Clone Name | rbart34f04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK065673.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035D19, full insert sequence Length = 1317 Score = 196 bits (99), Expect = 5e-47 Identities = 171/195 (87%) Strand = Plus / Minus Query: 315 tcatctcatgttgccctccctcaggacattgatcatatcgtacaatttcttgtccgcccc 374 |||||||||||||||||| || ||||||| |||||||| || |||||||||| || || Sbjct: 1113 tcatctcatgttgccctctcttaggacatcaatcatatcatataatttcttgttggcacc 1054 Query: 375 agatcgtatctttgtgtggagaaacatggcagcatcaacagttccctctgcgtatattga 434 |||| |||||||| | |||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct: 1053 agattgtatctttttatggagaaacagggcagcatccacagttccctctgcgtaaattga 994 Query: 435 acggccacatacattgtgctggaactcaaatgacactgtttcgtcaggcgaagtgagatg 494 |||||||||||||||||| || ||||||||||| ||||| || || || ||||||||||| Sbjct: 993 acggccacatacattgtgttgaaactcaaatgaaactgtctcatccggtgaagtgagatg 934 Query: 495 gtaattgtgaaatgc 509 ||| |||||||||| Sbjct: 933 gtacatgtgaaatgc 919
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 6e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 391 tggagaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattg 450 |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 14017470 tggagaaacagggcagcatccacagttccctctgcgtaaattgaacggccacatacattg 14017529 Query: 451 tgctggaactcaaatga 467 || || ||||||||||| Sbjct: 14017530 tgttgaaactcaaatga 14017546 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 315 tcatctcatgttgccctccctcaggacattgatcatatcgtacaatttcttgtccgcccc 374 |||||||||||||||||| || ||||||| |||||||| || |||||||||| || || Sbjct: 14017292 tcatctcatgttgccctctcttaggacatcaatcatatcatataatttcttgttggcacc 14017351 Query: 375 agatcgtatct 385 |||| |||||| Sbjct: 14017352 agattgtatct 14017362
>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B05 Length = 117057 Score = 113 bits (57), Expect = 6e-22 Identities = 72/77 (93%) Strand = Plus / Plus Query: 391 tggagaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattg 450 |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 87108 tggagaaacagggcagcatccacagttccctctgcgtaaattgaacggccacatacattg 87167 Query: 451 tgctggaactcaaatga 467 || || ||||||||||| Sbjct: 87168 tgttgaaactcaaatga 87184 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 315 tcatctcatgttgccctccctcaggacattgatcatatcgtacaatttcttgtccgcccc 374 |||||||||||||||||| || ||||||| |||||||| || |||||||||| || || Sbjct: 86930 tcatctcatgttgccctctcttaggacatcaatcatatcatataatttcttgttggcacc 86989 Query: 375 agatcgtatct 385 |||| |||||| Sbjct: 86990 agattgtatct 87000
>dbj|AK102253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088H16, full insert sequence Length = 1559 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 980 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 921 Query: 454 tggaactcaaatgacactgtttcgtcaggcgaagtgagatggta 497 ||||| |||||||| || | || || || |||||||||||||| Sbjct: 920 tggaattcaaatgaaacactgtcatcgggagaagtgagatggta 877
>dbj|AK069529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A15, full insert sequence Length = 2225 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 898 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 839 Query: 454 tggaactcaaatgacactgtttcgtcaggcgaagtgagatggta 497 ||||| |||||||| || | || || || |||||||||||||| Sbjct: 838 tggaattcaaatgaaacactgtcatcgggagaagtgagatggta 795
>dbj|AK059346.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C01, full insert sequence Length = 1371 Score = 87.7 bits (44), Expect = 3e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 897 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 838 Query: 454 tggaactcaaatgacactgtttcgtcaggcgaagtgagatggta 497 ||||| |||||||| || | || || || |||||||||||||| Sbjct: 837 tggaattcaaatgaaacactgtcatcgggagaagtgagatggta 794
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 7644576 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 7644517 Query: 454 tggaactcaaatga 467 ||||| |||||||| Sbjct: 7644516 tggaattcaaatga 7644503
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 70714 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 70773 Query: 454 tggaactcaaatga 467 ||||| |||||||| Sbjct: 70774 tggaattcaaatga 70787
