ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34e04 |
|---|---|
| Clone Library Name | barley_pub |
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 35.4 bits (80), Expect = 0.081 Identities = 23/79 (29%), Positives = 35/79 (44%) Frame = -3 Query: 314 PTRAILTPSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSSRTC 135 PT+A T + PT P C ST T + TT + T+T + P ++ S +++ T Sbjct: 29 PTKATTTCAPPTKPTCKSTSTTTTTT----TTTTTTTTTTRAPPTKPTCKSTSTTTTTTR 84 Query: 134 RPRRGKTCMHMMMITIESR 78 P TC T +R Sbjct: 85 APPTKPTCKSTSTTTTTTR 103
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 33.1 bits (74), Expect = 0.40 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 293 PSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSSRT 138 P P PP S + P+ W TT + + TGSIPP + + +S T Sbjct: 507 PPPPPPPSSSMASSTPL-PWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGT 557
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -3 Query: 293 PSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSS 147 P P PP S + P+ W TT + + TGSIPP + + +S Sbjct: 507 PPPPPPPSSSMASSTPL-PWQQNTTTTTTSAGTGSIPPWQQQQAAAAAS 554
>KITH_EBV (P03177) Thymidine kinase (EC 2.7.1.21)| Length = 607 Score = 32.0 bits (71), Expect = 0.90 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 9/85 (10%) Frame = -3 Query: 416 RSQVATTATSGPAYPRRHRA-----PRGV*TRLQRQPSAPTRAILTPSAPTPPGCSSTC- 255 R+Q A T+ +G + RH + PRG QP AP P+APTP S C Sbjct: 85 RTQAAVTSNTGNSPGSRHTSCPFTLPRGA------QPPAPAHQ--KPTAPTPKPRSRECG 136 Query: 254 ---TCPIVSWM*ATTCSNENTSTGS 189 T SW T+C+ + S Sbjct: 137 PSKTPDPFSWFRKTSCTEGGADSTS 161
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = -3 Query: 320 SAPTRAILTPSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSSR 141 S+ T + T S+ T SS+ + S T+ ++ TST S P + T ++SSS Sbjct: 167 SSSTTSTTTSSSETTTSSSSSSSSSSTSTTSTTSTTSSTTSTSSSPSTTSSSTSASSSSE 226 Query: 140 T 138 T Sbjct: 227 T 227
>HMEN_DROVI (P09145) Segmentation polarity homeobox protein engrailed| Length = 584 Score = 31.2 bits (69), Expect = 1.5 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 11/90 (12%) Frame = -3 Query: 380 AYPRRHRAPRGV*TRLQRQPSAPTRAILTPSAP-TPPGCSSTCT---CPIVSWM*----- 228 AYPR H V +RL+R + A+L P+A T P + C VS + Sbjct: 292 AYPRIHEEL--VQSRLRRSAAGNPNAVLPPTAKLTEPSVEKSALGSLCKTVSQIGQAQST 349 Query: 227 --ATTCSNENTSTGSIPPCMHAETKSNSSS 144 TT S+ + S PP +A T S+SSS Sbjct: 350 TPVTTPSSRPSQLASPPPASNASTISSSSS 379
>RTKN_MOUSE (Q8C6B2) Rhotekin| Length = 564 Score = 30.4 bits (67), Expect = 2.6 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = -3 Query: 341 TRLQRQPSAPTRAILTPSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAET 162 TRL+ PS P A+ T P CS P+ +WM T + P H+ Sbjct: 474 TRLE--PSPPWLAMFTDQPALPSSCSPASVAPVPTWMQPLPWGRPRTFSLDAAPADHSLG 531 Query: 161 KSNS 150 S S Sbjct: 532 PSRS 535
>TRPD1_RALSO (Q8XVE7) Anthranilate phosphoribosyltransferase 1 (EC 2.4.2.18)| Length = 345 Score = 30.0 bits (66), Expect = 3.4 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +L+ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGEMSPVIASALIMGLRVKKETIGEI 57
