ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34f02 |
|---|---|
| Clone Library Name | barley_pub |
>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)| (Protein bronze-2) Length = 236 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/59 (42%), Positives = 36/59 (61%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMPGVERFVEYS 254 LD+ALG L +RA ER+ L L+D + P L W+ RF AHPA +P E+ V+++ Sbjct: 164 LDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFT 222
>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28| kDa cold-induced protein) Length = 236 Score = 53.9 bits (128), Expect = 2e-07 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMP 281 +D+ LG +LGW A++++ RL+D A+ P LAAW +RF A A G +P Sbjct: 165 VDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP 214
>GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.1.18)| (Auxin-induced protein PCNT107) Length = 221 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMPGVERFVEY 257 +DIAL + W A E EA+ PK AWA R +VA ++P + +E+ Sbjct: 155 VDIALIGYYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210
>GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC 2.5.1.18)| (Auxin-regulated protein parC) Length = 221 Score = 33.9 bits (76), Expect = 0.23 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMPGVERFVEY 257 +DIAL W A E EA+ PK AWA R +VA ++P + +E+ Sbjct: 155 VDIALIGFYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210
>GSTX6_SOYBN (P32110) Probable glutathione S-transferase (EC 2.5.1.18) (Heat| shock protein 26A) (G2-4) Length = 225 Score = 33.1 bits (74), Expect = 0.40 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMP 281 +DIA WI + IA L+L K P L W+ F HP V +P Sbjct: 156 VDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLP 205
>MCM8_MOUSE (Q9CWV1) DNA replication licensing factor MCM8 (Minichromosome| maintenance 8) Length = 833 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/37 (51%), Positives = 21/37 (56%) Frame = -3 Query: 396 SGPWRGSLNSGFSTRPRFLSWPRGRIGSAPTRRWRAR 286 SG +RG GF R RF SW RGR G + RWR R Sbjct: 2 SGAYRGR---GFG-RGRFQSWKRGRGGGNFSGRWRER 34
>ACCA_HAEI8 (Q4QND7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Frame = +2 Query: 146 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEPFXXXXXXXX 298 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIMQEPLGGAHRNYA 276 Query: 299 XXVGAEPIRPRGQLRNLGLVEKPE 370 +R + L L + K E Sbjct: 277 KIAENLKLRLKEDLAELDELSKEE 300
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 30.4 bits (67), Expect = 2.6 Identities = 29/100 (29%), Positives = 42/100 (42%) Frame = -2 Query: 397 IRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMPGVERFVEYSVKNDGVLKAASA 218 +R RIAE E K+P+L D P M V +F++YS G A Sbjct: 242 LREAFRIAE----QELKIPRLLEPEDVDVVDPDEKSIMTYVAQFLQYSKDAPGT--GEEA 295 Query: 217 NSK*TNCRGHLTVLDGVARISSLLAVGVNPSFFYEENELL 98 K + G LT+ ++ LL N ++F + N LL Sbjct: 296 QGKVKDAMGWLTLQK--EKLQKLLKDSENDTYFKKYNSLL 333
>ACCA_MANSM (Q65UI5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 321 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Frame = +2 Query: 146 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEPFXXXXXXXX 298 Q +TYS + E C + ST +G++ SRL+ ++D ++ EP Sbjct: 223 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELELIDNIVTEPLGGAHRQYD 282 Query: 299 XXVGAEPIRPRGQLRNLGLVEKPEFSD 379 A R L +L +++K D Sbjct: 283 EMAQALKQRILSDLEDLDILDKETLLD 309
>ADCY6_CANFA (P30804) Adenylate cyclase type 6 (EC 4.6.1.1) (Adenylate cyclase| type VI) (ATP pyrophosphate-lyase 6) (Ca(2+)-inhibitable adenylyl cyclase) Length = 1165 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 417 WGRTSAGSGPWRGSLNSGFSTRPRFLSWPRGRIGSAPTRRWRARC 283 WG + P RG+ SGF T PR++S R +PT RC Sbjct: 19 WGERNGQKRPRRGTRTSGFCT-PRYMSCLRDAQPPSPTPAAPPRC 62
>GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (EC 2.5.1.18)| Length = 231 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/67 (31%), Positives = 31/67 (46%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMPGVERFVEYSV 251 +D+AL W + ER + E P+LAAWA R +V +P E+ ++ Sbjct: 165 VDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFV- 221 Query: 250 KNDGVLK 230 GVLK Sbjct: 222 ---GVLK 225
>ACCA_NEIMB (Q9JRV8) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 128 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 271 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIMA (Q9JUF0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 128 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 271 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIG1 (Q5F8F5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +2 Query: 128 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 271 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_HAEIN (P43872) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 30.0 bits (66), Expect = 3.3 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Frame = +2 Query: 146 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEPFXXXXXXXX 298 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIVQEPLGGAHRSYL 276 Query: 299 XXVGAEPIRPRGQLRNLGLVEKPE 370 +R + L L + K E Sbjct: 277 EIAENLKLRLKEDLAELDELSKEE 300
