ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467483.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
2ref|XM_506940.1| PREDICTED Oryza sativa (japonica cultivar-group... 82 1e-12
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
5dbj|AK121801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
6dbj|AK067050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
7gb|AF463836.1| Oryza sativa (japonica cultivar-group) transgenic... 74 4e-10
8ref|XM_948156.1| Theileria annulata strain Ankara short-chain de... 40 5.0
9gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 40 5.0
10gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y,... 40 5.0
11ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 5.0
12gb|AC105267.3| Homo sapiens chromosome 3 clone CTD-3211M3, compl... 40 5.0 
>ref|XM_467483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1230

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 307  ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
            |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 1065 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 1006

                     
Query: 367  gaagcaatg 375
            |||||||||
Sbjct: 1005 gaagcaatg 997
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>ref|XM_506940.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.18 mRNA
          Length = 1650

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 307  ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
            |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 1191 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 1132

                     
Query: 367  gaagcaatg 375
            |||||||||
Sbjct: 1131 gaagcaatg 1123
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 307      ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
                |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 29804075 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 29804016

                         
Query: 367      gaagcaatg 375
                |||||||||
Sbjct: 29804015 gaagcaatg 29804007
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 307   ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
             |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 60420 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 60361

                      
Query: 367   gaagcaatg 375
             |||||||||
Sbjct: 60360 gaagcaatg 60352
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>dbj|AK121801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097G14, full
            insert sequence
          Length = 1632

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 307  ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
            |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 1065 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 1006

                     
Query: 367  gaagcaatg 375
            |||||||||
Sbjct: 1005 gaagcaatg 997
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>dbj|AK067050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A12, full
            insert sequence
          Length = 1650

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 307  ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
            |||||||||||||||| ||  |||||||||||||||||||||||||| || || ||||| 
Sbjct: 1191 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatca 1132

                     
Query: 367  gaagcaatg 375
            |||||||||
Sbjct: 1131 gaagcaatg 1123
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>gb|AF463836.1| Oryza sativa (japonica cultivar-group) transgenic plant p0841
           integrated T-DNA(Ds), flanking sequence
          Length = 601

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                       
Query: 307 ggataactatgagcattgggggcttcagcaaagtggcccaatggcttgagcgtcgcatcg 366
           |||||||||||||||| ||  ||||||||||||||||||||||||||  | || ||||| 
Sbjct: 381 ggataactatgagcatcggatgcttcagcaaagtggcccaatggcttaggggttgcatca 440

                    
Query: 367 gaagcaatg 375
           |||||||||
Sbjct: 441 gaagcaatg 449
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>ref|XM_948156.1| Theileria annulata strain Ankara short-chain
           dehydrogenase/reductase (TA10925) partial mRNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 gcaaccttccctttcaaatt 260
           ||||||||||||||||||||
Sbjct: 356 gcaaccttccctttcaaatt 337
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     gcactattatttagttttca 34
              ||||||||||||||||||||
Sbjct: 338721 gcactattatttagttttca 338702



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     gcactattatttagttttca 34
              ||||||||||||||||||||
Sbjct: 249211 gcactattatttagttttca 249192



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     gcactattatttagttttca 34
              ||||||||||||||||||||
Sbjct: 228868 gcactattatttagttttca 228849
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>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence
          Length = 187894

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     aacaacagtagcactattatttag 28
             |||||| |||||||||||||||||
Sbjct: 67257 aacaactgtagcactattatttag 67280
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
              (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      aacaacagtagcactattatttag 28
              |||||| |||||||||||||||||
Sbjct: 518658 aacaactgtagcactattatttag 518681
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>gb|AC105267.3| Homo sapiens chromosome 3 clone CTD-3211M3, complete sequence
          Length = 156795

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 103    ggcataaatagaaaggtatgtgaa 126
              ||||||| ||||||||||||||||
Sbjct: 131884 ggcataattagaaaggtatgtgaa 131907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,652,971
Number of Sequences: 3902068
Number of extensions: 2652971
Number of successful extensions: 50598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50563
Number of HSP's gapped (non-prelim): 35
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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