ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full ... 325 8e-86
2ref|XM_469071.1| Oryza sativa (japonica cultivar-group), mRNA 190 3e-45
3dbj|AK066745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
4dbj|AK120254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
5gb|BT016862.1| Zea mays clone Contig695 mRNA sequence 167 4e-38
6gb|BT017009.1| Zea mays clone EK07D2310G02.c mRNA sequence 159 1e-35
7gb|AY108697.1| Zea mays PCO126508 mRNA sequence 159 1e-35
8gb|AY112331.1| Zea mays CL362_2 mRNA sequence 147 4e-32
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 1e-22
10gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 115 1e-22
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
12dbj|AP001002.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.42
13gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence 42 1.7
14ref|XM_779501.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
15emb|AL117353.6|HSJ944F13 Human DNA sequence from clone RP5-944F1... 42 1.7
16gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Ca... 42 1.7
17gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromo... 42 1.7
18gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.26... 42 1.7
19ref|XM_791287.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.5
20dbj|AK158464.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 6.5
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
22gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosom... 40 6.5
23gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Can... 40 6.5
24ref|NM_001033477.1| Mus musculus gene model 1322, (NCBI) (Gm1322... 40 6.5
25dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
26emb|Z81107.1|CER07H5 Caenorhabditis elegans Cosmid R07H5, comple... 40 6.5
27emb|Z81049.1|CEC48D1 Caenorhabditis elegans Cosmid C48D1, comple... 40 6.5
28emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chro... 40 6.5
29emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chrom... 40 6.5
30emb|AL713912.8| Mouse DNA sequence from clone RP23-85C14 on chro... 40 6.5

>gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full insert mRNA
           sequence
          Length = 984

 Score =  325 bits (164), Expect = 8e-86
 Identities = 224/244 (91%)
 Strand = Plus / Minus

                                                                       
Query: 240 gcgctttcgaccatcccatgtggcatgcttggtacaccgtccataccgatgtctatcagg 299
           ||||||||||||||||||||| ||| ||||  |  ||| ||| ||| |||| ||||  | 
Sbjct: 720 gcgctttcgaccatcccatgttgcaggcttcttcaaccctccgtactgatggctattggt 661

                                                                       
Query: 300 gtactgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 359
            |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgatgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 601

                                                                       
Query: 360 caaccaatgtcgttccaggagaatatatgtccccagttcggaacccattgtccagtgtct 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caaccaatgtcgtcccaggagaatatatgtccccagttcggaacccattgtccagtgtct 541

                                                                       
Query: 420 ctgtaaccgcaacttcgattctctttgcagcactttctacgccaaggccatatttcaata 479
           ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 540 ctgtaaccgcggcttcgattctctttgcagcactttctacaccaaggccatatttcaata 481

               
Query: 480 gcat 483
           ||||
Sbjct: 480 gcat 477



 Score =  117 bits (59), Expect = 3e-23
 Identities = 162/193 (83%), Gaps = 15/193 (7%)
 Strand = Plus / Minus

                                                                       
Query: 34  cattccatccaggggcaaagggaatcatccccatttttctatccat---ggacacaattc 90
           ||||||| ||||| |||||||||| |||||||||||||||||||||   |||||||||||
Sbjct: 949 cattccagccaggtgcaaagggaaccatccccatttttctatccatcacggacacaattc 890

                                                                       
Query: 91  attcaatcgaggcacacgaaaatcattccgacgagcaatggaaagggaaaaggcgactca 150
           |||||||| ||||||||  ||||| |||| |||       |||||||||||| ||    |
Sbjct: 889 attcaatcaaggcacacacaaatctttccaacg------cgaaagggaaaagacg----a 840

                                                                       
Query: 151 tccgctaaaattcctgcactgaactacaagggcggaagcagacaaaca-gaaacaaaatc 209
           |||||| ||||||||||||  |||||||||||||||||||| ||||||  ||| ||||||
Sbjct: 839 tccgct-aaattcctgcacccaactacaagggcggaagcaggcaaacataaaaaaaaatc 781

                        
Query: 210 acgcaatccaggg 222
           || ||||||||||
Sbjct: 780 acacaatccaggg 768



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>ref|XM_469071.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1712

 Score =  190 bits (96), Expect = 3e-45
 Identities = 144/160 (90%)
 Strand = Plus / Minus

                                                                        
Query: 312  tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371
            |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1367 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1308

                                                                        
Query: 372  ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431
            |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||  
Sbjct: 1307 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 1248

                                                    
Query: 432  cttcgattctctttgcagcactttctacgccaaggccata 471
            |||| | ||||||||||||| ||||| | |||||||||||
Sbjct: 1247 cttcaactctctttgcagcattttcttctccaaggccata 1208



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>dbj|AK066745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084N20, full
           insert sequence
          Length = 839

 Score =  190 bits (96), Expect = 3e-45
 Identities = 144/160 (90%)
 Strand = Plus / Minus

                                                                       
Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371
           |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 577 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 518

                                                                       
Query: 372 ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431
           |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||  
Sbjct: 517 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 458

