>ref|XM_478689.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score =  129 bits (65), Expect = 9e-27
 Identities = 118/135 (87%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                       
Query: 356 gggctcgatgacggcgtggatacgccggacccgacgttgcagttgttgctacttgtgacc 415
           |||||||| ||||||||||| ||||||||   |||||||  |||||||||||| | ||||
Sbjct: 965 gggctcgacgacggcgtggacacgccggagttgacgttgtggttgttgctactcgagacc 906

                                                                       
Query: 416 gtgctgctccactgc---aggttcgacgtgtctgacgccatctgcatcagcgccggcatg 472
           |||||||||||||||   ||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct: 905 gtgctgctccactgctgcaggttggacgcgtcggacgccatctgcatcagcgccggcacg 846

                          
Query: 473 tagtcgagctcgttg 487
           |||||||||| ||||
Sbjct: 845 tagtcgagctggttg 831

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  129 bits (65), Expect = 9e-27
 Identities = 118/135 (87%), Gaps = 3/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 356      gggctcgatgacggcgtggatacgccggacccgacgttgcagttgttgctacttgtgacc 415
                |||||||| ||||||||||| ||||||||   |||||||  |||||||||||| | ||||
Sbjct: 22240408 gggctcgacgacggcgtggacacgccggagttgacgttgtggttgttgctactcgagacc 22240467

                                                                            
Query: 416      gtgctgctccactgc---aggttcgacgtgtctgacgccatctgcatcagcgccggcatg 472
                |||||||||||||||   ||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct: 22240468 gtgctgctccactgctgcaggttggacgcgtcggacgccatctgcatcagcgccggcacg 22240527

                               
Query: 473      tagtcgagctcgttg 487
                |||||||||| ||||
Sbjct: 22240528 tagtcgagctggttg 22240542

>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0567H04
          Length = 181420

 Score =  129 bits (65), Expect = 9e-27
 Identities = 118/135 (87%), Gaps = 3/135 (2%)
 Strand = Plus / Plus

                                                                         
Query: 356   gggctcgatgacggcgtggatacgccggacccgacgttgcagttgttgctacttgtgacc 415
             |||||||| ||||||||||| ||||||||   |||||||  |||||||||||| | ||||
Sbjct: 45654 gggctcgacgacggcgtggacacgccggagttgacgttgtggttgttgctactcgagacc 45713

                                                                         
Query: 416   gtgctgctccactgc---aggttcgacgtgtctgacgccatctgcatcagcgccggcatg 472
             |||||||||||||||   ||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct: 45714 gtgctgctccactgctgcaggttggacgcgtcggacgccatctgcatcagcgccggcacg 45773

                            
Query: 473   tagtcgagctcgttg 487
             |||||||||| ||||
Sbjct: 45774 tagtcgagctggttg 45788

>emb|Y11415.1|OSMYB1355 O.sativa mRNA for myb factor, 1355 bp
          Length = 1355

 Score =  113 bits (57), Expect = 5e-22
 Identities = 116/135 (85%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 356  gggctcgatgacggcgtggatacgccggacccgacgttgcagttgttgctacttgtgacc 415
            ||||||||  |||||||||| ||||||||   |||||||  |||||||||||| |  |||
Sbjct: 1080 gggctcgacaacggcgtggacacgccggagttgacgttgtggttgttgctactcgaaacc 1021

                                                                        
Query: 416  gtgctgctccactgc---aggttcgacgtgtctgacgccatctgcatcagcgccggcatg 472
            |||||||||||||||   ||||| |||| ||| ||||||||||||||||||||||||| |
Sbjct: 1020 gtgctgctccactgctgcaggttggacgcgtcggacgccatctgcatcagcgccggcacg 961

                           
Query: 473  tagtcgagctcgttg 487
            |||||||||| ||||
Sbjct: 960  tagtcgagctggttg 946

>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete
             sequence
          Length = 193594

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 20    ctaacagtaaccagtgaccatgaact 45
             ||||||||||| ||||||||||||||
Sbjct: 48552 ctaacagtaactagtgaccatgaact 48577

>emb|AL672194.1| Mouse DNA sequence from clone RP23-73P3 on chromosome 13, complete
              sequence
          Length = 173598

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 20     ctaacagtaaccagtgaccatgaact 45
              ||||||||||| ||||||||||||||
Sbjct: 127957 ctaacagtaactagtgaccatgaact 127982

>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04,
             complete sequence
          Length = 88812

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   tcatatgcatgcatgttttgc 121
             |||||||||||||||||||||
Sbjct: 42104 tcatatgcatgcatgttttgc 42084

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 169      gcatgcatgcagggtggaatg 189
                |||||||||||||||||||||
Sbjct: 25761617 gcatgcatgcagggtggaatg 25761637



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      catcatcatatgcatgcatg 115
               ||||||||||||||||||||
Sbjct: 1149154 catcatcatatgcatgcatg 1149135

>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete
             sequence
          Length = 190834

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 169   gcatgcatgcagggtggaatg 189
             |||||||||||||||||||||
Sbjct: 83279 gcatgcatgcagggtggaatg 83259

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 260     tcgacgaacagcccggcggcg 280
               |||||||||||||||||||||
Sbjct: 2051591 tcgacgaacagcccggcggcg 2051571