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 394 agaaacatggcagcatcaacagttccctctgcgtatattgaacggccacatacattgtgc 453 |||||||| || |||||||||| ||| || || ||||||||||||||||| ||||||||| Sbjct: 7642411 agaaacattgcggcatcaacagatccttcagcatatattgaacggccacagacattgtgc 7642352 Query: 454 tggaactcaaatga 467 ||||| |||||||| Sbjct: 7642351 tggaattcaaatga 7642338
>ref|NM_115852.2| Arabidopsis thaliana dihydrodipicolinate reductase AT3G59890 transcript variant AT3G59890.1 mRNA, complete cds Length = 1370 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 1024 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 965 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 964 gacacagttt 955
>ref|NM_202735.1| Arabidopsis thaliana dihydrodipicolinate reductase AT3G59890 transcript variant AT3G59890.2 mRNA, complete cds Length = 1446 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 1056 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 997 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 996 gacacagttt 987
>emb|BX824728.1|CNS0A6VN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1446 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 1056 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 997 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 996 gacacagttt 987
>emb|BX824150.1|CNS0A6TE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1338 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 990 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 931 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 930 gacacagttt 921
>emb|BX823659.1|CNS0A6MG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1316 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 986 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 927 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 926 gacacagttt 917
>gb|AY087505.1| Arabidopsis thaliana clone 36111 mRNA, complete sequence Length = 1322 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 1024 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 965 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 964 gacacagttt 955
>gb|BT002803.1| Arabidopsis thaliana clone RAFL14-78-L07 (R20209) At3g59890 mRNA, complete sequence Length = 1295 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 979 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 920 Query: 466 gacactgttt 475 ||||| |||| Sbjct: 919 gacacagttt 910
>emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F24G16 Length = 100906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactcaaat 465 ||||||||||| ||||| || |||||||| | || || |||||||||||||||||||| Sbjct: 57499 gcatcaacagtaccctcagcatatattgatcttccgcaaacattgtgctggaactcaaag 57558 Query: 466 gacac 470 ||||| Sbjct: 57559 gacac 57563
>ref|NM_129966.2| Arabidopsis thaliana dihydrodipicolinate reductase AT2G44040 mRNA, complete cds Length = 1293 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactc 461 ||||||||||| ||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 986 gcatcaacagtaccctcagcataaattgatcggccgcagacattgtgctggaactc 931
>gb|BT008540.1| Arabidopsis thaliana clone U51223 unknown protein (At2g44040) mRNA, complete cds Length = 1075 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactc 461 ||||||||||| ||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 953 gcatcaacagtaccctcagcataaattgatcggccgcagacattgtgctggaactc 898
>gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E13 map CIC10F02, CIC02E07, complete sequence Length = 109741 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactc 461 ||||||||||| ||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 52464 gcatcaacagtaccctcagcataaattgatcggccgcagacattgtgctggaactc 52519
>dbj|AK118845.1| Arabidopsis thaliana At2g44040 mRNA for unknown protein, complete cds, clone: RAFL21-17-I11 Length = 1294 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactc 461 ||||||||||| ||||| || || ||||| ||||| || ||||||||||||||||| Sbjct: 987 gcatcaacagtaccctcagcataaattgatcggccgcagacattgtgctggaactc 932
>gb|AY084299.1| Arabidopsis thaliana clone 10293 mRNA, complete sequence Length = 1295 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 406 gcatcaacagttccctctgcgtatattgaacggccacatacattgtgctggaactc 461 ||||||||||| ||||| || || ||||| | ||| || ||||||||||||||||| Sbjct: 987 gcatcaacagtaccctcagcataaattgatctgccgcagacattgtgctggaactc 932
