ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11... 40 0.001
2APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11... 40 0.002
3APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1... 38 0.005
4APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 37 0.015
5APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1... 30 1.8
6IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2 24 6.4
7LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit ... 28 6.9
8LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit ... 28 6.9

>APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb)|
          Length = 251

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 20/36 (55%), Positives = 21/36 (58%)
 Frame = -1

Query: 399 DPAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGE 292
           DPAFRPLV+K              AHLKLSELGF E
Sbjct: 215 DPAFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 250



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>APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (APXa)|
          Length = 249

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/37 (54%), Positives = 22/37 (59%)
 Frame = -1

Query: 399 DPAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 289
           DPAFRPLV+K              AHLKLSELGF +A
Sbjct: 213 DPAFRPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 249



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>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -1

Query: 399 DPAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 289
           DP FRPLV+K              AH+KLSELGF +A
Sbjct: 213 DPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFADA 249



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>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/37 (51%), Positives = 20/37 (54%)
 Frame = -1

Query: 399 DPAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEA 289
           D  FRPLV+K              AHLKLSELGF EA
Sbjct: 213 DSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA 249



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>APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1.11)|
          Length = 291

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 399 DPAFRPLVDKXXXXXXXXXXXXXXAHLKLSELGFGEASEG 280
           DP+FR  VD               +H KLSELGF   S G
Sbjct: 211 DPSFRRYVDLYARDEDTFFKDYAESHKKLSELGFTPRSSG 250



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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 23.9 bits (50), Expect(2) = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 251 PQAPILNQQQPSDASPNPS 307
           PQAP     +P+DA P P+
Sbjct: 94  PQAPAEQTARPTDARPGPA 112



 Score = 22.3 bits (46), Expect(2) = 6.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 303 QVQRA*GVPRRNQQRTHPHPQHICPQVGGRP 395
           Q Q+  G P +   R  P P    P+VG  P
Sbjct: 152 QQQQRPGAPAQGGPRPGPKPGPKTPRVGNNP 182



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>LEU2_RHOPA (Q6ND69) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 469

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  NTPSTDRSNPNPD 135
           N P+TDRS PNPD
Sbjct: 67  NVPTTDRSKPNPD 79



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>LEU2_NITWN (Q3SNV3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 468

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  NTPSTDRSNPNPD 135
           N P+TDRS PNPD
Sbjct: 66  NVPTTDRSKPNPD 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,128,857
Number of Sequences: 219361
Number of extensions: 631704
Number of successful extensions: 1673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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