>ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA
          Length = 996

 Score =  198 bits (100), Expect = 1e-47
 Identities = 217/256 (84%)
 Strand = Plus / Minus

                                                                       
Query: 187 cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 246
           |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 952 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 893

                                                                       
Query: 247 aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 306
           |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 892 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 833

                                                                       
Query: 307 tggtgaggaaccgcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 366
           ||||||||||| | ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 832 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 773

                                                                       
Query: 367 ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 426
           |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 772 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 713

                           
Query: 427 acacgttggcgctgca 442
           ||||||||||||||||
Sbjct: 712 acacgttggcgctgca 697

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  198 bits (100), Expect = 1e-47
 Identities = 217/256 (84%)
 Strand = Plus / Plus

                                                                           
Query: 187     cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 246
               |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 7184527 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 7184586

                                                                           
Query: 247     aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 306
               |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 7184587 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 7184646

                                                                           
Query: 307     tggtgaggaaccgcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 366
               ||||||||||| | ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 7184647 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 7184706

                                                                           
Query: 367     ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 426
               |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 7184707 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 7184766

                               
Query: 427     acacgttggcgctgca 442
               ||||||||||||||||
Sbjct: 7184767 acacgttggcgctgca 7184782

>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score =  198 bits (100), Expect = 1e-47
 Identities = 217/256 (84%)
 Strand = Plus / Plus

                                                                         
Query: 187   cgagcagcggcacgaacttgagcatgacttggacggcgttcttggcggcgatgtcgatga 246
             |||| ||||| ||||| ||||||||||| | ||||||||||| |||||||||| ||| ||
Sbjct: 79175 cgaggagcgggacgaagttgagcatgacgtcgacggcgttctgggcggcgatggcgagga 79234

                                                                         
Query: 247   aggtgctggcctcgttcccgagcgcggagcctcccccggcgaggtcggagagcgagcgga 306
             |   || ||||||||| ||||||| |||||| || || |||||||||||||| |||||||
Sbjct: 79235 actcgccggcctcgttgccgagcgaggagccgccgccagcgaggtcggagagggagcgga 79294

                                                                         
Query: 307   tggtgaggaaccgcaccccctgcgtgtgcgccacgagggccacggcagcgctctccatct 366
             ||||||||||| | ||  | |||  |||||||||||| |||||||| |||||||||||||
Sbjct: 79295 tggtgaggaacgggacggcgtgctggtgcgccacgagcgccacggcggcgctctccatct 79354

                                                                         
Query: 367   ccacgggggtgcacccgaactgcttgcggaggaactggcggtactcggcgttgtccagga 426
             |||| || |||||||||||||     || |||||||| |||||  |||||||||| ||||
Sbjct: 79355 ccaccggcgtgcacccgaacttggcccgcaggaactgacggtaggcggcgttgtcgagga 79414

                             
Query: 427   acacgttggcgctgca 442
             ||||||||||||||||
Sbjct: 79415 acacgttggcgctgca 79430

>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
              complete sequence
          Length = 138209

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                          
Query: 269    cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaaccgcaccccctg 328
              ||||||||| || |||||||||||||||||||| || |||| || |||| || |||||||
Sbjct: 111726 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 111785

               
Query: 329    c 329
              |
Sbjct: 111786 c 111786

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                           
Query: 269     cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaaccgcaccccctg 328
               ||||||||| || |||||||||||||||||||| || |||| || |||| || |||||||
Sbjct: 7675331 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 7675390

                
Query: 329     c 329
               |
Sbjct: 7675391 c 7675391

>dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055L05, full
            insert sequence
          Length = 1387

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 269  cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaaccgcaccccctg 328
            ||||||||| || |||||||||||||||||||| || |||| || |||| || |||||||
Sbjct: 1142 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1083

             
Query: 329  c 329
            |
Sbjct: 1082 c 1082

>dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full
            insert sequence
          Length = 1470

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 269  cgcggagcctcccccggcgaggtcggagagcgagcggatggtgaggaaccgcaccccctg 328
            ||||||||| || |||||||||||||||||||| || |||| || |||| || |||||||
Sbjct: 1225 cgcggagccgccgccggcgaggtcggagagcgaccgtatggcgatgaacggcgccccctg 1166

             
Query: 329  c 329
            |
Sbjct: 1165 c 1165

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 146     gtccgcggccgcgccgtcgtcc 167
               ||||||||||||||||||||||
Sbjct: 1696642 gtccgcggccgcgccgtcgtcc 1696663

>gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5, mRNA
           (cDNA clone MGC:111955 IMAGE:7248997), complete cds
          Length = 541

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 116 tggacaagtggctgctggctca 137
           ||||||||||||||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131

>ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5
           (ndufs5), mRNA
          Length = 541

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 116 tggacaagtggctgctggctca 137
           ||||||||||||||||||||||
Sbjct: 110 tggacaagtggctgctggctca 131