>emb|BX248398.9| Human DNA sequence from clone RP6-137J22 on chromosome 1 Contains a novel gene, the gene for a novel protein similar to cyclophilin-LC (cyclophilin homolog overexpressed in liver cancer (chromosome 1 amplified sequence 2)) and a CpG island, complete sequence Length = 127263 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 113386 ttacatttgccttccatcattc 113407
>emb|AL954711.3| Human DNA sequence from clone RP11-666A1 on chromosome 1 Contains two novel pseudogenes, two novel genes, a profilin 1 (PFN1) pseudogene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene and three CpG islands, complete sequence Length = 172789 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 109504 ttacatttgccttccatcattc 109483
>emb|AL592492.10| Human DNA sequence from clone RP11-763B22 on chromosome 1 Contains a profilin (PFN1) pseudogene, three novel genes, two novel pseudogenes (FLJ39739), a cyclophilin-LC (COAS2) pseudogene, a pseudogene similar to part of kinase suppressor of ras (KSR), the 5' end of a myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3) pseudogene and two CpG islands, complete sequence Length = 158089 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 48744 ttacatttgccttccatcattc 48723
>emb|AL451058.16| Human DNA sequence from clone RP11-277L2 on chromosome 1 Contains the gene for cyclophilin-LC (COAS2), a novel gene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 79029 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 19705 ttacatttgccttccatcattc 19684
>emb|AL022240.8|HS328E19 Human DNA sequence from clone RP3-328E19 on chromosome 1q12-21.2 Contains the 5' end of a novel gene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a novel pseudogene, the 3' end of a novel gene and a CpG island, complete sequence Length = 97619 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 50611 ttacatttgccttccatcattc 50632
>emb|BX283067.15| Human DNA sequence from clone RP11-289I10 on chromosome 1, complete sequence Length = 57950 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 8319 ttacatttgccttccatcattc 8298
>gb|AC128674.3| Homo sapiens BAC clone RP11-1390M18 from UL, complete sequence Length = 202721 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 121210 ttacatttgccttccatcattc 121189
>gb|AC127384.4| Homo sapiens BAC clone RP11-1390A11 from UL, complete sequence Length = 202837 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 35 ttacatttgccttccatcattc 56 |||||||||||||||||||||| Sbjct: 123012 ttacatttgccttccatcattc 123033
>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4, complete sequence Length = 206525 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttatttc 120 |||||||||||||||||||||| Sbjct: 61322 ccaatttaaacatctttatttc 61343
>emb|BX005105.6| Zebrafish DNA sequence from clone DKEY-37M8 in linkage group 22, complete sequence Length = 171403 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 aaaataatacattttataagac 262 |||||||||||||||||||||| Sbjct: 103570 aaaataatacattttataagac 103549 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 aaaataatacattttataagac 262 |||||||||||||||||||||| Sbjct: 102901 aaaataatacattttataagac 102880 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 aaaataatacattttataagac 262 |||||||||||||||||||||| Sbjct: 102373 aaaataatacattttataagac 102352 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 aaaataatacattttataagac 262 |||||||||||||||||||||| Sbjct: 102106 aaaataatacattttataagac 102085
>emb|CR391921.18| Zebrafish DNA sequence from clone CH211-185O22 in linkage group 19, complete sequence Length = 132783 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 109453 ccaatttaaacatctttattt 109473
>emb|CR405715.16| Zebrafish DNA sequence from clone DKEY-47K20 in linkage group 18, complete sequence Length = 170849 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 114973 ccaatttaaacatctttattt 114993
>emb|CR388047.20| Zebrafish DNA sequence from clone DKEY-244D13, complete sequence Length = 223119 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 30793 ccaatttaaacatctttattt 30773
>emb|CR376757.10| Zebrafish DNA sequence from clone DKEY-204M11 in linkage group 24, complete sequence Length = 30083 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 11373 ccaatttaaacatctttattt 11393
