ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
2dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
3gb|BT013357.1| Lycopersicon esculentum clone 135342R, mRNA sequence 52 0.002
4ref|XM_475724.1| Oryza sativa (japonica cultivar-group), predic... 48 0.026
5ref|XM_464776.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
6gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
9dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
10dbj|AK067487.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
11gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf... 46 0.10
12emb|X64876.1|BPFIMABC Bordetella pertussis fimbrial gene cluster... 44 0.40
13emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.40
14emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 44 0.40
15emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 44 0.40
16ref|XM_476112.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
17ref|XM_469049.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
18gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
19gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
21gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.6
22emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
23gb|AC024577.5| Homo sapiens chromosome 5 clone CTD-2346M20, comp... 42 1.6
24gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
25gb|AC010399.5|AC010399 Homo sapiens chromosome 5 clone CTD-2130K... 42 1.6
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell ... 42 1.6
29dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.6
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.6
31dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
32dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
33emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.6
34gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.6
35emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.6
36gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.6
37gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome ... 40 6.2
38ref|XM_467119.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
39ref|XM_506893.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.2
40ref|NM_191761.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
41ref|XM_472813.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
42gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete se... 40 6.2
43gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 6.2
44gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.2
45gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
46emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.2
47gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.2
48gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.2
49gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.2
50emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 6.2
51emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
52dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
53dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
54dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
56dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
57gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
58dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
59dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
60dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
61dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
62dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
63dbj|AK073462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
64dbj|AK067860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
65emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.2
66dbj|AK064996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
67dbj|AK058231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
68gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
69gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
70emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298... 40 6.2
71emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 6.2
72gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.2
73emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 6.2
74dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.2
75emb|AJ270166.1|AST270166 Archimonocelis staresoi partial 28S rRN... 40 6.2
76emb|AJ270164.1|ASP270164 Archimonocelidinae gen. sp. Stradbroke ... 40 6.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  149 bits (75), Expect = 9e-33
 Identities = 136/154 (88%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 215      ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggcctcccggtccac 274
                ||||||| |||||||||| ||||||||||| ||||||||||| || |||||| |||||||
Sbjct: 20742623 ctgctgcgtgcgcagctgctcgtagaacttgttgatgaactcctccgcctccaggtccac 20742682

                                                                            
Query: 275      cagcccgccctccagatcc--gccgc-gtcgtccctcagcgggaacggcgagtcggtgat 331
                ||||||| || |    |||  ||||| ||||||||| | |||||||||||||||||||||
Sbjct: 20742683 cagcccggccccggcgtcctcgccgccgtcgtccctgatcgggaacggcgagtcggtgat 20742742

                                                  
Query: 332      ccgcagctgcctcaccggcgccgggctgcggccg 365
                ||| ||||||||||||||||||||||||||||||
Sbjct: 20742743 ccggagctgcctcaccggcgccgggctgcggccg 20742776



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 411      gccgccgcaccgccgtcgcc 430
                ||||||||||||||||||||
Sbjct: 14473161 gccgccgcaccgccgtcgcc 14473142
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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0427B07
          Length = 172058

 Score =  149 bits (75), Expect = 9e-33
 Identities = 136/154 (88%), Gaps = 3/154 (1%)
 Strand = Plus / Plus

                                                                          
Query: 215    ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggcctcccggtccac 274
              ||||||| |||||||||| ||||||||||| ||||||||||| || |||||| |||||||
Sbjct: 165030 ctgctgcgtgcgcagctgctcgtagaacttgttgatgaactcctccgcctccaggtccac 165089

                                                                          
Query: 275    cagcccgccctccagatcc--gccgc-gtcgtccctcagcgggaacggcgagtcggtgat 331
              ||||||| || |    |||  ||||| ||||||||| | |||||||||||||||||||||
Sbjct: 165090 cagcccggccccggcgtcctcgccgccgtcgtccctgatcgggaacggcgagtcggtgat 165149

                                                
Query: 332    ccgcagctgcctcaccggcgccgggctgcggccg 365
              ||| ||||||||||||||||||||||||||||||
Sbjct: 165150 ccggagctgcctcaccggcgccgggctgcggccg 165183
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>gb|BT013357.1| Lycopersicon esculentum clone 135342R, mRNA sequence
          Length = 1088

