ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein) 77 2e-14
2PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) ... 77 3e-14
3PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein) 77 3e-14
4PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) ... 76 6e-14
5PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein) 75 1e-13
6EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P re... 33 0.54
7EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P ... 30 2.7
8CS120_WHEAT (P46525) Cold-shock protein CS120 30 2.7
9HUTH_PSESM (Q87UM1) Histidine ammonia-lyase (EC 4.3.1.3) (Histid... 30 3.5
10MET4_YEAST (P32389) Transcriptional activator of sulfur metaboli... 30 3.5
11THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit... 30 4.6
12THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit... 30 4.6
13Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (... 30 4.6
14THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit... 29 6.0
15GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI... 29 6.0
16MURA_GEOMG (Q39YP9) UDP-N-acetylglucosamine 1-carboxyvinyltransf... 29 7.8
17PTSN_KLEOX (P17162) Nitrogen regulatory protein (Enzyme IIA-NTR)... 29 7.8
18PURL_SYNP7 (Q55041) Phosphoribosylformylglycinamidine synthase I... 29 7.8
19PURL_SYNP6 (Q5N1Y6) Phosphoribosylformylglycinamidine synthase I... 29 7.8
20GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation ... 29 7.8
21MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domai... 29 7.8

>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)|
          Length = 386

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 42/98 (42%), Positives = 64/98 (65%)
 Frame = -2

Query: 492 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313
           AS+ M D + +  F+AL  + NYLR+Q+++LTG T+ +D A++ NM+ L+ +G++LL K+
Sbjct: 294 ASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKS 353

Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199
           VS+           D   T EEAL RFAK LS+ +KLR
Sbjct: 354 VSK-----------DNPETYEEALKRFAKLLSDRKKLR 380



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>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber|
           protein)
          Length = 386

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 42/98 (42%), Positives = 62/98 (63%)
 Frame = -2

Query: 492 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313
           AS+ M D + + +F+A   + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199
           VS+           D   T EEAL RFAK LS+ +KLR
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)|
          Length = 386

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 42/98 (42%), Positives = 62/98 (63%)
 Frame = -2

Query: 492 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313
           AS+ M D + + +F+A   + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199
           VS+           D   T EEAL RFAK LS+ +KLR
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)|
          Length = 377

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 42/98 (42%), Positives = 61/98 (62%)
 Frame = -2

Query: 492 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313
           AS+ M D + + +F+A   + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K 
Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344

Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199
           VS+           D   T EEAL RFAK LS  +KLR
Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLR 371



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>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)|
          Length = 386

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 41/98 (41%), Positives = 61/98 (62%)
 Frame = -2

Query: 492 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 313
           AS+ M D + + +F+A   + NYLR+Q+++L G T+ +D A++ NME L+ +G+ LL K 
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 312 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 199
           VS+           D   T EEAL RFAK LS+ +KLR
Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380



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>EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor|
           Edg-5) (G-protein coupled receptor H218) (AGR16)
           (Endothelial differentiation G-protein coupled receptor
           5) (Sphingosine 1-phosphate receptor 2) (S1P2)
          Length = 352

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +2

Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 385
           +S+ L      A++L+  P T+S  PL  F R+    S F  I +SAS+FSL+AI+ E
Sbjct: 77  ASDLLAGVAFVANTLLSGPVTLSLTPLQWFAREG---SAF--ITLSASVFSLLAIAIE 129



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>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor|
           Edg-5) (Lysophospholipid receptor B2) (Endothelial
           differentiation G-protein coupled receptor 5)
           (Sphingosine 1-phosphate receptor 2) (S1P2)
          Length = 352

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/58 (37%), Positives = 34/58 (58%)
 Frame = +2

Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 385
           +S+ L      A++L+    T+S  P+  F R+   VS F  I +SAS+FSL+AI+ E
Sbjct: 77  ASDLLAGVAFVANTLLSGHVTLSLTPVQWFARE---VSAF--ITLSASVFSLLAIAIE 129



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>CS120_WHEAT (P46525) Cold-shock protein CS120|
          Length = 391

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
 Frame = -1

Query: 418 HPGRLAHGANVLGGYRHQREHGGAYWDR*ESAH-----------QDRIPGKH 296
           HPG   HGA   GG   Q+ H G        AH           +D++PG H
Sbjct: 38  HPGTATHGAPATGGAYGQQGHAGTTGTGLHGAHAGEKKGVMENIKDKLPGGH 89