>emb|AL645903.8| Mouse DNA sequence from clone RP23-179M4 on chromosome 11, complete sequence Length = 181669 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ctttgtgtggagaaacatggc 404 ||||||||||||||||||||| Sbjct: 44610 ctttgtgtggagaaacatggc 44590
>emb|CR751234.13| Zebrafish DNA sequence from clone DKEY-164M14 in linkage group 20 Contains the gene for a novel protein similar to vertebrate bromodomain containing 1 (BRD1), the gene for a novel protein similar to vertebrate asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) (ALG12), the gene for a novel protein similar to vertebrate solute carrier family 6 (neurotransmitter transporter, GABA), member 1 (SLC6A1), the gene for a novel protein similar to vertebrate zinc finger, BED domain containing 4 (ZBED4), the gene for a novel protein similar to vertebrate cysteine-rich with EGF-like domains 1 (CRELD1) (zgc:66383) and three CpG islands, complete sequence Length = 218596 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 189153 ccaatttaaacatctttattt 189173
>emb|BX004862.9| Zebrafish DNA sequence from clone DKEY-200M9 in linkage group 4 Contains the gene for a novel protein similar to vertebrate TAFA protein 5 (TAFA5) and a CpG island, complete sequence Length = 174359 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 118979 ccaatttaaacatctttattt 118959
>gb|AC092859.26| Pan troglodytes clone rp43-111m15, complete sequence Length = 175281 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tacatttgccttccatcattc 56 ||||||||||||||||||||| Sbjct: 5905 tacatttgccttccatcattc 5885
>emb|BX294119.5| Zebrafish DNA sequence from clone CH211-113D22 in linkage group 10, complete sequence Length = 167603 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 7072 ccaatttaaacatctttattt 7052
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 171 aataaaagaaacctaagattcaatt 195 ||||||||||||| ||||||||||| Sbjct: 8795 aataaaagaaaccaaagattcaatt 8819
>emb|BX957256.6| Zebrafish DNA sequence from clone DKEY-23N7 in linkage group 7, complete sequence Length = 227909 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ccaatttaaacatctttattt 119 ||||||||||||||||||||| Sbjct: 90232 ccaatttaaacatctttattt 90252
>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete sequence Length = 238278 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aatttaaacatctttatttc 120 |||||||||||||||||||| Sbjct: 70840 aatttaaacatctttatttc 70859
>gb|AC146508.3| Pan troglodytes BAC clone RP43-172A15 from 7, complete sequence Length = 208067 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 gaaaataatacattttataagacc 263 |||| ||||||||||||||||||| Sbjct: 185347 gaaattaatacattttataagacc 185324
>ref|XM_616125.2| PREDICTED: Bos taurus similar to centrosomal protein 1 (LOC536007), mRNA Length = 1673 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 tatttcgtccaaacggctct 134 |||||||||||||||||||| Sbjct: 188 tatttcgtccaaacggctct 169
>gb|AC160114.2| Mus musculus BAC clone RP24-70J8 from chromosome 13, complete sequence Length = 237699 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gtggagaaacatggcagcat 409 |||||||||||||||||||| Sbjct: 171238 gtggagaaacatggcagcat 171219
>gb|AC004743.1| Homo sapiens PAC clone RP4-807C15 from 7, complete sequence Length = 117752 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 gaaaataatacattttataagacc 263 |||| ||||||||||||||||||| Sbjct: 90168 gaaattaatacattttataagacc 90145
>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence Length = 234158 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gtggagaaacatggcagcat 409 |||||||||||||||||||| Sbjct: 30791 gtggagaaacatggcagcat 30810
>gb|AC146590.25| Medicago truncatula clone mth2-145p10, complete sequence Length = 130834 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tctataatatattgttcata 29 |||||||||||||||||||| Sbjct: 109545 tctataatatattgttcata 109564
>gb|AC153123.10| Medicago truncatula clone mte1-72m7, complete sequence Length = 105895 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tctataatatattgttcata 29 |||||||||||||||||||| Sbjct: 8073 tctataatatattgttcata 8092
>emb|AL445668.10| Human DNA sequence from clone RP11-234O23 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 168068 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaaagaaacctaagattcaa 193 |||||||||||||||||||| Sbjct: 75339 aaaagaaacctaagattcaa 75320