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 307 tcagcgggaacggcgagtcggtgatccgcagctgcctcaccg 348
           ||||||| |||||||||||||| |||| || |||||||||||
Sbjct: 744 tcagcggaaacggcgagtcggtaatcctcaactgcctcaccg 703
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>ref|XM_475724.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 215 ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggc 262
           ||||||| |||||||||| |||| ||||  | ||||||||||||||||
Sbjct: 882 ctgctgcatgcgcagctgctcgtggaaccacatgatgaactcgtcggc 835



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 311 cgggaacggcgagtcggtgatccgcagctgcc 342
           ||||||||||||||| |||||||||| |||||
Sbjct: 774 cgggaacggcgagtccgtgatccgcacctgcc 743
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>ref|XM_464776.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 224 gcgcagctggtcgtagaacttcttgatgaactcgtcggcctcccggtccacc 275
           ||||||||| ||||||||   | |||||||||||||||||| || |||||||
Sbjct: 792 gcgcagctgctcgtagaagcgcctgatgaactcgtcggccttcctgtccacc 741
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>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07,
             complete sequence
          Length = 147122

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 215   ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggc 262
             ||||||| |||||||||| |||| ||||  | ||||||||||||||||
Sbjct: 67369 ctgctgcatgcgcagctgctcgtggaaccacatgatgaactcgtcggc 67322



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 311   cgggaacggcgagtcggtgatccgcagctgcc 342
             ||||||||||||||| |||||||||| |||||
Sbjct: 67261 cgggaacggcgagtccgtgatccgcacctgcc 67230
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 215      ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggc 262
                ||||||| |||||||||| |||| ||||  | ||||||||||||||||
Sbjct: 25655000 ctgctgcatgcgcagctgctcgtggaaccacatgatgaactcgtcggc 25654953



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 311      cgggaacggcgagtcggtgatccgcagctgcc 342
                ||||||||||||||| |||||||||| |||||
Sbjct: 25654892 cgggaacggcgagtccgtgatccgcacctgcc 25654861



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 225     cgcagctggtcgtagaacttcttgatgaa 253
               |||||||| ||||||||||| ||||||||
Sbjct: 6210682 cgcagctgctcgtagaacttgttgatgaa 6210710
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                   
Query: 224     gcgcagctggtcgtagaacttcttgatgaactcgtcggcctcccggtccacc 275
               ||||||||| ||||||||   | |||||||||||||||||| || |||||||
Sbjct: 7300476 gcgcagctgctcgtagaagcgcctgatgaactcgtcggccttcctgtccacc 7300425



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 406      cgagggccgccgcaccgccg 425
                ||||||||||||||||||||
Sbjct: 28169300 cgagggccgccgcaccgccg 28169319



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 420      ccgccgtcgccgacgacctc 439
                ||||||||||||||||||||
Sbjct: 27758370 ccgccgtcgccgacgacctc 27758389



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 248      gatgaactcgtcggcctcccggtccacc 275
                ||||||||||||||||| || |||||||
Sbjct: 26519884 gatgaactcgtcggccttcctgtccacc 26519911
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                 
Query: 224   gcgcagctggtcgtagaacttcttgatgaactcgtcggcctcccggtccacc 275
             ||||||||| ||||||||   | |||||||||||||||||| || |||||||
Sbjct: 76284 gcgcagctgctcgtagaagcgcctgatgaactcgtcggccttcctgtccacc 76233
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>dbj|AK067487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107G24, full
            insert sequence
          Length = 1255

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 215  ctgctgcctgcgcagctggtcgtagaacttcttgatgaactcgtcggc 262
            ||||||| |||||||||| |||| ||||  | ||||||||||||||||
Sbjct: 1012 ctgctgcatgcgcagctgctcgtggaaccacatgatgaactcgtcggc 965



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 311 cgggaacggcgagtcggtgatccgcagctgcc 342
           ||||||||||||||| |||||||||| |||||
Sbjct: 904 cgggaacggcgagtccgtgatccgcacctgcc 873
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>gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf gene, complete cds
          Length = 13285

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 414 gccgcaccgccgtcgccgacgacctcg 440
           ||||||||||| |||||||||||||||
Sbjct: 849 gccgcaccgccttcgccgacgacctcg 823
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>emb|X64876.1|BPFIMABC Bordetella pertussis fimbrial gene cluster fimA, fimB, fimC and fimD
            genes, fhaC gene and orfA, orfB and orfC DNA for
            hypothetical proteins
          Length = 9630

