Clone Name | rbart34g05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | VE5_RHPV1 (P24834) Probable protein E5 | 32 | 1.4 | 2 | RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-... | 29 | 6.9 |
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>VE5_RHPV1 (P24834) Probable protein E5| Length = 157 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -3 Query: 231 FRLARCCCYCIIKRSLHIREH*FVVF-VCLSV 139 F L CCC+C+ +H+ F VF VCLSV Sbjct: 42 FWLCFCCCFCLALCFVHLLSRCFCVFPVCLSV 73
>RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-dependent| helicase RAD16) Length = 790 Score = 29.3 bits (64), Expect = 6.9 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 54 FGDRNGHFVLPLPCHAMLLYRVIQEEANRQTDRQTQQINVLLYVET 191 F +NG F P H + YRVI +EA+ DRQ+ + ++T Sbjct: 298 FRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKT 343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,540,047 Number of Sequences: 219361 Number of extensions: 850896 Number of successful extensions: 1811 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1785 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1811 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)