ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 63 4e-10
214KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 62 9e-10
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 49 6e-06
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 36 0.052
5FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc recep... 29 6.3
6YL278_YEAST (Q05854) Putative transcriptional regulatory protein... 29 6.3
7C1TC_RAT (P27653) C-1-tetrahydrofolate synthase, cytoplasmic (C1... 28 8.2
8C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (... 28 8.2
9C1TC_HUMAN (P11586) C-1-tetrahydrofolate synthase, cytoplasmic (... 28 8.2
10KYK1_DICDI (P18160) Non-receptor tyrosine kinase spore lysis A (... 28 8.2

>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 28/45 (62%), Positives = 35/45 (77%)
 Frame = -1

Query: 453 DLDAAIRLCTAIKADVXGIHINLPIHLSLILNFCGKGVPTGFMCP 319
           DLDAA+ LCTAIKA+V GIH+N+P+ L+ ILN CG+  P  F CP
Sbjct: 84  DLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTCP 128



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 28/44 (63%), Positives = 36/44 (81%)
 Frame = -1

Query: 453 DLDAAIRLCTAIKADVXGIHINLPIHLSLILNFCGKGVPTGFMC 322
           +L+AA+ LCTAIKA++ G ++NLPI LSL+LN CGK VP GF C
Sbjct: 93  NLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = -1

Query: 453 DLDAAIRLCTAIKADVXGIHINLPIHLSLILNFCGKGVPTGFMCPT 316
           DLDAAI LCT I+  +  I+I LPI L ++++ CGK  P  F CP+
Sbjct: 300 DLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = -1

Query: 453 DLDAAIRLCTAIKADVXGIHINLPIHLSLILNFCGKGVPTGFMCP 319
           D++A + LC  ++A   GI +NL  +L LILN CG+  P+   CP
Sbjct: 37  DIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc receptor I precursor|
           (Fc-gamma RI) (FcRI) (IgG Fc receptor I) (CD64 antigen)
          Length = 374

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 76  TITTPTTSGHIPSQSKMQWPLAQATTQTFAKQYKTTKA 189
           T+T      H+P  S  QW L    TQT    Y+ T A
Sbjct: 38  TVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSA 75



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>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C|
          Length = 1341

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 15   INPLNDMHLSKFNN*EKIICHDNNSNNKRTHSIAK*NAMATSTSYDSNVCETIQNN*SKA 194
            I+ +N  H +  NN      +DNN+NN   ++ +  N    +   +SN   T  N+ +  
Sbjct: 910  ISSVNREHNNNHNN-----NNDNNNNNNNNNNNSNNNNNVNNNDNESNSRSTTNNSCNNG 964

Query: 195  NN*TY 209
            NN  Y
Sbjct: 965  NNSQY 969



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>C1TC_RAT (P27653) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -1

Query: 390 NLPI-----HLSLILNFCGKGVPTGFMCP 319
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886



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>C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -1

Query: 390 NLPI-----HLSLILNFCGKGVPTGFMCP 319
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886



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>C1TC_HUMAN (P11586) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -1

Query: 390 NLPI-----HLSLILNFCGKGVPTGFMCP 319
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFILP 886



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>KYK1_DICDI (P18160) Non-receptor tyrosine kinase spore lysis A (EC 2.7.10.2)|
           (Tyrosine-protein kinase 1)
          Length = 1584

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 75  HDNNSNNKRTHSIAK*NAMATSTSYDSNVCETIQNN*SKANN 200
           ++NN+NN   ++    N   +S + ++N+  T  NN S +NN
Sbjct: 461 NNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNN 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,933,340
Number of Sequences: 219361
Number of extensions: 948060
Number of successful extensions: 2420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2403
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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