>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5
          Length = 348230

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 55     cattttaattttaagaataaag 76
              ||||||||||||||||||||||
Sbjct: 159176 cattttaattttaagaataaag 159155

>gb|L09673.1|N43GENOME Plasmid pNKH43 (from Xanthomonas maltophilia), complete genome
          Length = 1471

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 220  aagcaaaccaaccgccgtcatcaaac 245
            |||||||||||||||||||| |||||
Sbjct: 1441 aagcaaaccaaccgccgtcaccaaac 1466

>emb|Z77133.1|CEK03A11 Caenorhabditis elegans Cosmid K03A11, complete sequence
          Length = 31099

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     tttcaccaactttgttcacat 24
             |||||||||||||||||||||
Sbjct: 27680 tttcaccaactttgttcacat 27660

>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, a novel gene, the
              gene for a novel immunoglobulin domain containing protein
              and two CpG islands, complete sequence
          Length = 219893

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     ttgttcacatgtgtatatata 35
              |||||||||||||||||||||
Sbjct: 102586 ttgttcacatgtgtatatata 102566

>ref|NM_077769.2| Caenorhabditis elegans K03A11.4 (K03A11.4) mRNA, complete cds
          Length = 1995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   tttcaccaactttgttcacat 24
           |||||||||||||||||||||
Sbjct: 727 tttcaccaactttgttcacat 707

>gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4, complete sequence
          Length = 163636

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 18   ttcacatgtgtatatatattc 38
            |||||||||||||||||||||
Sbjct: 9658 ttcacatgtgtatatatattc 9638



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   ttcacatgtgtatatatattc 38
            |||||||||||||||||||||
Sbjct: 8665 ttcacatgtgtatatatattc 8685

>gb|AC129896.1| Ciona savignyi, clone XX-699357F19, complete sequence
          Length = 39512

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aaaacaaactgtacaaatta 211
             ||||||||||||||||||||
Sbjct: 22478 aaaacaaactgtacaaatta 22459

>ref|XM_658100.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5588.2), mRNA
          Length = 2409

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 gggctgagacacccccgcca 327
           ||||||||||||||||||||
Sbjct: 670 gggctgagacacccccgcca 651

>gb|AC124081.7| Mus musculus chromosome 3, clone RP24-384A12, complete sequence
          Length = 223177

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   atacaacatcatccatcttt 145
             ||||||||||||||||||||
Sbjct: 58092 atacaacatcatccatcttt 58111

>gb|AC166171.2| Mus musculus BAC clone RP23-136L14 from chromosome 16, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 192    aaaacaaactgtacaaattaaaac 215
              |||||||| |||||||||||||||
Sbjct: 100429 aaaacaaattgtacaaattaaaac 100452

>emb|AL589880.8| Human DNA sequence from clone RP11-111F16 on chromosome X Contains a
             eukaryotic translation initiation factor 4B (EIF4B)
             pseudogene and a novel pseudogene (PRO1843), complete
             sequence
          Length = 71509

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcacatgtgtatatatatt 37
             ||||||||||||||||||||
Sbjct: 49289 ttcacatgtgtatatatatt 49270

>emb|AL772195.4| Mouse DNA sequence from clone RP23-218C5 on chromosome 11 Contains the
             5' end of the Ugp2 gene for  UDP-glucose pyrophosphorylase
             2, two novel genes, a cytoplasmic dynein light chain 1
             (Dnclc1) pseudogene, a RAB5A member RAS oncogene family
             (Rab5a) pseudogene, a novel pseudogene and a CpG island,
             complete sequence
          Length = 173182

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ccattttaattttaagaata 73
             ||||||||||||||||||||
Sbjct: 12676 ccattttaattttaagaata 12695

>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence
          Length = 115904

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tttgttcacatgtgtatata 33
             ||||||||||||||||||||
Sbjct: 50194 tttgttcacatgtgtatata 50175

>dbj|AB226041.1| Aspergillus oryzae cDNA, contig sequence: AoEST2897
          Length = 1318

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 413 gccgtcgaagttgaggccct 432
           ||||||||||||||||||||
Sbjct: 850 gccgtcgaagttgaggccct 831

>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 413     gccgtcgaagttgaggccct 432
               ||||||||||||||||||||
Sbjct: 1745448 gccgtcgaagttgaggccct 1745467

>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete
             sequence
          Length = 122928

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   aaggggagaaaacaaactgt 203
             ||||||||||||||||||||
Sbjct: 39539 aaggggagaaaacaaactgt 39520

>dbj|AK134031.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830412P11 product:unclassifiable, full
            insert sequence
          Length = 2599

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ccattttaattttaagaata 73
            ||||||||||||||||||||
Sbjct: 1742 ccattttaattttaagaata 1723

>gb|AC159881.2| Mus musculus BAC clone RP24-493B12 from chromosome 9, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcacatgtgtatatatatt 37
             ||||||||||||||||||||
Sbjct: 79542 ttcacatgtgtatatatatt 79523

>gb|AC046131.35|AC046131 Homo sapiens 12 BAC RP11-847A19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 111131

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    aactttgttcacatgtgtatatat 34
             ||||||| ||||||||||||||||
Sbjct: 69968 aactttggtcacatgtgtatatat 69991

>dbj|AK037340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130008K04 product:unclassifiable, full
            insert sequence
          Length = 2437

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ccattttaattttaagaata 73
            ||||||||||||||||||||
Sbjct: 1672 ccattttaattttaagaata 1653

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 187      gggagaaaacaaactgtacaaatt 210
                ||||||||| ||||||||||||||
Sbjct: 33148083 gggagaaaaaaaactgtacaaatt 33148106

>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   gggagaaaacaaactgtacaaatt 210
             ||||||||| ||||||||||||||
Sbjct: 38475 gggagaaaaaaaactgtacaaatt 38498

>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   gggagaaaacaaactgtacaaatt 210
             ||||||||| ||||||||||||||
Sbjct: 30733 gggagaaaaaaaactgtacaaatt 30756

>emb|AL596116.14| Mouse DNA sequence from clone RP23-317F9 on chromosome 11, complete
             sequence
          Length = 217735

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   caaaggggagaaaacaaact 201
             ||||||||||||||||||||
Sbjct: 67288 caaaggggagaaaacaaact 67307


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,878,650
Number of Sequences: 3902068
Number of extensions: 4878650
Number of successful extensions: 135113
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135016
Number of HSP's gapped (non-prelim): 97
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)