>RUNX3_MOUSE (Q64131) Runt-related transcription factor 3 (Core-binding factor,| alpha 3 subunit) (CBF-alpha 3) (Acute myeloid leukemia 2 protein) (Oncogene AML-2) (Polyomavirus enhancer-binding protein 2 alpha C subunit) (PEBP2-alpha C) (PEA2-alpha C) (SL Length = 409 Score = 30.0 bits (66), Expect = 3.4 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = -3 Query: 413 SQVAT------TATSGPAYPRRHRAPRGV*TRLQRQPSAPTRAILTPSAPTPPGCSST 258 +QVAT GP PRRHR T+ R +TPS P+P G ST Sbjct: 162 TQVATYHRAIKVTVDGPREPRRHRQKIEDQTKAFPDRFGDLRMRVTPSTPSPRGSLST 219
>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3) (Antigen NY-CO-33) Length = 1077 Score = 30.0 bits (66), Expect = 3.4 Identities = 22/63 (34%), Positives = 30/63 (47%) Frame = -3 Query: 332 QRQPSAPTRAILTPSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSN 153 Q++ SAPT PTPP C + T P S +T+CS+ + H+ T S Sbjct: 150 QKESSAPT--------PTPPTCPVSTTGPTTSTP-STSCSSSTS---------HSSTTST 191 Query: 152 SSS 144 SSS Sbjct: 192 SSS 194
>YL54_CAEEL (P34434) Hypothetical protein F44E2.4| Length = 1283 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -3 Query: 341 TRLQRQPSAPT-RAILTPSAPTPPGCSSTCT 252 T + P APT + + PSAPTPP SS C+ Sbjct: 624 TPVTMPPRAPTAKPLPIPSAPTPPVASSKCS 654
>TRPD_BURS3 (Q39JZ6) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 343 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +++ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGDMSPVMAAAIITGLRVKKETIGEI 57
>TRPD_BURPS (Q63QH1) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 343 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +++ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGDMSPVMAAAIITGLRVKKETIGEI 57
>TRPD_BURP1 (Q3JNB1) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 343 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +++ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGDMSPVMAAAIITGLRVKKETIGEI 57
>TRPD_BURMA (Q62DC9) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 343 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +++ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGDMSPVMAAAIITGLRVKKETIGEI 57
>TRPD_BURCE (Q845X9) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 343 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 145 DELLDLVSACMQGGMDPVLVFSLLHVVAHIQETIGQV 255 DE+L L+ M+G M PV+ +++ + +ETIG++ Sbjct: 21 DEMLHLMRLIMRGDMSPVMAAAIITGLRVKKETIGEI 57
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 29.6 bits (65), Expect = 4.4 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Frame = -3 Query: 425 GAARSQVATTATSGPAYPRRHRAPRGV*TRLQRQPSAPTRA-ILTPSAPTPPGCSSTCTC 249 G R + T S P P + V T QP++PT+A +T PT P + T Sbjct: 538 GPCRVLLQTEIPSSPLLPPTGPSESTVPTLPMEQPTSPTKATTVTIEIPTTP--TEEATI 595 Query: 248 PIVSWM*ATTCSNENTSTGSIPP 180 P + T N + SIPP Sbjct: 596 PTETTTVPTEVINVSPKETSIPP 618
>PTPA2_GIBZE (Q4INW6) Serine/threonine-protein phosphatase 2A activator 2 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2) (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl phosphatase activator 2) Length = 432 Score = 29.3 bits (64), Expect = 5.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 422 AARSQVATTATSGPAYPRRHRAPRGV*TRLQRQPSAPTRAILTPSAPTPPGCSSTCT 252 A+ VA A + + R P+ + + PS PT TP+ PTPP SS T Sbjct: 9 ASSPGVAAPAAASSIPNLKDRLPKLEPRKRRSGPSNPTPIPETPALPTPPDTSSNWT 65
