ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34d09 |
|---|---|
| Clone Library Name | barley_pub |
>PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC 2.7.11.1)| (p21-activated kinase-related protein) (Protein mushroom bodies tiny) Length = 639 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +1 Query: 166 PRAATTKGRKQTVQIKTAKQTNRRHQTPFVPSFHPHP 276 P T ++Q Q + AKQ ++Q P P HPHP Sbjct: 266 PPMYPTSHQQQQQQQQQAKQGGDQNQNPLHPHAHPHP 302
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 29.3 bits (64), Expect = 5.8 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Frame = +2 Query: 14 FVHMCIYIRTQAVAILILRIKEKKNEWRYASLHTSLRDTTSSIFH--QETKLSRERPQQR 187 ++H+ + + A++ + ++E + +LH S+ D+ SS+ Q S + + Sbjct: 208 WIHLTVQVHQTAISFFVDGLEENSTAFDTRTLHDSVTDSVSSVIQVGQSLNGSEQFVGRM 267 Query: 188 GENKLYKLKRPSKPTAVIKHRSFLHFIHIRSL*RDHGAPAGLRHPR 325 + +LY + ++ + F H +HI+ R G+ HPR Sbjct: 268 QDFRLYNVSLTNREILEVFSGDFPH-LHIQPHCRCPGS-----HPR 307
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 132 HHPSFIKKLN*AASGHNKGEKTNCTN*NGQANQPPSSNT 248 HH SF+ A+ G N+ N N N Q N P+S++ Sbjct: 254 HHSSFLSAAAAASGGTNQSANNNSNN-NNQGNSTPNSSS 291
>CCP3_MOUSE (Q9JKK0) Calcipressin-3 (Down syndrome candidate region 1-like| protein 2) (Myocyte-enriched calcineurin-interacting protein 3) (MCIP3) Length = 239 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +2 Query: 107 LHTSLRDTTSSIFHQ-ETKLSRERPQQRGENKLYKLKRPSKPTAVIKHR 250 LH T S + H E++ E + + K+ + +RP PTA + R Sbjct: 186 LHAGTESTPSVVVHVCESETEEEEDTKNPKQKITQTRRPEAPTAALSER 234
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 28.9 bits (63), Expect = 7.6 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%) Frame = +2 Query: 26 CIYIRTQAVAILILRIKEKKNEWRYASLHTSLRDTTSSIFHQETKLSRERPQQRGENKLY 205 C++ TQA L+ ++KE+K+ R L L H + +L E + Sbjct: 2779 CVHQDTQAHHALLQKLKEEKS--RVVDLQAMLEKVQQQALHSQQQLEAE-----AQKHCE 2831 Query: 206 KLKRPSKPTAVIKHRSFLHFIHIR------SL*RDHGAPAGLR------HPR 325 L+R + +A +K S + +H + SL R+ PA L+ HPR Sbjct: 2832 ALRREKEVSATLK--STVEALHTQKRELRCSLEREREKPAWLQAELEQSHPR 2881
>VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)| Length = 1876 Score = 28.9 bits (63), Expect = 7.6 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +2 Query: 101 ASLHTSLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLH 262 +S +S ++TSS + S E RGENKL++ ++PS+ + HR H Sbjct: 1752 SSSSSSKSNSTSS----SSSESNESALPRGENKLHRAQQPSRNCHMHLHRIVTH 1801
>DDPS4_ARATH (Q8GY03) Dehydrodolichyl diphosphate synthase 4 (EC 2.5.1.-)| (Dedol-PP synthase 4) Length = 289 Score = 28.5 bits (62), Expect = 9.9 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 229 WFAWPF*FVQFVFSPLLWP 173 +F W + +F FSP+LWP Sbjct: 246 FFLWQLAYTEFFFSPVLWP 264
>QUEA_SHISS (Q3Z504) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_SHIFL (P0A7G1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_SHIDS (Q32JF9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_SHIBS (Q325J6) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_ECOLI (P0A7F9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_ECOL6 (Q8FKC5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185
>QUEA_ECO57 (P0A7G0) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 356 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 116 SLRDTTSSIFHQETKLSRERPQQRGENKLYKLKRPSKPTAVIKHRSFLHF 265 S+ D +SI H +RP + + +LY+ KP AV + LHF Sbjct: 136 SVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHF 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,712,376 Number of Sequences: 219361 Number of extensions: 1038833 Number of successful extensions: 2759 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2759 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
