGRINIEAVSRLSEVATVAIANLEDLTY-QVVQNATLTEQLLQYSNRYRSFEAGVQSSFE 527 Query: 294 EALAVCHLDTT-QWSPEHPFFALHSVKPG 211 AL + ++ Q S + +AL +V+PG Sbjct: 528 HALRLFEVENDYQASFDEISYALETVEPG 556
>EZRA_STRP6 (Q5XD04) Septation ring formation regulator ezrA| Length = 574 Score = 32.0 bits (71), Expect = 0.92 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -1 Query: 468 RGKFNVTAARRLSE--SPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASM 295 RG+ N+ A RLSE + I DLTY V + Y+ S E G + Sbjct: 469 RGRINIEAVSRLSEVATVAIANLEDLTY-QVVQNATLTEQLLQYSNRYRSFEAGVQSSFE 527 Query: 294 EALAVCHLDTT-QWSPEHPFFALHSVKPG 211 AL + ++ Q S + +AL +V+PG Sbjct: 528 HALRLFEVENDYQASFDEISYALETVEPG 556
>EZRA_STRP3 (Q8K839) Septation ring formation regulator ezrA| Length = 574 Score = 32.0 bits (71), Expect = 0.92 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -1 Query: 468 RGKFNVTAARRLSE--SPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASM 295 RG+ N+ A RLSE + I DLTY V + Y+ S E G + Sbjct: 469 RGRINIEAVSRLSEVATVAIANLEDLTY-QVVQNATLTEQLLQYSNRYRSFEAGVQSSFE 527 Query: 294 EALAVCHLDTT-QWSPEHPFFALHSVKPG 211 AL + ++ Q S + +AL +V+PG Sbjct: 528 HALRLFEVENDYQASFDEISYALETVEPG 556
>EZRA_STRP1 (Q9A0K9) Septation ring formation regulator ezrA| Length = 574 Score = 32.0 bits (71), Expect = 0.92 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Frame = -1 Query: 468 RGKFNVTAARRLSE--SPEIVTCHDLTYPYAVYYCHTSNPTAAYAVTLESVEGGTAPASM 295 RG+ N+ A RLSE + I DLTY V + Y+ S E G + Sbjct: 469 RGRINIEAVSRLSEVATVAIANLEDLTY-QVVQNATLTEQLLQYSNRYRSFEAGVQSSFE 527 Query: 294 EALAVCHLDTT-QWSPEHPFFALHSVKPG 211 AL + ++ Q S + +AL +V+PG Sbjct: 528 HALRLFEVENDYQASFDEISYALETVEPG 556
>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11| Length = 319 Score = 31.2 bits (69), Expect = 1.6 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Frame = +3 Query: 6 TAKHTFISYNLDTCP*TRQFHELYVPNLTHPNT-SCAFSPT-----APPHVRLRTHSPAP 167 T HT I + C T F L + LTH T +CA + T AP HV H P P Sbjct: 69 TCTHTHIHASTHVCIHTHTFTHLCIHTLTHALTLTCAPTRTYAHTRAPTHV--HPHKPRP 126 Query: 168 RRCLA 182 R+ A Sbjct: 127 RQLSA 131
>FSHR_MACEU (Q6YNB6) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 694 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 27 SYNLDTCP*TRQFHELYVPNLTHPNTSCAFS 119 +YN T P +F EL NLT+P+ CAF+ Sbjct: 249 AYNFKTLPNLDKFAELVEANLTYPSHCCAFA 279
>LNT_CHLTE (Q8KCC4) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 533 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2 Query: 236 LRCIASNRAMLLCATSSPS*ASSGCGRVSPETHMWR 129 LRCI + RAM CA + + CGR ET W+ Sbjct: 454 LRCIENRRAMARCANTGVTLFYDICGRSYAETPWWQ 489
>DBLOH_HUMAN (Q9NR28) Diablo homolog, mitochondrial precursor (Second| mitochondria-derived activator of caspase) (Smac protein) (Direct IAP-binding protein with low pI) Length = 239 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 83 KSYTSKHIMCFLAYRPATCASPDSLARTQTMLSLVRKWHTATSP--GLTLC 229 KS+ S+ + F YR C + + + L+R WH + G+TLC Sbjct: 5 KSWLSRSVTSFFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTIGFGVTLC 55
>LSHR_RAT (P16235) Lutropin-choriogonadotropic hormone receptor precursor| (LH/CG-R) (LSH-R) (Luteinizing hormone receptor) Length = 700 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 27 SYNLDTCP*TRQFHELYVPNLTHPNTSCAF 116 SY+L T P +F L V LT+P+ CAF Sbjct: 257 SYSLKTLPSKEKFTSLLVATLTYPSHCCAF 286