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 146     gtccgcggccgcgccgtcgtcc 167
               ||||||||||||||||||||||
Sbjct: 3031532 gtccgcggccgcgccgtcgtcc 3031553

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 146     gtccgcggccgcgccgtcgtcc 167
               ||||||||||||||||||||||
Sbjct: 2180357 gtccgcggccgcgccgtcgtcc 2180378

>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19,
             complete sequence
          Length = 118451

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 116   tggacaagtggctgctggctca 137
             ||||||||||||||||||||||
Sbjct: 57921 tggacaagtggctgctggctca 57900

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 280     ccccggcgaggtcggagagcg 300
               |||||||||||||||||||||
Sbjct: 1023950 ccccggcgaggtcggagagcg 1023930

>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      ggctcatcaactgtgatttga 22
              |||||||||||||||||||||
Sbjct: 140859 ggctcatcaactgtgatttga 140879

>gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partial sequence
          Length = 45375

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   gagcgcggagcctcccccggc 286
             |||||||||||||||||||||
Sbjct: 16121 gagcgcggagcctcccccggc 16101

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 464    ccgcggcgcgcggggcaagca 484
              |||||||||||||||||||||
Sbjct: 725567 ccgcggcgcgcggggcaagca 725587

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 230     ggcggcgatgtcgatgaaggt 250
               |||||||||||||||||||||
Sbjct: 4024810 ggcggcgatgtcgatgaaggt 4024830

>ref|XM_469921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 cggcgaggtcggagagcgag 302
           ||||||||||||||||||||
Sbjct: 391 cggcgaggtcggagagcgag 372

>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    gctgcagcccttgctgactc 456
              ||||||||||||||||||||
Sbjct: 160929 gctgcagcccttgctgactc 160948

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      cggcgaggtcggagagcgag 302
                ||||||||||||||||||||
Sbjct: 32498522 cggcgaggtcggagagcgag 32498541

>gb|AY224542.1| Oryza sativa (japonica cultivar-group) isolate 23484 heavy
           meromyosin-like protein mRNA, complete cds
          Length = 1071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 cggcgaggtcggagagcgag 302
           ||||||||||||||||||||
Sbjct: 391 cggcgaggtcggagagcgag 372

>ref|XM_534485.2| PREDICTED: Canis familiaris similar to thrombospondin type I
            domain-containing 1 isoform 1 (LOC477293), mRNA
          Length = 2824

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  tgtccgcggccgcgccgtcg 164
            ||||||||||||||||||||
Sbjct: 1777 tgtccgcggccgcgccgtcg 1758

>emb|BX063779.1|CNS09LDJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC45DC05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 930

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 189 agcagcggcacgaacttgagcatg 212
           |||||||| |||||||||||||||
Sbjct: 646 agcagcggaacgaacttgagcatg 669

>gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 233589

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    ccacgagggccacggcagcg 356
              ||||||||||||||||||||
Sbjct: 131205 ccacgagggccacggcagcg 131186

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     cgcgccgtcgtccatctcct 174
               ||||||||||||||||||||
Sbjct: 1294753 cgcgccgtcgtccatctcct 1294772

>gb|AE012392.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 300
            of 460 of the complete genome
          Length = 10825

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  cgcgccgtcgtccatctcct 174
            ||||||||||||||||||||
Sbjct: 5403 cgcgccgtcgtccatctcct 5384

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     cgcgccgtcgtccatctcct 174
               ||||||||||||||||||||
Sbjct: 1603085 cgcgccgtcgtccatctcct 1603104

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      cggcgaggtcggagagcgag 302
                ||||||||||||||||||||
Sbjct: 32589032 cggcgaggtcggagagcgag 32589051

>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   cggcgaggtcggagagcgag 302
             ||||||||||||||||||||
Sbjct: 31971 cggcgaggtcggagagcgag 31990

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     ggcggcgatgtcgatgaaggtgct 253
               |||| |||||||||||||||||||
Sbjct: 1475942 ggcgacgatgtcgatgaaggtgct 1475965

>dbj|AK071787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110P10, full
           insert sequence
          Length = 1524

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 cggcgaggtcggagagcgag 302
           ||||||||||||||||||||
Sbjct: 546 cggcgaggtcggagagcgag 527

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     cgttcttggcggcgatgtcg 242
               ||||||||||||||||||||
Sbjct: 1199176 cgttcttggcggcgatgtcg 1199195

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 155     cgcgccgtcgtccatctcct 174
               ||||||||||||||||||||
Sbjct: 1318531 cgcgccgtcgtccatctcct 1318550


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,920,436
Number of Sequences: 3902068
Number of extensions: 2920436
Number of successful extensions: 56409
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55193
Number of HSP's gapped (non-prelim): 1213
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)