                                                   
Query: 432 cttcgattctctttgcagcactttctacgccaaggccata 471
           |||| | ||||||||||||| ||||| | |||||||||||
Sbjct: 457 cttcaactctctttgcagcattttcttctccaaggccata 418



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>dbj|AK120254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L02, full
            insert sequence
          Length = 1540

 Score =  174 bits (88), Expect = 2e-40
 Identities = 143/160 (89%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                        
Query: 312  tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371
            |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1199 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1140

                                                                        
Query: 372  ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431
            |||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||  
Sbjct: 1139 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 1080

                                                    
Query: 432  cttcgattctctttgcagcactttctacgccaaggccata 471
            |||| |  |||||||||||| ||||| | |||||||||||
Sbjct: 1079 cttc-aacctctttgcagcattttcttctccaaggccata 1041



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>gb|BT016862.1| Zea mays clone Contig695 mRNA sequence
          Length = 1573

 Score =  167 bits (84), Expect = 4e-38
 Identities = 138/156 (88%)
 Strand = Plus / Plus

                                                                       
Query: 328 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387
           |||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 344 cttcaggacttcttcccccatccgcttgcatccaaccaatgttgttccaggagaatatat 403

                                                                       
Query: 388 gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447
           |||||||||||||||||||| || |||||| || ||||| ||| |||| ||||| || ||
Sbjct: 404 gtccccagttcggaacccatggttcagtgtttcagtaactgcagcttcaattctgttcgc 463

                                               
Query: 448 agcactttctacgccaaggccatatttcaatagcat 483
           |||| ||||| | || ||||||||| ||||||||||
Sbjct: 464 agcattttcttctcctaggccatatctcaatagcat 499



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>gb|BT017009.1| Zea mays clone EK07D2310G02.c mRNA sequence
          Length = 1036

 Score =  159 bits (80), Expect = 1e-35
 Identities = 137/156 (87%)
 Strand = Plus / Minus

                                                                       
Query: 328 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387
           ||||| ||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct: 750 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaatatat 691

                                                                       
Query: 388 gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447
           |||||||||||||||||||| || |||||| |||||||| ||| |||| |||||| | ||
Sbjct: 690 gtccccagttcggaacccatggttcagtgtttctgtaactgcagcttcaattctcctcgc 631

                                               
Query: 448 agcactttctacgccaaggccatatttcaatagcat 483
           |||| ||||| | || |||||||||  |||||||||
Sbjct: 630 agcattttcttctcctaggccatatcgcaatagcat 595



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>gb|AY108697.1| Zea mays PCO126508 mRNA sequence
          Length = 1558

 Score =  159 bits (80), Expect = 1e-35
 Identities = 137/156 (87%)
 Strand = Plus / Minus

                                                                        
Query: 328  cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387
            ||||| ||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct: 1265 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaatatat 1206

                                                                        
Query: 388  gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447
            |||||||||||||||||||| || |||||| |||||||| ||| |||| |||||| | ||
Sbjct: 1205 gtccccagttcggaacccatggttcagtgtttctgtaactgcagcttcaattctcctcgc 1146

                                                
Query: 448  agcactttctacgccaaggccatatttcaatagcat 483
            |||| ||||| | || |||||||||  |||||||||
Sbjct: 1145 agcattttcttctcctaggccatatcgcaatagcat 1110



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>gb|AY112331.1| Zea mays CL362_2 mRNA sequence
          Length = 604

 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                       
Query: 350 cgcttgcatccaaccaatgtcgttccaggagaatatatgtccccagttcggaacccattg 409
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 303 cgcttgcatccaaccaatgttgttccaggagaatatatgtccccagttcggaacccatgg 244

                                                                       
Query: 410 tccagtgtctctgtaaccgcaacttcgattctctttgcagcactttctacgccaaggcca 469
           | |||||| || ||||| ||| |||| ||||| || |||||| ||||| | || ||||||
Sbjct: 243 ttcagtgtttcagtaactgcagcttcaattctgttcgcagcattttcttctcctaggcca 184

                         
Query: 470 tatttcaatagcat 483
           ||| ||||||||||
Sbjct: 183 tatctcaatagcat 170



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                            
Query: 370      cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429
                |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||
Sbjct: 25303239 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 25303180

                                                          
Query: 430      aacttcgattctctttgcagcactttctacgccaaggccata 471
                  |||| | ||||||||||||| ||||| | |||||||||||
Sbjct: 25303179 ggcttcaactctctttgcagcattttcttctccaaggccata 25303138



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 312      tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366
                |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 25303853 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25303799



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>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
              sequence
          Length = 152828

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 370    cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429
              |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||
Sbjct: 140121 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 140180

                                                        
Query: 430    aacttcgattctctttgcagcactttctacgccaaggccata 471
                |||| | ||||||||||||| ||||| | |||||||||||
Sbjct: 140181 ggcttcaactctctttgcagcattttcttctccaaggccata 140222



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                     
Query: 312    tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366
              |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 139507 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 139561