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 321     aggctgccgttgaagccgag 340
               ||||||||||||||||||||
Sbjct: 4486351 aggctgccgttgaagccgag 4486370

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 454    ctgcatcagcgccggcatgtagtcg 478
              ||||||||||||||||| |||||||
Sbjct: 145769 ctgcatcagcgccggcacgtagtcg 145793

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 260    tcgacgaacagcccggcggcg 280
              |||||||||||||||||||||
Sbjct: 749161 tcgacgaacagcccggcggcg 749141

>gb|AC132308.4| Mus musculus BAC clone RP24-292O13 from chromosome 5, complete sequence
          Length = 184560

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 103   atatgcatgcatgttttgccc 123
             |||||||||||||||||||||
Sbjct: 43102 atatgcatgcatgttttgccc 43082

>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    tcatatgcatgcatgttttgc 121
              |||||||||||||||||||||
Sbjct: 103815 tcatatgcatgcatgttttgc 103835

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 101     tcatatgcatgcatgttttgc 121
               |||||||||||||||||||||
Sbjct: 2763778 tcatatgcatgcatgttttgc 2763758

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 169      gcatgcatgcagggtggaatg 189
                |||||||||||||||||||||
Sbjct: 25852926 gcatgcatgcagggtggaatg 25852946



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 96      catcatcatatgcatgcatg 115
               ||||||||||||||||||||
Sbjct: 1149152 catcatcatatgcatgcatg 1149133

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 268     cagcccggcggcgtcggcgctgatggcg 295
               ||||||||||||| |||||| |||||||
Sbjct: 3208694 cagcccggcggcggcggcgcagatggcg 3208667

>gb|AC119220.11| Mus musculus chromosome 1, clone RP24-201K16, complete sequence
          Length = 162827

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   atatgcatgcatgttttgcc 122
             ||||||||||||||||||||
Sbjct: 93936 atatgcatgcatgttttgcc 93955

>gb|AC151106.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNOa0281D22, complete sequence
          Length = 35282

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cccggcggcgtcggcgctga 290
             ||||||||||||||||||||
Sbjct: 17925 cccggcggcgtcggcgctga 17906

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 448     cgccatctgcatcagcgccg 467
               ||||||||||||||||||||
Sbjct: 1410666 cgccatctgcatcagcgccg 1410647

>gb|AC114411.24| Mus musculus chromosome 5, clone RP23-162F3, complete sequence
          Length = 208432

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tgcttctaacagtaaccagt 34
             ||||||||||||||||||||
Sbjct: 75502 tgcttctaacagtaaccagt 75483

>gb|AC107721.6| Mus musculus chromosome 5, clone RP23-317I8, complete sequence
          Length = 203227

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tgcttctaacagtaaccagt 34
              ||||||||||||||||||||
Sbjct: 193410 tgcttctaacagtaaccagt 193391

>gb|AE008827.1| Salmonella typhimurium LT2, section 131 of 220 of the complete genome
          Length = 20396

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  gcccggcggcgtcggcgctg 289
            ||||||||||||||||||||
Sbjct: 8106 gcccggcggcgtcggcgctg 8125

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     tgtcgacgaacagcccggcg 277
               ||||||||||||||||||||
Sbjct: 1527463 tgtcgacgaacagcccggcg 1527482

>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ccggcggcgtcggcgctgat 291
             ||||||||||||||||||||
Sbjct: 98110 ccggcggcgtcggcgctgat 98129

>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08,
             complete sequence
          Length = 100986

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    catcatcatatgcatgcatg 115
             ||||||||||||||||||||
Sbjct: 52858 catcatcatatgcatgcatg 52839

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     ggcggcgtcggcgctgatgg 293
               ||||||||||||||||||||
Sbjct: 1890518 ggcggcgtcggcgctgatgg 1890499

>gb|AC068716.8|AC068716 Homo sapiens chromosome 15 clone RP11-6L16 map 15q15, complete sequence
          Length = 159720

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     aaaatggtacaacaatcctg 70
              ||||||||||||||||||||
Sbjct: 136684 aaaatggtacaacaatcctg 136703

>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence
          Length = 177306

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gaccatgaactggataaaaa 54
              ||||||||||||||||||||
Sbjct: 114190 gaccatgaactggataaaaa 114171

>gb|AF020810.2|AF020810 Salmonella enterica VirK (virK), Mig-14 (mig-14), NxiA (nxiA), TctE
            (tctE), TctD (tctD), TctC (tctC), TctB (tctB), and TctA
            (tctA) genes, complete cds; and O360 (o360) gene, partial
            cds
          Length = 10313

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  gcccggcggcgtcggcgctg 289
            ||||||||||||||||||||
Sbjct: 6383 gcccggcggcgtcggcgctg 6402

>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     gcccggcggcgtcggcgctg 289
               ||||||||||||||||||||
Sbjct: 2750617 gcccggcggcgtcggcgctg 2750636

>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     gcccggcggcgtcggcgctg 289
               ||||||||||||||||||||
Sbjct: 2889473 gcccggcggcgtcggcgctg 2889492

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    gtacgtgatgaactgttgga 158
              ||||||||||||||||||||
Sbjct: 899816 gtacgtgatgaactgttgga 899797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,237,843
Number of Sequences: 3902068
Number of extensions: 3237843
Number of successful extensions: 64269
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63144
Number of HSP's gapped (non-prelim): 1121
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)