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 233  gtcgtagaacttcttgatgaactcgt 258
            ||||||||||||||||||| ||||||
Sbjct: 9095 gtcgtagaacttcttgatgtactcgt 9120
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 233   gtcgtagaacttcttgatgaactcgt 258
             ||||||||||||||||||| ||||||
Sbjct: 42066 gtcgtagaacttcttgatgtactcgt 42041
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 233    gtcgtagaacttcttgatgaactcgt 258
              ||||||||||||||||||| ||||||
Sbjct: 115445 gtcgtagaacttcttgatgtactcgt 115420
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 233    gtcgtagaacttcttgatgaactcgt 258
              ||||||||||||||||||| ||||||
Sbjct: 255101 gtcgtagaacttcttgatgtactcgt 255126
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>ref|XM_476112.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 225 cgcagctggtcgtagaacttcttgatgaa 253
           |||||||| ||||||||||| ||||||||
Sbjct: 698 cgcagctgctcgtagaacttgttgatgaa 670
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>ref|XM_469049.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1173

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 411 gccgccgcaccgccgtcgccg 431
           |||||||||||||||||||||
Sbjct: 145 gccgccgcaccgccgtcgccg 165
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>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0092N01, complete sequence
          Length = 161741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gccgccgcaccgccgtcgccg 431
             |||||||||||||||||||||
Sbjct: 46733 gccgccgcaccgccgtcgccg 46713
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>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
             complete sequence
          Length = 172647

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 225   cgcagctggtcgtagaacttcttgatgaa 253
             |||||||| ||||||||||| ||||||||
Sbjct: 41037 cgcagctgctcgtagaacttgttgatgaa 41065
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 411      gccgccgcaccgccgtcgccg 431
                |||||||||||||||||||||
Sbjct: 25150757 gccgccgcaccgccgtcgccg 25150737



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ccgccgcaccgccgtcgccg 431
                ||||||||||||||||||||
Sbjct: 13997310 ccgccgcaccgccgtcgccg 13997291
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 242     cttcttgatgaactcgtcggcctcc 266
               ||||||||||||| |||||||||||
Sbjct: 1548141 cttcttgatgaacgcgtcggcctcc 1548165



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     tggcggcggcgaggttctgc 218
               ||||||||||||||||||||
Sbjct: 2783744 tggcggcggcgaggttctgc 2783725
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>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 411   gccgccgcaccgccgtcgccg 431
             |||||||||||||||||||||
Sbjct: 11735 gccgccgcaccgccgtcgccg 11755
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>gb|AC024577.5| Homo sapiens chromosome 5 clone CTD-2346M20, complete sequence
          Length = 103428

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   ccggtccaccagcccgccctc 286
             |||||||||||||||||||||
Sbjct: 35160 ccggtccaccagcccgccctc 35140
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 405     gcgagggccgccgcaccgccg 425
               |||||||||||||||||||||
Sbjct: 4748146 gcgagggccgccgcaccgccg 4748126
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>gb|AC010399.5|AC010399 Homo sapiens chromosome 5 clone CTD-2130K17, complete sequence
          Length = 85391

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   ccggtccaccagcccgccctc 286
             |||||||||||||||||||||
Sbjct: 39883 ccggtccaccagcccgccctc 39863
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 411      gccgccgcaccgccgtcgccg 431
                |||||||||||||||||||||
Sbjct: 25130068 gccgccgcaccgccgtcgccg 25130088



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 40       ggttcacacttcacacctgg 59
                ||||||||||||||||||||
Sbjct: 26365618 ggttcacacttcacacctgg 26365637



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 421      cgccgtcgccgacgacctcg 440
                ||||||||||||||||||||
Sbjct: 23403727 cgccgtcgccgacgacctcg 23403746
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 411      gccgccgcaccgccgtcgccg 431
                |||||||||||||||||||||
Sbjct: 25242066 gccgccgcaccgccgtcgccg 25242046



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ccgccgcaccgccgtcgccg 431
                ||||||||||||||||||||
Sbjct: 13992285 ccgccgcaccgccgtcgccg 13992266
to top
>gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 131070

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    tggaacaaattactgtaaaac 77
             |||||||||||||||||||||
Sbjct: 73237 tggaacaaattactgtaaaac 73257
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 196     gggtggcggcggcgaggttct 216
               |||||||||||||||||||||
Sbjct: 1542074 gggtggcggcggcgaggttct 1542054
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 405     gcgagggccgccgcaccgccg 425
               |||||||||||||||||||||
Sbjct: 8229065 gcgagggccgccgcaccgccg 8229085
to top
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0502B12
          Length = 197160