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                            
Query: 370      cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429
                |||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||
Sbjct: 25394548 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 25394489

                                                          
Query: 430      aacttcgattctctttgcagcactttctacgccaaggccata 471
                  |||| | ||||||||||||| ||||| | |||||||||||
Sbjct: 25394488 ggcttcaactctctttgcagcattttcttctccaaggccata 25394447



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                       
Query: 312      tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366
                |||||||||| | || ||||||||||||||||||||||||||||||||| |||||
Sbjct: 25395162 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25395108



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>dbj|AP001002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-678K21, complete
              sequences
          Length = 164380

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 64     ccatttttctatccatggacac 85
              ||||||||||||||||||||||
Sbjct: 101132 ccatttttctatccatggacac 101111



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>gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 123 gagcaatggaaagggaaaagg 143
           |||||||||||||||||||||
Sbjct: 247 gagcaatggaaagggaaaagg 227



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>ref|XM_779501.1| PREDICTED: Strongylocentrotus purpuratus similar to calcyphosphine
           2 (LOC579381), mRNA
          Length = 2154

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 agcagacaaacagaaacaaaa 207
           |||||||||||||||||||||
Sbjct: 159 agcagacaaacagaaacaaaa 179



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>emb|AL117353.6|HSJ944F13 Human DNA sequence from clone RP5-944F13 on chromosome 1p31.2-32.1
             Contains part of gene KIAA1365, complete sequence
          Length = 113515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   agacaaacagaaacaaaatca 210
             |||||||||||||||||||||
Sbjct: 22922 agacaaacagaaacaaaatca 22942



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>gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178388

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     ccatttttctatccatggaca 84
              |||||||||||||||||||||
Sbjct: 163497 ccatttttctatccatggaca 163517



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>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
              sequence
          Length = 204271

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     ccatttttctatccatggaca 84
              |||||||||||||||||||||
Sbjct: 145087 ccatttttctatccatggaca 145067



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>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence
          Length = 163685

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   aatggaaagggaaaaggcgac 147
             |||||||||||||||||||||
Sbjct: 62792 aatggaaagggaaaaggcgac 62812



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>ref|XM_791287.1| PREDICTED: Strongylocentrotus purpuratus similar to Nasopharyngeal
           epithelium specific protein 1 (LOC591735), partial mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 aagcagacaaacagaaacaa 205
           ||||||||||||||||||||
Sbjct: 425 aagcagacaaacagaaacaa 444



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>dbj|AK158464.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930118H22 product:hypothetical protein,
            full insert sequence
          Length = 1976

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ccatttttctatccatggac 83
            ||||||||||||||||||||
Sbjct: 1078 ccatttttctatccatggac 1059



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 47       ggcaaagggaatcatcccca 66
                ||||||||||||||||||||
Sbjct: 33012409 ggcaaagggaatcatcccca 33012390



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>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
             sequence
          Length = 206798

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   gcagacaaacagaaacaaaa 207
             ||||||||||||||||||||
Sbjct: 94934 gcagacaaacagaaacaaaa 94915



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>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   acaaacagaaacaaaatcac 211
             ||||||||||||||||||||
Sbjct: 96573 acaaacagaaacaaaatcac 96554



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>ref|NM_001033477.1| Mus musculus gene model 1322, (NCBI) (Gm1322), mRNA
          Length = 1976

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ccatttttctatccatggac 83
            ||||||||||||||||||||
Sbjct: 1078 ccatttttctatccatggac 1059



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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    ggcaaagggaatcatcccca 66
             ||||||||||||||||||||
Sbjct: 58349 ggcaaagggaatcatcccca 58330



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>emb|Z81107.1|CER07H5 Caenorhabditis elegans Cosmid R07H5, complete sequence
          Length = 33802

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aatcatccccatttttctat 75
             ||||||||||||||||||||
Sbjct: 14209 aatcatccccatttttctat 14228



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>emb|Z81049.1|CEC48D1 Caenorhabditis elegans Cosmid C48D1, complete sequence
          Length = 39908

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aatcatccccatttttctat 75
             ||||||||||||||||||||
Sbjct: 32683 aatcatccccatttttctat 32664



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>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete
              sequence
          Length = 189998

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     ccatttttctatccatggac 83
              ||||||||||||||||||||
Sbjct: 137663 ccatttttctatccatggac 137644



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>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete
              sequence
          Length = 236946

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    ccttcaggacttcctctcccattc 350
              ||||||| ||||||||||||||||
Sbjct: 125484 ccttcagtacttcctctcccattc 125507



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>emb|AL713912.8| Mouse DNA sequence from clone RP23-85C14 on chromosome 4, complete
             sequence
          Length = 46478

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    aacttccgttccattccatccagg 46
             |||| |||||||||||||||||||
Sbjct: 39175 aactcccgttccattccatccagg 39152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,448,600
Number of Sequences: 3902068
Number of extensions: 4448600
Number of successful extensions: 91071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90931
Number of HSP's gapped (non-prelim): 138
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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