Clone Name | rbart34f05 |
---|---|
Clone Library Name | barley_pub |
>APO3_ARATH (Q9FH50) APO protein 3, mitochondrial precursor| Length = 402 Score = 31.2 bits (69), Expect = 0.61 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Frame = +1 Query: 241 CSHRIKTLFPIGGSGTKLSCSSSPTAGCRKTGRLHT--QGH---TCWGAGQGRRSRTH 399 C HR + + SG P CR +H QGH TC G G G RS TH Sbjct: 104 CVHRCRNMLL---SGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATH 158
>V_RINDR (Q03340) Nonstructural protein V| Length = 299 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 254 SKPCFPLEGVGRSSLALAH 310 SKPCFP G G+SS++ H Sbjct: 61 SKPCFPAAGPGKSSMSRCH 79
>V_RINDK (P60169) Nonstructural protein V| Length = 299 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 254 SKPCFPLEGVGRSSLALAH 310 SKPCFP G G+SS++ H Sbjct: 61 SKPCFPAAGPGKSSMSRCH 79
>PHOSP_RINDR (Q03335) Phosphoprotein (Protein P)| Length = 507 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 254 SKPCFPLEGVGRSSLALAH 310 SKPCFP G G+SS++ H Sbjct: 61 SKPCFPAAGPGKSSMSRCH 79
>PHOSP_RINDK (P35945) Phosphoprotein (Protein P)| Length = 507 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = +2 Query: 254 SKPCFPLEGVGRSSLALAH 310 SKPCFP G G+SS++ H Sbjct: 61 SKPCFPAAGPGKSSMSRCH 79
>FETA_CHICK (P84407) Alpha-fetoprotein precursor (Alpha-fetoglobulin)| (Alpha-1-fetoprotein) Length = 615 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -1 Query: 392 RLRLPCPAPQHVCPCVWSLPVLRQPAVGELE-QESFVPL 279 R L P VC C S LR+P +G+LE E++VPL Sbjct: 486 RRHLTNPINPAVCHCCSSSYALRRPCMGKLEIDENYVPL 524
>G3PT_MOUSE (Q64467) Glyceraldehyde-3-phosphate dehydrogenase, testis-specific| (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2) Length = 440 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -1 Query: 392 RLRLPCPAPQHVCPCVWSLPVLRQP 318 R R PCP P CPC PV+R P Sbjct: 18 RDRCPCPCP---CPCPCPCPVIRPP 39
>SSPO_BOVIN (P98167) SCO-spondin (Fragment)| Length = 867 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +1 Query: 298 CSSSPTAGCRKTGRLHTQGHTCWGAGQGRRSRTHH 402 C + P GC + GR+H G W AG R + H Sbjct: 238 CQTEPCEGCEQDGRVHRVGER-WRAGPCRVCQCLH 271
>INHA_TRIVU (O77755) Inhibin alpha chain precursor| Length = 361 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 380 PCPAPQHVCPCVWSLPVLRQPAVGELEQESFVPLPP 273 PCPA P + + R P+VGE + S PLPP Sbjct: 202 PCPAQLDATPFLVAHTRARPPSVGERARRS--PLPP 235
>KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) (Plasma| prekallikrein) (Kininogenin) (Fletcher factor) [Contains: Plasma kallikrein heavy chain; Plasma kallikrein light chain] Length = 638 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +1 Query: 274 GGSGTKLSCSSSPTAGCRKTGRLHTQGHTCWGAGQGRRSR 393 GG+ S P C+ +GR G T WG G GR+ + Sbjct: 569 GGTDACKGDSGGPLV-CKHSGRWQLVGITSWGEGCGRKDQ 607
>SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1)| Length = 211 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 272 LEGVGRSSLALAHQLLVAVKRVGSIRRGIHVGVRDRGG 385 LEG G S QLL +R+ ++ GIH VR+ GG Sbjct: 43 LEGAGLDSEEPVEQLL---RRIPALPPGIHGAVRNHGG 77
>LEU3_ERWCT (Q6D0G7) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 363 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +2 Query: 269 PLEGVGRSSLALAHQLLVAVKRVGSIRRGIHVGVRDRGGVAV 394 P +G+G +A AH++L AV++ IR I D GG+A+ Sbjct: 11 PGDGIGPEVMAQAHKVLDAVRQRFGIR--ITTSEYDVGGIAI 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,059,414 Number of Sequences: 219361 Number of extensions: 704723 Number of successful extensions: 1773 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1773 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)