ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V2R_RAT (Q00788) Vasopressin V2 receptor (Renal-type arginine va... 31 0.72
2V2R_MOUSE (O88721) Vasopressin V2 receptor (Renal-type arginine ... 31 0.72
3LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-bind... 29 3.6
4PYR1_FREDI (P18542) Phycobilisome 31.8 kDa linker polypeptide, p... 28 4.7
5XG_HUMAN (P55808) Glycoprotein Xg precursor (Protein PBDX) 28 6.1
6V2R_HUMAN (P30518) Vasopressin V2 receptor (Renal-type arginine ... 28 6.1
7SSG2_PEA (Q43093) Granule-bound starch synthase 2, chloroplast p... 28 7.9

>V2R_RAT (Q00788) Vasopressin V2 receptor (Renal-type arginine vasopressin|
           receptor) (Antidiuretic hormone receptor) (AVPR V2)
          Length = 371

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 207 HVAGSVLETADPSTTIVKLYLRTTLPCFLFRFWICFCFDRPIRKPP 70
           HV+ ++ +T   +  IV +Y+    P FL + W  +  + P+ +PP
Sbjct: 261 HVSAAMAKTVRMTLVIVIVYVLCWAPFFLVQLWAAWDPEAPLERPP 306



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>V2R_MOUSE (O88721) Vasopressin V2 receptor (Renal-type arginine vasopressin|
           receptor) (Antidiuretic hormone receptor) (AVPR V2)
          Length = 371

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 207 HVAGSVLETADPSTTIVKLYLRTTLPCFLFRFWICFCFDRPIRKPP 70
           HV+ ++ +T   +  IV +Y+    P FL + W  +  + P+ +PP
Sbjct: 261 HVSAAMAKTVRMTLVIVIVYVLCWAPFFLVQLWAAWDPEAPLERPP 306



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>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4|
           precursor (LTBP-4)
          Length = 1666

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 214 PPPCG-GLCFGDGRSFHHHCKTLFTNHPPLFPISFLD 107
           PPPCG G C     SFH  C   F +  P  P   +D
Sbjct: 761 PPPCGPGRCDNTAGSFHCACPAGFRSRGPGAPCQDVD 797



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>PYR1_FREDI (P18542) Phycobilisome 31.8 kDa linker polypeptide,|
           phycoerythrin-associated, rod
          Length = 285

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 24  YRSKTFVYIQNYNRTGGVSLLVYQNKNKSKNEIGNKGG 137
           YR+KTF  I  + R+  V L+ Y+  ++    I  +GG
Sbjct: 240 YRAKTFNNISKFRRSNQVFLVPYEKLSQEYQRIHQQGG 277



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>XG_HUMAN (P55808) Glycoprotein Xg precursor (Protein PBDX)|
          Length = 180

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 123 GNKGGWFVNKVLQWWWKDLPSPKQSPPHGGGTNGRS 230
           GN GG+F N V +   +  P P+  PP GGG  G S
Sbjct: 81  GNSGGYF-NDVDRDDGRYPPRPRPRPPAGGGGGGYS 115



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>V2R_HUMAN (P30518) Vasopressin V2 receptor (Renal-type arginine vasopressin|
           receptor) (Antidiuretic hormone receptor) (AVPR V2)
          Length = 371

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 207 HVAGSVLETADPSTTIVKLYLRTTLPCFLFRFWICFCFDRPIRKPP 70
           HV+ +V +T   +  IV +Y+    P FL + W  +  + P+   P
Sbjct: 261 HVSAAVAKTVRMTLVIVVVYVLCWAPFFLVQLWAAWDPEAPLEGAP 306



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>SSG2_PEA (Q43093) Granule-bound starch synthase 2, chloroplast precursor (EC|
           2.4.1.21) (Granule-bound starch synthase II) (GBSS-II)
          Length = 752

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 208 PCGGLCFGDG 179
           PCGG+C+GDG
Sbjct: 382 PCGGICYGDG 391


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,529,248
Number of Sequences: 219361
Number of extensions: 975880
Number of successful extensions: 2328
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2327
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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