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gccgccgcaccgccgtcgccg 431
             |||||||||||||||||||||
Sbjct: 32305 gccgccgcaccgccgtcgccg 32285
to top
>dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F12, full
           insert sequence
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 225 cgcagctggtcgtagaacttcttgatgaa 253
           |||||||| ||||||||||| ||||||||
Sbjct: 882 cgcagctgctcgtagaacttgttgatgaa 854
to top
>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
              sequence
          Length = 121821

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 411    gccgccgcaccgccgtcgccg 431
              |||||||||||||||||||||
Sbjct: 107419 gccgccgcaccgccgtcgccg 107399
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 186     ccgtactccggggtggcggcg 206
               |||||||||||||||||||||
Sbjct: 4492641 ccgtactccggggtggcggcg 4492661
to top
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
             complete sequence
          Length = 150187

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 411   gccgccgcaccgccgtcgccg 431
             |||||||||||||||||||||
Sbjct: 77495 gccgccgcaccgccgtcgccg 77515
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 196     gggtggcggcggcgaggttct 216
               |||||||||||||||||||||
Sbjct: 1218075 gggtggcggcggcgaggttct 1218055
to top
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ccgccgtcgccgacgacctc 439
             ||||||||||||||||||||
Sbjct: 95740 ccgccgtcgccgacgacctc 95721
to top
>ref|XM_467119.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1099

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 248 gatgaactcgtcggcctcccggtccacc 275
           ||||||||||||||||| || |||||||
Sbjct: 894 gatgaactcgtcggccttcctgtccacc 867
to top
>ref|XM_506893.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.37 mRNA
          Length = 1256

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 248  gatgaactcgtcggcctcccggtccacc 275
            ||||||||||||||||| || |||||||
Sbjct: 1048 gatgaactcgtcggccttcctgtccacc 1021
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>ref|NM_191761.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1386

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 420 ccgccgtcgccgacgacctc 439
           ||||||||||||||||||||
Sbjct: 869 ccgccgtcgccgacgacctc 888
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>ref|XM_472813.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 396

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 cgccgtcgccgacgacctcg 440
           ||||||||||||||||||||
Sbjct: 148 cgccgtcgccgacgacctcg 129
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>gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete sequence
          Length = 148548

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     caaattactgtaaaacacat 81
              ||||||||||||||||||||
Sbjct: 119918 caaattactgtaaaacacat 119937
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    cttcttgatgaactcgtcggcctc 265
              |||||||| |||||||||||||||
Sbjct: 436558 cttcttgaagaactcgtcggcctc 436581
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 422     gccgtcgccgacgacctcgt 441
               ||||||||||||||||||||
Sbjct: 3041445 gccgtcgccgacgacctcgt 3041426
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>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 411   gccgccgcaccgccgtcgccgacg 434
             |||||||| |||||||||||||||
Sbjct: 63030 gccgccgcgccgccgtcgccgacg 63007
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 181     cgtagccgtactccggggtg 200
               ||||||||||||||||||||
Sbjct: 1010472 cgtagccgtactccggggtg 1010453
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   ccgccgcaccgccgtcgccg 431
             ||||||||||||||||||||
Sbjct: 14172 ccgccgcaccgccgtcgccg 14191
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>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0022F22, from chromosome 3, complete sequence
          Length = 144268

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  ccgccgcaccgccgtcgccg 431
            ||||||||||||||||||||
Sbjct: 6989 ccgccgcaccgccgtcgccg 6970
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 276    agcccgccctccagatccgccgcg 299
              |||||||||||| |||||||||||
Sbjct: 210770 agcccgccctcccgatccgccgcg 210747
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       cacaagatcacaaacatata 21
               ||||||||||||||||||||
Sbjct: 2164117 cacaagatcacaaacatata 2164136
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>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
              complete sequence
          Length = 167988

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    cgccgtcgccgacgacctcg 440
              ||||||||||||||||||||
Sbjct: 121048 cgccgtcgccgacgacctcg 121067
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ccgccgcaccgccgtcgccg 431
                ||||||||||||||||||||
Sbjct: 22254292 ccgccgcaccgccgtcgccg 22254273
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 411     gccgccgcaccgccgtcgccgacg 434
               |||||||| |||||||||||||||
Sbjct: 7495071 gccgccgcgccgccgtcgccgacg 7495094
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      ccgccgtcgccgacgacctc 439
                ||||||||||||||||||||
Sbjct: 19376514 ccgccgtcgccgacgacctc 19376495
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 420      ccgccgtcgccgacgacctc 439
                ||||||||||||||||||||
Sbjct: 29816666 ccgccgtcgccgacgacctc 29816647
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0683B11
          Length = 155955

