ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE5_RHPV1 (P24834) Probable protein E5 32 1.4
2RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-... 29 6.9

>VE5_RHPV1 (P24834) Probable protein E5|
          Length = 157

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 231 FRLARCCCYCIIKRSLHIREH*FVVF-VCLSV 139
           F L  CCC+C+    +H+    F VF VCLSV
Sbjct: 42  FWLCFCCCFCLALCFVHLLSRCFCVFPVCLSV 73



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>RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-dependent|
           helicase RAD16)
          Length = 790

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 54  FGDRNGHFVLPLPCHAMLLYRVIQEEANRQTDRQTQQINVLLYVET 191
           F  +NG F  P   H +  YRVI +EA+   DRQ+     +  ++T
Sbjct: 298 FRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKT 343


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,540,047
Number of Sequences: 219361
Number of extensions: 850896
Number of successful extensions: 1811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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