>FRE1_YEAST (P32791) Ferric reductase transmembrane component 1 precursor (EC| 1.16.1.7) (Ferric-chelate reductase 1) Length = 686 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -3 Query: 272 GCSS---TCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSSRTCRPRRGKTCMHM 102 GCSS +C C ++W+ GS+ C + +KSN + + + C + Sbjct: 39 GCSSKSKSCYCKNINWL------------GSVTACAYENSKSNKTLDSALMKLASQCSSI 86 Query: 101 MMITIE 84 + T+E Sbjct: 87 KVYTLE 92
>SMI1_ASHGO (Q75AQ9) KNR4/SMI1 homolog| Length = 657 Score = 29.3 bits (64), Expect = 5.8 Identities = 26/112 (23%), Positives = 40/112 (35%) Frame = -3 Query: 416 RSQVATTATSGPAYPRRHRAPRGV*TRLQRQPSAPTRAILTPSAPTPPGCSSTCTCPIVS 237 ++ ++ T+ PA P AP + PSA A P TPP + P V+ Sbjct: 418 QTDASSKGTTKPATPNPMTAPTVIRVSTPGSPSAAAEAPEPPKKATPPKAAKETKTPTVT 477 Query: 236 WM*ATTCSNENTSTGSIPPCMHAETKSNSSSRTCRPRRGKTCMHMMMITIES 81 +T S+ N T + ++ T R H M T+ S Sbjct: 478 -KESTPASDANVDT----------ELDSKNTETNEDTRATNTAHSMAPTVSS 518
>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein| Length = 143 Score = 29.3 bits (64), Expect = 5.8 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = -3 Query: 329 RQPSAPTRAILTPSAPTPPGCSSTCTCPI---VSWM*ATTCSNENTSTGSIPPCMHAETK 159 + P P + P P P C +TC CP+ + C + T PPC T Sbjct: 43 KSPCCPPKPCPCPP-PCPCPCPATCPCPLKPPCCPQKCSCCPKKCTCCPQPPPCCAQPTC 101 Query: 158 SNSSSRT 138 +S ++T Sbjct: 102 CSSENKT 108
>NHAC_BACPF (P27611) Na(+)/H(+) antiporter (Sodium/proton antiporter)| (Sodium/hydrogen antiporter) Length = 462 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +1 Query: 97 IIICMHVLPRLGRHVRDELLDLVSACMQG---GMDPVLVFSLLHVVAHIQETIGQV 255 +++C+ + GR++R DL SA + G G+ P+ + +L+ +V + G V Sbjct: 36 LVVCLLIAAVFGRYLRVGWNDLESAMIDGLKIGIKPIFILALVGIVIAVWMMSGTV 91
>K0776_HUMAN (O94874) Protein KIAA0776| Length = 794 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -2 Query: 258 MHLSDCLLDVSDYM**RKYKYGVHSTLHACGN*VQQFITYVPTETGQNMHA 106 +HL+ LL +++ HS LHA G V Q I ++ ++ ++ HA Sbjct: 686 LHLTSVLL----------FQFSTHSMLHAPGRCVPQIIAFLNSKIPEDQHA 726
>PSTA_DICDI (P11976) Prestalk protein precursor| Length = 1046 Score = 28.5 bits (62), Expect = 9.9 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = -3 Query: 281 TPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSSRTCRPRRGKTCMHM 102 TP GC+ C + S +T C++ PC ++ SNS+ C+H Sbjct: 910 TPIGCNDNNACTVDSCSNSTGCTHTPMKCDDNNPCT-IDSCSNSTG----------CVHT 958 Query: 101 MMITIESRFCT 69 M + FCT Sbjct: 959 PMNCDDGNFCT 969
>MUCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor| (Mu-protocadherin) (GP100) Length = 862 Score = 28.5 bits (62), Expect = 9.9 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Frame = -3 Query: 425 GAARSQVATTATSGPAYPRRHRAPRGV*TRLQR----QPSAPTRAILTPSAPTPPGCSST 258 G ++ V T S + P P G T+ + QP PT T S P P SST Sbjct: 551 GTSQPMVPTPGASTSSQPA---TPSGSSTQTPKPGTSQPMVPTPGASTSSQPATPSGSST 607 Query: 257 CT------CPIVSWM*ATTCSNENTSTGS 189 T P+V A+T S T +GS Sbjct: 608 QTPRPGTSQPMVPTPGASTSSQPATPSGS 636
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -3 Query: 296 TPSAPTPPGCSSTCTCPIVSWM*ATTCSNENTSTGSIPPCMHAETKSNSSS 144 TP+ T P S+T T P S TT + TST S P + + S+S Sbjct: 257 TPTTSTTPTTSTTSTAPTTS----TTSTTSTTSTISTAPTTSTTSSTFSTS 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,159,367 Number of Sequences: 219361 Number of extensions: 1279256 Number of successful extensions: 4596 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4584 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