>LSHR_MOUSE (P30730) Lutropin-choriogonadotropic hormone receptor precursor| (LH/CG-R) (LSH-R) (Luteinizing hormone receptor) Length = 700 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 27 SYNLDTCP*TRQFHELYVPNLTHPNTSCAF 116 SY+L T P +F L V LT+P+ CAF Sbjct: 257 SYSLKTLPSREKFTSLLVATLTYPSHCCAF 286
>ATG4_CRYNE (Q5K9L9) Cysteine protease ATG4 (EC 3.4.22.-) (Autophagy-related| protein 4) Length = 1193 Score = 29.6 bits (65), Expect = 4.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 81 PNLTHPNTSCAFSPTAPPHVRLRTHSPAPR 170 P T P +S FSPT+ PH + +++ PR Sbjct: 4 PTSTSPKSSFVFSPTSFPHAAIASNNVRPR 33
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 493 GSPGHAGIAGEVQRDGCPEALRVTGDRDLP 404 GSPG G AG G P + + GDR LP Sbjct: 348 GSPGEMGEAGPSGEPGIPGDVGIPGDRGLP 377
>ATG5_YARLI (Q6C4Q6) Autophagy protein 5| Length = 255 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +1 Query: 121 LPPRHMCVSGLTRPHPDDA*LGE--EVAHSNIARFDAMQRKERVLRAPLRRVEV 276 LP + C++ + +P DD L + HS++ F + K V RA + VEV Sbjct: 174 LPMSNQCIAAIVKPETDDGKLTTIGQSLHSHLPTFFPSETKPVVARAVVHGVEV 227
>RS3_BDEBA (Q6MJ20) 30S ribosomal protein S3| Length = 221 Score = 29.6 bits (65), Expect = 4.6 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +2 Query: 278 HTANASIDAGAVPPSTLSSVTAYAAVGLDVW 370 HT A ID G T S+TAY +GL VW Sbjct: 176 HTLRADIDYG-----TAESLTAYGIIGLKVW 201
>Y1908_NEIMA (Q9JTA4) UPF0210 protein NMA1908| Length = 451 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 215 GLTLCNAKNGCSGLHCVVSRWHTANASIDAGAVPPSTLSSVTAYAAVGLDV 367 G+ +A G SG VS A+ +AG + L ++TA +VGLD+ Sbjct: 317 GMMASSAVGGLSGAFIPVSEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDM 367
>Y1652_NEIMB (Q9JYC3) UPF0210 protein NMB1652| Length = 451 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 215 GLTLCNAKNGCSGLHCVVSRWHTANASIDAGAVPPSTLSSVTAYAAVGLDV 367 G+ +A G SG VS A+ +AG + L ++TA +VGLD+ Sbjct: 317 GMMASSAVGGLSGAFIPVSEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDM 367
>CTK1_RABIT (P49659) Voltage independent pH-sensitive potassium channel| (RACTK1) Length = 284 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = +2 Query: 224 LCNAKNGCSGLH-CVVSRWHTANASIDAGAVPPSTLS---SVTAYAAV 355 LC+ + G+ C +S H A AS D+G + P +S +VT +A+ Sbjct: 120 LCSGSSDSGGIRPCAISPRHLAAASSDSGGIRPCAISCDKNVTTLSAI 167
>DBLOH_PONPY (Q5RBH2) Diablo homolog, mitochondrial precursor| Length = 239 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +2 Query: 83 KSYTSKHIMCFLAYRPATCASPDSLARTQTMLSLVRKWHTATSP--GLTLC 229 KS+ S+ + YR C + + + L+R WH + G+TLC Sbjct: 5 KSWLSRSVTLLFRYRQCLCVPVVANFKKRCFSELIRPWHKTVTVGFGVTLC 55
>HIS5_ARATH (Q9SZ30) Imidazole glycerol phosphate synthase hisHF, chloroplast| precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] Length = 592 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = -3 Query: 472 IAGEVQRDGCPEA--LRVTGDRDLPRLDVPVCGVL 374 +AG+ +DG E L +TG RD P D+P+ VL Sbjct: 326 LAGQYYKDGADEISFLNITGFRDFPLGDLPMIQVL 360
>Y1545_CORGL (Q8NQ93) UPF0210 protein Cgl1545/cg1743| Length = 464 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 215 GLTLCNAKNGCSGLHCVVSRWHTANASIDAGAVPPSTLSSVTAYAAVGLDV 367 G+ C+ G SG VS ++ GA+ L ++TA +VGLD+ Sbjct: 330 GMMACSRVGGLSGSFIPVSEDKGMIDAVRTGAISIDKLEAMTAICSVGLDM 380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,251,618 Number of Sequences: 219361 Number of extensions: 1598183 Number of successful extensions: 4793 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4769 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
