ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APO3_ARATH (Q9FH50) APO protein 3, mitochondrial precursor 31 0.61
2V_RINDR (Q03340) Nonstructural protein V 30 1.8
3V_RINDK (P60169) Nonstructural protein V 30 1.8
4PHOSP_RINDR (Q03335) Phosphoprotein (Protein P) 30 1.8
5PHOSP_RINDK (P35945) Phosphoprotein (Protein P) 30 1.8
6FETA_CHICK (P84407) Alpha-fetoprotein precursor (Alpha-fetoglobu... 30 1.8
7G3PT_MOUSE (Q64467) Glyceraldehyde-3-phosphate dehydrogenase, te... 29 2.3
8SSPO_BOVIN (P98167) SCO-spondin (Fragment) 28 5.2
9INHA_TRIVU (O77755) Inhibin alpha chain precursor 27 8.9
10KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) ... 27 8.9
11SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1) 27 8.9
12LEU3_ERWCT (Q6D0G7) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 27 8.9

>APO3_ARATH (Q9FH50) APO protein 3, mitochondrial precursor|
          Length = 402

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = +1

Query: 241 CSHRIKTLFPIGGSGTKLSCSSSPTAGCRKTGRLHT--QGH---TCWGAGQGRRSRTH 399
           C HR + +     SG        P   CR    +H   QGH   TC G G G RS TH
Sbjct: 104 CVHRCRNMLL---SGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATH 158



to top

>V_RINDR (Q03340) Nonstructural protein V|
          Length = 299

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 SKPCFPLEGVGRSSLALAH 310
           SKPCFP  G G+SS++  H
Sbjct: 61  SKPCFPAAGPGKSSMSRCH 79



to top

>V_RINDK (P60169) Nonstructural protein V|
          Length = 299

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 SKPCFPLEGVGRSSLALAH 310
           SKPCFP  G G+SS++  H
Sbjct: 61  SKPCFPAAGPGKSSMSRCH 79



to top

>PHOSP_RINDR (Q03335) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 SKPCFPLEGVGRSSLALAH 310
           SKPCFP  G G+SS++  H
Sbjct: 61  SKPCFPAAGPGKSSMSRCH 79



to top

>PHOSP_RINDK (P35945) Phosphoprotein (Protein P)|
          Length = 507

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254 SKPCFPLEGVGRSSLALAH 310
           SKPCFP  G G+SS++  H
Sbjct: 61  SKPCFPAAGPGKSSMSRCH 79



to top

>FETA_CHICK (P84407) Alpha-fetoprotein precursor (Alpha-fetoglobulin)|
           (Alpha-1-fetoprotein)
          Length = 615

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 392 RLRLPCPAPQHVCPCVWSLPVLRQPAVGELE-QESFVPL 279
           R  L  P    VC C  S   LR+P +G+LE  E++VPL
Sbjct: 486 RRHLTNPINPAVCHCCSSSYALRRPCMGKLEIDENYVPL 524



to top

>G3PT_MOUSE (Q64467) Glyceraldehyde-3-phosphate dehydrogenase, testis-specific|
           (EC 1.2.1.12) (Spermatogenic cell-specific
           glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2)
          Length = 440

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 392 RLRLPCPAPQHVCPCVWSLPVLRQP 318
           R R PCP P   CPC    PV+R P
Sbjct: 18  RDRCPCPCP---CPCPCPCPVIRPP 39



to top

>SSPO_BOVIN (P98167) SCO-spondin (Fragment)|
          Length = 867

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 298 CSSSPTAGCRKTGRLHTQGHTCWGAGQGRRSRTHH 402
           C + P  GC + GR+H  G   W AG  R  +  H
Sbjct: 238 CQTEPCEGCEQDGRVHRVGER-WRAGPCRVCQCLH 271



to top

>INHA_TRIVU (O77755) Inhibin alpha chain precursor|
          Length = 361

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 380 PCPAPQHVCPCVWSLPVLRQPAVGELEQESFVPLPP 273
           PCPA     P + +    R P+VGE  + S  PLPP
Sbjct: 202 PCPAQLDATPFLVAHTRARPPSVGERARRS--PLPP 235



to top

>KLKB1_MOUSE (P26262) Plasma kallikrein precursor (EC 3.4.21.34) (Plasma|
           prekallikrein) (Kininogenin) (Fletcher factor)
           [Contains: Plasma kallikrein heavy chain; Plasma
           kallikrein light chain]
          Length = 638

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 274 GGSGTKLSCSSSPTAGCRKTGRLHTQGHTCWGAGQGRRSR 393
           GG+      S  P   C+ +GR    G T WG G GR+ +
Sbjct: 569 GGTDACKGDSGGPLV-CKHSGRWQLVGITSWGEGCGRKDQ 607



to top

>SODM_BORPE (P53642) Superoxide dismutase [Mn] (EC 1.15.1.1)|
          Length = 211

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 272 LEGVGRSSLALAHQLLVAVKRVGSIRRGIHVGVRDRGG 385
           LEG G  S     QLL   +R+ ++  GIH  VR+ GG
Sbjct: 43  LEGAGLDSEEPVEQLL---RRIPALPPGIHGAVRNHGG 77



to top

>LEU3_ERWCT (Q6D0G7) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 363

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 269 PLEGVGRSSLALAHQLLVAVKRVGSIRRGIHVGVRDRGGVAV 394
           P +G+G   +A AH++L AV++   IR  I     D GG+A+
Sbjct: 11  PGDGIGPEVMAQAHKVLDAVRQRFGIR--ITTSEYDVGGIAI 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,059,414
Number of Sequences: 219361
Number of extensions: 704723
Number of successful extensions: 1773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top