Clone Name | rbart34e01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in... | 32 | 1.4 | 2 | RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin r... | 31 | 1.8 | 3 | REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing pro... | 30 | 5.3 | 4 | ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resista... | 29 | 9.0 |
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>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 31.6 bits (70), Expect = 1.4 Identities = 33/135 (24%), Positives = 58/135 (42%) Frame = +3 Query: 54 SVSLSLIPMAITEITSSSRKS*NTSFCP*GRYSRLHRYQIFIHASQNMNLSRKDISRGHP 233 S S SL + +TSSS S +S ++ + +S + +S +S H Sbjct: 93 SSSASLTSSSSATLTSSSSASPTSSS---SSHALSSSSSSLVASSSSSGMSSSSLS--HS 147 Query: 234 SLLPALSSGLHASLPASSSRNRRSDATFHSNRCPCCIPSTITTSNWSFSHRPLATSNRWG 413 S +P+ SS H+S +S + + + R I + ++TS S P T+N Sbjct: 148 SSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNS 207 Query: 414 SRCISGPLVTTPLAS 458 S + +TP++S Sbjct: 208 SSSFTSSTSSTPISS 222
>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor| homolog) Length = 298 Score = 31.2 bits (69), Expect = 1.8 Identities = 26/97 (26%), Positives = 29/97 (29%), Gaps = 3/97 (3%) Frame = -1 Query: 521 EQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPPVTGGEWPMAEXXXXXXXXXXX 342 E EDEA EY A+ G GGDQWT + WP Sbjct: 217 EDEDEAGPQAEYGALP--APEYGMVGGDQWTT-----AQIPDAAWP--------GEGQAP 261 Query: 341 XXXXXXXXXXXXXXXXXXATGWEAGVQPA---AQGWE 240 GWEA P+ A GWE Sbjct: 262 ISAAPAAASWSDSAAAPADGGWEAAAPPSGAPAAGWE 298
>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1| (RalBP1-interacting protein 1) Length = 744 Score = 29.6 bits (65), Expect = 5.3 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 168 QIFIHASQNMNLSRKDISRGHPSLLPALSSGLHASLPASSSRNRRSDA 311 Q + A+ N+N + D + HP +LPA AS PASS R ++D+ Sbjct: 580 QFEVFAASNVNDEQDDEAEKHPEVLPAEK----ASDPASSLRVAKTDS 623
>ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resistance protein 2)| Length = 858 Score = 28.9 bits (63), Expect = 9.0 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = +3 Query: 150 SRLHRYQIFIHASQNMNLSRKDISRGHPSLLPALSSGLHASLPASSSRNRRSDATFHSNR 329 S H+ QI + + + RGH + LPA +S +L ASSS TF S R Sbjct: 127 SETHQKQIHVESIAPSLPKNAALERGHDTALPAGTSSNRCNLEASSSAR-----TFTSAR 181 Query: 330 CPCCIPSTITTS 365 + + TS Sbjct: 182 KASLVSAIFETS 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,420,755 Number of Sequences: 219361 Number of extensions: 1081855 Number of successful extensions: 2845 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2842 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)