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>HUTH_PSESM (Q87UM1) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)|
          Length = 515

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 313 GLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAE 444
           G+G+ I  D  + + VL    + RG     RVV+DA + L+NAE
Sbjct: 92  GVGQPISDDLVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAE 135



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>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4|
           (Methionine-requiring protein 4)
          Length = 672

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 339 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 181
           I  ++L   + RVN+ NG Y ++  AG + + +   A  ++   ++K+R+ N N+
Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407



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>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 548

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262
           EE  L+I   S+TG+   S  ++  K  +EA+  + +    K V  V++DN  +E   G 
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208

Query: 261 GTNEEALVR 235
           G  E  LVR
Sbjct: 209 GVEESELVR 217



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>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 548

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262
           EE  L+I   S+TG+   S  ++  K  +EA+  + +    K V  V++DN  +E   G 
Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208

Query: 261 GTNEEALVR 235
           G  E  LVR
Sbjct: 209 GVEESELVR 217



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>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)|
          Length = 335

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -2

Query: 450 EALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYE 277
           E L+I+ N +   DD   G    + +A    +E  I  G ++LTKTV  +  ++GMY+
Sbjct: 139 EFLKIDGNKIHTTDDFRMG----LALAKGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192



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>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)|
           (Chaperonin alpha subunit)
          Length = 549

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 435 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262
           EE  LRI   S+TG+   S  ++  K  ++A+  + +    K V  V++DN  +E   G 
Sbjct: 151 EETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208

Query: 261 GTNEEALVR 235
           G  E  LVR
Sbjct: 209 GVEESELVR 217



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>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
           (GDI-3)
          Length = 445

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 298 VYPGYGLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAEG 447
           +YP YGLGE  L     RL  ++GG     +   E +V + +VV + +EG
Sbjct: 225 LYPLYGLGE--LPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEG 272



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>MURA_GEOMG (Q39YP9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC|
           2.5.1.7) (Enoylpyruvate transferase)
           (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT)
          Length = 417

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
 Frame = -2

Query: 462 AVLFEALRIEENYLRIQDDSLTGQTSSVDIAT-----KENMEALIGIGKNLL------TK 316
           A L   +R+E  Y+  +   L G   + DIAT     +  M A +  G+ +L       +
Sbjct: 131 AALGADIRLEHGYVEAKAKKLKGARINFDIATVGGTEQLMMAAALAKGETILENAAREPE 190

Query: 315 TVSRVNIDNGMYETVDGAGTN 253
            +   +I N M   +DGAGT+
Sbjct: 191 IIDLADILNRMGARIDGAGTD 211



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>PTSN_KLEOX (P17162) Nitrogen regulatory protein (Enzyme IIA-NTR) [Includes:|
           Phosphotransferase enzyme IIA component (EC 2.7.1.-)
           (PTS system EIIA component)]
          Length = 162

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 369 TKENMEALIGIGKNLLTKTVSR----VNIDNGMYETVDGAGTNEEA 244
           TK ++  L  + K L  KT+ R       D  +YE +  AG+N EA
Sbjct: 117 TKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYEIITEAGSNNEA 162



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>PURL_SYNP7 (Q55041) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 777

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +1

Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGGDIH 381
           +L LLG P   AD+RL +G S    + H  V      GL  +I  D  +R+  +    IH
Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTV-----AGLPPRIDFDLERRVQAVCRLGIH 654

Query: 382 RG 387
           +G
Sbjct: 655 QG 656



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>PURL_SYNP6 (Q5N1Y6) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 777

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +1

Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGGDIH 381
           +L LLG P   AD+RL +G S    + H  V      GL  +I  D  +R+  +    IH
Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTV-----AGLPPRIDFDLERRVQAVCRLGIH 654

Query: 382 RG 387
           +G
Sbjct: 655 QG 656



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>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1|
          Length = 440

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 208 ALLGEPLGEADERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGG 372
           A L +P  E  ER+ + AS++         +YP YGLGE  L     RL  ++GG
Sbjct: 195 AYLKKPARETRERILLYASSI-AKFGKSPYIYPLYGLGE--LPQGFARLSAIYGG 246



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>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1229

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 189  GWFGAACAPRRASWRSGRAPLHWCQHRRRSHTSHCQCLPG 308
            GWFG ACA +R S   G A    C H     T  C+C PG
Sbjct: 931  GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,730,806
Number of Sequences: 219361
Number of extensions: 1321208
Number of successful extensions: 3979
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3974
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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