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ccgccgtcgccgacgacctc 439
             ||||||||||||||||||||
Sbjct: 60761 ccgccgtcgccgacgacctc 60742
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     cggggtggcggcggcgaggt 213
               ||||||||||||||||||||
Sbjct: 2324007 cggggtggcggcggcgaggt 2323988
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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_B06
          Length = 131956

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 248    gatgaactcgtcggcctcccggtccacc 275
              ||||||||||||||||| || |||||||
Sbjct: 119800 gatgaactcgtcggccttcctgtccacc 119827
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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 248   gatgaactcgtcggcctcccggtccacc 275
             ||||||||||||||||| || |||||||
Sbjct: 62265 gatgaactcgtcggccttcctgtccacc 62292
to top
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   gccgccgcaccgccgtcgcc 430
             ||||||||||||||||||||
Sbjct: 66335 gccgccgcaccgccgtcgcc 66316
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   ccgccgtcgccgacgacctc 439
             ||||||||||||||||||||
Sbjct: 43703 ccgccgtcgccgacgacctc 43722
to top
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1717_A09
          Length = 203132

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    cgagggccgccgcaccgccg 425
              ||||||||||||||||||||
Sbjct: 158947 cgagggccgccgcaccgccg 158966
to top
>dbj|AK073462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042E16, full
            insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 248  gatgaactcgtcggcctcccggtccacc 275
            ||||||||||||||||| || |||||||
Sbjct: 1048 gatgaactcgtcggccttcctgtccacc 1021
to top
>dbj|AK067860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G10, full
           insert sequence
          Length = 2138

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 420 ccgccgtcgccgacgacctc 439
           ||||||||||||||||||||
Sbjct: 259 ccgccgtcgccgacgacctc 240
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 433    cgacctcgttcagcagctgctcgt 456
              ||||||||||| ||||||||||||
Sbjct: 783875 cgacctcgttctgcagctgctcgt 783852
to top
>dbj|AK064996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D21, full
           insert sequence
          Length = 1755

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 412 ccgccgcaccgccgtcgccg 431
           ||||||||||||||||||||
Sbjct: 56  ccgccgcaccgccgtcgccg 75
to top
>dbj|AK058231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B12, full
           insert sequence
          Length = 1099

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 248 gatgaactcgtcggcctcccggtccacc 275
           ||||||||||||||||| || |||||||
Sbjct: 894 gatgaactcgtcggccttcctgtccacc 867
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 411     gccgccgcaccgccgtcgccgacg 434
               |||||||| |||||||||||||||
Sbjct: 7565157 gccgccgcgccgccgtcgccgacg 7565180
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 412      ccgccgcaccgccgtcgccg 431
                ||||||||||||||||||||
Sbjct: 22182637 ccgccgcaccgccgtcgccg 22182618
to top
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 109610

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ccgccgcaccgccgtcgccg 431
              ||||||||||||||||||||
Sbjct: 107462 ccgccgcaccgccgtcgccg 107481
to top
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
            complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   ggttcacacttcacacctgg 59
            ||||||||||||||||||||
Sbjct: 6251 ggttcacacttcacacctgg 6270
to top
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 376     acagcgcgggggacggcgtcgcca 399
               ||||||||| ||||||||||||||
Sbjct: 4771589 acagcgcggcggacggcgtcgcca 4771612
to top
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 248    gatgaactcgtcggcctcccggtccacc 275
              ||||||||||||||||| || |||||||
Sbjct: 225646 gatgaactcgtcggccttcctgtccacc 225673
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     gtcggcctcccggtccacca 276
               ||||||||||||||||||||
Sbjct: 2947441 gtcggcctcccggtccacca 2947460
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>emb|AJ270166.1|AST270166 Archimonocelis staresoi partial 28S rRNA gene
          Length = 1701

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 gcctgcgcagctggtcgtag 239
           ||||||||||||||||||||
Sbjct: 560 gcctgcgcagctggtcgtag 541
to top
>emb|AJ270164.1|ASP270164 Archimonocelidinae gen. sp. Stradbroke partial 28S rRNA gene
          Length = 1661

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 gcctgcgcagctggtcgtag 239
           ||||||||||||||||||||
Sbjct: 534 gcctgcgcagctggtcgtag 515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,170,928
Number of Sequences: 3902068
Number of extensions: 3170928
Number of successful extensions: 77434
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74127
Number of HSP's gapped (non-prelim): 3307
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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