ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34g08 |
|---|---|
| Clone Library Name | barley_pub |
>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 760 Score = 32.3 bits (72), Expect = 0.64 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = -1 Query: 466 RAVAIQHERQKEFD--ERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQSS 302 R +A + ERQ++ ++ ++ KQ LQYQ QL I +M L+Q QQ + Sbjct: 466 RRIAEEQERQRQMQMAQKLDIMRKKKQEYLQYQRQLALQRIQEQEREMQLRQEQQKA 522
>CD68_HUMAN (P34810) Macrosialin precursor (GP110) (CD68 antigen)| Length = 354 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 67 PTYHLHGSLAPHPTANRWSANQHPPN*SESQATT 168 PT HG++ HPT+N + +Q P + S ATT Sbjct: 81 PTTTSHGNVTVHPTSNSTATSQGPSTATHSPATT 114
>SNPC4_MOUSE (Q8BP86) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)| (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) Length = 1333 Score = 31.2 bits (69), Expect = 1.4 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Frame = +3 Query: 105 HGQQVVSKPTSTQLV*IPGNNIF*SSSPSYGRVPL--VSTLNPQGPGLINISLKPN*KTS 278 HG VV TS+ + +P + SSSPS G P+ +S + Q P L ISL P K Sbjct: 910 HGSPVVGPATSSVELSVPVAPVMVSSSPS-GSWPVGGISATDKQPPNLQTISLNPPHK-- 966 Query: 279 GL*RPGMELLCWACFRCICSA 341 G ++ A FR + A Sbjct: 967 -----GTQVAAPAAFRSLALA 982
>SEC3_YEAST (P33332) Exocyst complex component SEC3 (Protein PSL1)| Length = 1336 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -1 Query: 469 KRAVAIQHERQKEFDERSH--EVQGLKQLVLQYQEQL---RTLEINNYALQMHLKQAQQS 305 KR + ++H+RQ E +ER E++ KQ+ L+ Q Q + L+ L++ KQ +Q Sbjct: 374 KRQMELEHQRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQE 433 Query: 304 SS 299 ++ Sbjct: 434 TA 435
>KE4_BRARE (Q9PUB8) Zinc transporter Slc39a7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) (Fragment) Length = 352 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = +1 Query: 76 HLHGSLAPHPTANRWSANQHPPN*SESQATTFSSHLHHHTAEY 204 H HG H A++WSA + P+ E H H H ++ Sbjct: 39 HSHGGAKMHHGASKWSAEANLPHAEEEHHVHDHGHTHDHAHDH 81
>CAH_ERWCA (O52538) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate| dehydratase) Length = 244 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +1 Query: 73 YHLHGSLAPHPTAN--RWSANQHPPN*SESQATTFSSHLHH 189 Y GSL P + RW HP S Q + FSS +HH Sbjct: 188 YRFSGSLTTPPCSEGIRWLVLDHPVTASAEQISQFSSVMHH 228
>GCC2_MOUSE (Q8CHG3) GRIP and coiled-coil domain-containing protein 2 (Golgi| coiled coil protein GCC185) Length = 1679 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = -1 Query: 475 VLKRAVAIQHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQSSSM 296 V K A + +++++ E V L++L LQ+Q++ + L+ L++ K AQQ++ M Sbjct: 1090 VEKELDAEELQKEQKIKEHVSTVNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLM 1149
>CAH_ERWCT (Q6DAJ6) Carbonic anhydrase precursor (EC 4.2.1.1) (Carbonate| dehydratase) Length = 244 Score = 30.0 bits (66), Expect = 3.2 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +1 Query: 73 YHLHGSLAPHPTAN--RWSANQHPPN*SESQATTFSSHLHH 189 Y GSL P + RW HP S Q FSS +HH Sbjct: 188 YRFSGSLTTPPCSEGIRWLVLDHPVTASAEQINQFSSVMHH 228
>SBCC_ECOLI (P13458) Exonuclease sbcC| Length = 1048 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%) Frame = -1 Query: 451 QHERQKEFDERSHEVQGL----KQLVLQYQEQLRTLE------INNYALQMHLKQAQQS 305 +HERQ + HE+QG Q ++QYQ+Q+ + + YAL + + ++S Sbjct: 607 EHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEES 665
>TEKT1_MOUSE (Q9DAJ2) Tektin-1| Length = 418 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 451 QHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLK 320 Q+ KE E +H V LK+ + Q Q QL+ L ALQ ++ Sbjct: 334 QYRLIKEIQEINHNVARLKETLAQAQTQLKALYRRQLALQEEIQ 377
>CEP2_MOUSE (Q60952) Centrosomal protein 2 (Intranuclear matrix protein)| (Fragment) Length = 609 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = -1 Query: 424 ERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQA 314 +R HE++ L+Q Q Q+Q ++++ ALQ L+QA Sbjct: 1 QRDHELETLRQEKQQTQDQEESMKLKTSALQPALEQA 37
>KLP8_SCHPO (Q9UTL2) Kinesin-like protein 8| Length = 511 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -1 Query: 445 ERQKEFDERSHEV-QGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQSSSMPGRYNPD 275 E+ + +E S ++ + ++++ Y+E++ LE N AL+ HL+ A + P +N D Sbjct: 388 EQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAYLNPLEFNFD 445