>NU5C_MALAR (Q9MVL6) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (Fragment) Length = 707 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = +2 Query: 41 VIFFIFLITVLRGALLPLHQELVFFIKKGGVYTNSQQATYSCYAI 175 +I I +ITVL GA LPL Q+ IK+G Y+ Q Y A+ Sbjct: 293 LISLIGIITVLLGATLPLAQK---XIKRGLAYSTMSQLGYMMLAL 334
>ACCA_AZOSE (Q5P2J0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 322 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%) Frame = +2 Query: 146 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 271 Q ATYS + E C + S ++GI+ +RL++ ++D V++EP Sbjct: 218 QYATYSVISPEGCASILWKSAEKASEAAETMGITAARLKSLGLIDRVVNEP 268
>CSF1_MOUSE (P07141) Macrophage colony-stimulating factor 1 precursor (CSF-1)| (MCSF) Length = 552 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 307 HPAVAGAMPGVERFVEYSVKNDGVLKAASANS 212 HP+ G +PGVE +E S+ + VL+ AS + Sbjct: 280 HPSAGGPVPGVEDILESSLGTNWVLEEASGEA 311
>ASSY_RHILO (Q98E81) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 5.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +1 Query: 109 FLHKKRRGLHQQPAGYLFLLRHRALSSV 192 F+ K RG+++ P G + ++ HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGAILIVAHRAIESI 297
>ASSY_AGRT5 (Q8UC31) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 109 FLHKKRRGLHQQPAGYLFLLRHRALSSV 192 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUSU (Q8G376) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 109 FLHKKRRGLHQQPAGYLFLLRHRALSSV 192 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUME (Q8YEK8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 109 FLHKKRRGLHQQPAGYLFLLRHRALSSV 192 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_RHIME (Q92L73) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 405 Score = 29.3 bits (64), Expect = 5.7 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 109 FLHKKRRGLHQQPAGYLFLLRHRALSSV 192 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50| Length = 1375 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = +2 Query: 32 APLVIFFIFLITVLRGAL---LPLHQELVFFIKKGGVYTNSQQATYSCYAIEHCQVSTTV 202 A L ++ I+ T +R +L +P QE++ + K G + NS+ SC + + ++ Sbjct: 415 AELALWMIWNGTPVRDSLSTLIPKEQEVLQLLVKAGAHVNSEDDRTSCIVRQALEREDSI 474 Query: 203 RSL 211 R+L Sbjct: 475 RTL 477
>SERA_THASE (Q9S1H0) Selenate reductase alpha subunit precursor (EC 1.97.1.9)| (Selenate reductase molybdenum subunit) Length = 918 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -3 Query: 393 GPWRGSLNSGFSTRPRFLSWPRGRIGSAPTRRWR 292 G +G++ +S +P FL +P R+G R+W+ Sbjct: 114 GCQKGAVYCSWSKQPDFLKYPLKRVGERGERKWK 147
>CLRA_IDEDE (P60068) Chlorate reductase alpha subunit precursor (EC 1.97.1.1)| (Chlorate reductase molybdenum subunit) Length = 914 Score = 28.9 bits (63), Expect = 7.5 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = -3 Query: 393 GPWRGSLNSGFSTRPRFLSWPRGRIGSAPTRRWR 292 G +G++ +S +P + WP R+G R+W+ Sbjct: 110 GCQKGAVYCSWSKQPDHIKWPLKRVGERGERKWK 143
>MCM8_HUMAN (Q9UJA3) DNA replication licensing factor MCM8 (Minichromosome| maintenance 8) Length = 840 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = -3 Query: 396 SGPWRGSLNSGFSTRPRFLSWPRGRIGSAPTRRWRAR 286 +G +RG GF R RF SW RGR G + +WR R Sbjct: 2 NGEYRGR---GFG-RGRFQSWKRGRGGGNFSGKWRER 34
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +2 Query: 308 GAEPIRPRGQLRNLGLVEKPEFSDPLHGPDPAEVRPQSNVQVTDAVAAEVILPSAALD 481 GA+P + RGQL GLV + D + ++ + + + + A V+ A+LD Sbjct: 658 GADPTKVRGQLTEFGLVAEEYGGDTMF----VDISAKQGLNIESLLEAVVLTADASLD 711
>METE_RALSO (Q8XS05) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 776 Score = 28.9 bits (63), Expect = 7.5 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -2 Query: 361 LDEAKVPKLAAWADRFCAHPAVAGAMPGV-ERFVEYSVKNDGVLKAASA 218 LDE V K A R AH A+AG+ + R V ND V K A+A Sbjct: 351 LDELAVLKRAVIDGRDAAHAALAGSAAAIASRAASRRVHNDSVKKRAAA 399
>GSTXA_TOBAC (P25317) Probable glutathione S-transferase parA (EC 2.5.1.18)| (Auxin-regulated protein parA) (STR246C protein) Length = 220 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -2 Query: 430 LDIALGSHLGWIRAVERIAELRLLDEAKVPKLAAWADRFCAHPAVAGAMP 281 +D+AL W + E A + EA+ PKL WA +V+ ++P Sbjct: 154 VDVALVPFTSWFYSYETCANFSI--EAECPKLVVWAKTCMESESVSKSLP 201
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +2 Query: 308 GAEPIRPRGQLRNLGLVEKPEFSDPLHGPDPAEVRPQSNVQVTDAVAAEVILPSAALD 481 GA+P + RGQL GLV + D + ++ + + + + A V+ A+LD Sbjct: 645 GADPTKVRGQLTEYGLVAEEYGGDTMF----VDISAKQGLHIDSLLEAVVLTADASLD 698 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,099,959 Number of Sequences: 219361 Number of extensions: 1069657 Number of successful extensions: 3535 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3534 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
