ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in... 32 1.4
2RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin r... 31 1.8
3REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing pro... 30 5.3
4ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resista... 29 9.0

>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I|
          Length = 536

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 33/135 (24%), Positives = 58/135 (42%)
 Frame = +3

Query: 54  SVSLSLIPMAITEITSSSRKS*NTSFCP*GRYSRLHRYQIFIHASQNMNLSRKDISRGHP 233
           S S SL   +   +TSSS  S  +S      ++        + +S +  +S   +S  H 
Sbjct: 93  SSSASLTSSSSATLTSSSSASPTSSS---SSHALSSSSSSLVASSSSSGMSSSSLS--HS 147

Query: 234 SLLPALSSGLHASLPASSSRNRRSDATFHSNRCPCCIPSTITTSNWSFSHRPLATSNRWG 413
           S +P+ SS  H+S   +S  +  +     + R    I + ++TS  S    P  T+N   
Sbjct: 148 SSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNS 207

Query: 414 SRCISGPLVTTPLAS 458
           S   +    +TP++S
Sbjct: 208 SSSFTSSTSSTPISS 222



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>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor|
           homolog)
          Length = 298

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/97 (26%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
 Frame = -1

Query: 521 EQEDEAAGAPEYTAITDYXXXAGQWGGDQWTADAPAPPPVTGGEWPMAEXXXXXXXXXXX 342
           E EDEA    EY A+       G  GGDQWT        +    WP              
Sbjct: 217 EDEDEAGPQAEYGALP--APEYGMVGGDQWTT-----AQIPDAAWP--------GEGQAP 261

Query: 341 XXXXXXXXXXXXXXXXXXATGWEAGVQPA---AQGWE 240
                               GWEA   P+   A GWE
Sbjct: 262 ISAAPAAASWSDSAAAPADGGWEAAAPPSGAPAAGWE 298



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>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 744

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 168 QIFIHASQNMNLSRKDISRGHPSLLPALSSGLHASLPASSSRNRRSDA 311
           Q  + A+ N+N  + D +  HP +LPA      AS PASS R  ++D+
Sbjct: 580 QFEVFAASNVNDEQDDEAEKHPEVLPAEK----ASDPASSLRVAKTDS 623



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>ALR2_YEAST (P43553) Magnesium transporter ALR2 (Aluminum resistance protein 2)|
          Length = 858

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +3

Query: 150 SRLHRYQIFIHASQNMNLSRKDISRGHPSLLPALSSGLHASLPASSSRNRRSDATFHSNR 329
           S  H+ QI + +          + RGH + LPA +S    +L ASSS       TF S R
Sbjct: 127 SETHQKQIHVESIAPSLPKNAALERGHDTALPAGTSSNRCNLEASSSAR-----TFTSAR 181

Query: 330 CPCCIPSTITTS 365
               + +   TS
Sbjct: 182 KASLVSAIFETS 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,420,755
Number of Sequences: 219361
Number of extensions: 1081855
Number of successful extensions: 2845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2842
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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