>CCD21_MOUSE (Q8BMK0) Coiled-coil domain-containing protein 21| Length = 761 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -1 Query: 472 LKRAVAIQHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQSSS 299 L + I ++E R +Q ++ V + Q + L N LQ HL+QAQ SS Sbjct: 603 LAQEEGINQALREEAQRRETALQQMRTAVKELSVQNQDLIEKNLTLQEHLRQAQPGSS 660
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Frame = +3 Query: 309 CWACFRCICSA*LLISRVLS--CSWYC-RTSCFRPCTSWLRSSNSFCRS 446 C C C CS+ S S C YC ++SC +PC+ + +S C+S Sbjct: 151 CSCCKPCCCSSGCGSSCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQS 199
>TAF9B_HUMAN (Q9HBM6) Transcription initiation factor TFIID subunit 9B| (Transcription initiation factor TFIID subunit 9-like protein) (Transcription-associated factor TAFII31L) (Neuronal cell death-related protein 7) (DN-7) Length = 251 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +2 Query: 92 LRPIPRPTGGQQTNIHPTSLNPRQQHFLVIFTIIRQSTTSLNSQSPRARAHQ 247 ++P+P T Q I+P+ + P+ ++I T + S + N +P R H+ Sbjct: 195 VKPVPATTAVQNVLINPSMIGPKN---ILITTNMVSSQNTANEANPLKRKHE 243
>SEPR_THESR (P80146) Extracellular serine proteinase precursor (EC 3.4.21.-)| Length = 410 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -1 Query: 247 LMSPGPWGLRVETSGTLPYDGEDD*KMLLPGIQTSWVDVGLLTTCWPWDGAQGSHVD 77 + SP WGL TLP DG G+ VD G+L + + G G D Sbjct: 134 VQSPATWGLDRIDQRTLPLDGRYTYTATGAGVHAYVVDTGILLSHQEFTGRIGKGYD 190
>TEKT1_HUMAN (Q969V4) Tektin-1| Length = 418 Score = 28.9 bits (63), Expect = 7.1 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 451 QHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLK 320 Q+ KE E +H V LK+ + Q Q +L+ L ALQ ++ Sbjct: 334 QYRLMKEVQEITHNVARLKETLAQAQAELKGLHRRQLALQEEIQ 377
>XNIF_XENLA (P35617) Low molecular weight neuronal intermediate filament (XNIF)| Length = 470 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = -1 Query: 472 LKRAVAIQHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQSSSMP 293 L ++ A+ +E + ++QGL + Y E++ LE N L+ + +Q S P Sbjct: 71 LSQSTALSNELKIVRTNEKEQLQGLNDRFVTYIEKVHHLEQQNKLLESEVTLLRQKHSEP 130 Query: 292 GR 287 R Sbjct: 131 SR 132
>SGOL1_XENLA (Q4KLP8) Shugoshin-like 1 (Xsgo)| Length = 663 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2 Query: 131 NIHPTSLNPRQQHFL-VIFTIIRQSTTSLNSQSPRARAHQHQPE--AKLED 274 N+ P L P Q++F + ++T +N QS R+H +QP ++LE+ Sbjct: 184 NVIPNRLEPEQRNFKDKVVLEANRNTAGVNRQSRGRRSHSNQPSFTSRLEE 234
>RNG_SHIFL (P0A9J3) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 166 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 50 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECOLI (P0A9J0) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 166 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 50 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECOL6 (P0A9J1) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 166 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 50 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>RNG_ECO57 (P0A9J2) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 166 LLPGIQTSWVDVGLLTTCWPWDGAQGSHVDDMLVQTCCV 50 +LPG+Q ++VD+GL D A H D++ T CV Sbjct: 48 VLPGMQAAFVDIGL-------DKAAFLHASDIMPHTECV 79
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -1 Query: 451 QHERQKEFDERSHEVQGLKQLVLQYQEQLRTLEINNYALQMHLKQAQQ 308 QH +Q + + ++Q +Q Q Q+Q ++ ++ LQ H Q QQ Sbjct: 148 QHHQQMQQQQHHQQMQQQQQHHQQMQQQQHHQQMQHHQLQQHQHQHQQ 195
>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)| Length = 723 Score = 28.5 bits (62), Expect = 9.2 Identities = 26/71 (36%), Positives = 36/71 (50%) Frame = +3 Query: 21 CVYIKYENV*TQQV*TNISSTWEPCAPSHGQQVVSKPTSTQLV*IPGNNIF*SSSPSYGR 200 CV + ++NV ++ TN S+ S GQ VVS P+S V I G N + SPS R Sbjct: 349 CV-VAFQNVFSKPKGTNSSAV----PLSQGQVVVSPPSSRSAVSIGGGNTS-AVSPSSIR 402 Query: 201 VPLVSTLNPQG 233 ++L P G Sbjct: 403 GSAAASLQPLG 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,632,707 Number of Sequences: 219361 Number of extensions: 1267139 Number of successful extensions: 3893 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3870 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