>emb|Z95334.1|SPAC20G8 S.pombe chromosome I cosmid c20G8 Length = 30200 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 aaagcccaatttaaacatctttat 117 |||||||||||||||| ||||||| Sbjct: 19468 aaagcccaatttaaacttctttat 19491
>emb|AL929545.8| Mouse DNA sequence from clone RP23-306I3 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 198821 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 tggaaaataatacattttataaga 261 |||||||||||||||||| ||||| Sbjct: 56908 tggaaaataatacattttctaaga 56885
>gb|AC107300.6| Homo sapiens 3 BAC RP11-516H5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161699 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aaaagaaacctaagattcaa 193 |||||||||||||||||||| Sbjct: 59465 aaaagaaacctaagattcaa 59446
>gb|AC087620.6| Homo sapiens chromosome 8, clone RP11-35G22, complete sequence Length = 154034 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ttgtgctggaactcaaatga 467 |||||||||||||||||||| Sbjct: 16643 ttgtgctggaactcaaatga 16624
>gb|AC090985.6| Homo sapiens chromosome 15, clone RP11-763K15, complete sequence Length = 186078 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 taattgtgaaatgcatgtcc 515 |||||||||||||||||||| Sbjct: 104840 taattgtgaaatgcatgtcc 104859
>gb|AC157724.2| Xenopus tropicalis clone ISB1-282F2, complete sequence Length = 79417 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tgctggaaaataatacattt 254 |||||||||||||||||||| Sbjct: 34957 tgctggaaaataatacattt 34938
>ref|NM_001018754.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC20G8.06), partial mRNA Length = 6303 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 aaagcccaatttaaacatctttat 117 |||||||||||||||| ||||||| Sbjct: 5410 aaagcccaatttaaacttctttat 5433
>gb|AC101790.5| Mus musculus chromosome 8, clone RP24-163M14, complete sequence Length = 202651 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gtggagaaacatggcagcat 409 |||||||||||||||||||| Sbjct: 112513 gtggagaaacatggcagcat 112494
>gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, complete sequence Length = 162609 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 taatgactagtaataaaaga 179 |||||||||||||||||||| Sbjct: 105074 taatgactagtaataaaaga 105055
>gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence Length = 94704 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gttaatgactagtaataaaa 177 |||||||||||||||||||| Sbjct: 93008 gttaatgactagtaataaaa 92989
>gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complete sequence Length = 182019 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 tggaaaataatacattttataaga 261 |||||||||||||||||| ||||| Sbjct: 97120 tggaaaataatacattttgtaaga 97097
>emb|BX000441.19| Mouse DNA sequence from clone RP23-163A24 on chromosome 2, complete sequence Length = 72207 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaacatggcagcatcaa 412 |||||||||||||||||||| Sbjct: 32901 gagaaacatggcagcatcaa 32920
>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence Length = 184753 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gaaacatggcagcatcaaca 414 |||||||||||||||||||| Sbjct: 54559 gaaacatggcagcatcaaca 54578
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agtaataaaagaaacctaag 187 |||||||||||||||||||| Sbjct: 303195 agtaataaaagaaacctaag 303214
>gb|BC083007.1| Xenopus laevis hypothetical LOC494836, mRNA (cDNA clone MGC:98807 IMAGE:3399676), complete cds Length = 2572 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gaaaataatacattttataa 259 |||||||||||||||||||| Sbjct: 2022 gaaaataatacattttataa 2003
>gb|AC005332.1|AC005332 Homo sapiens chromosome 17, clone hRPK.147_L_13, complete sequence Length = 216631 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tttataagaccaccatcaca 272 |||||||||||||||||||| Sbjct: 72654 tttataagaccaccatcaca 72673
>dbj|AP001331.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1153C10 Length = 207620 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ttgtgctggaactcaaatga 467 |||||||||||||||||||| Sbjct: 161384 ttgtgctggaactcaaatga 161365 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,200,095 Number of Sequences: 3902068 Number of extensions: 5200095 Number of successful extensions: 128619 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128384 Number of HSP's gapped (non-prelim): 232 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)