Clone Name | rbart34c09 |
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Clone Library Name | barley_pub |
>gb|BT009017.1| Triticum aestivum clone wdk3c.pk006.l8:fis, full insert mRNA sequence Length = 984 Score = 325 bits (164), Expect = 8e-86 Identities = 224/244 (91%) Strand = Plus / Minus Query: 240 gcgctttcgaccatcccatgtggcatgcttggtacaccgtccataccgatgtctatcagg 299 ||||||||||||||||||||| ||| |||| | ||| ||| ||| |||| |||| | Sbjct: 720 gcgctttcgaccatcccatgttgcaggcttcttcaaccctccgtactgatggctattggt 661 Query: 300 gtactgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 359 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 ttgatgtttacttctgcgactccagagccttcaggacttcctctcccattcgcttgcatc 601 Query: 360 caaccaatgtcgttccaggagaatatatgtccccagttcggaacccattgtccagtgtct 419 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 caaccaatgtcgtcccaggagaatatatgtccccagttcggaacccattgtccagtgtct 541 Query: 420 ctgtaaccgcaacttcgattctctttgcagcactttctacgccaaggccatatttcaata 479 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 540 ctgtaaccgcggcttcgattctctttgcagcactttctacaccaaggccatatttcaata 481 Query: 480 gcat 483 |||| Sbjct: 480 gcat 477 Score = 117 bits (59), Expect = 3e-23 Identities = 162/193 (83%), Gaps = 15/193 (7%) Strand = Plus / Minus Query: 34 cattccatccaggggcaaagggaatcatccccatttttctatccat---ggacacaattc 90 ||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 949 cattccagccaggtgcaaagggaaccatccccatttttctatccatcacggacacaattc 890 Query: 91 attcaatcgaggcacacgaaaatcattccgacgagcaatggaaagggaaaaggcgactca 150 |||||||| |||||||| ||||| |||| ||| |||||||||||| || | Sbjct: 889 attcaatcaaggcacacacaaatctttccaacg------cgaaagggaaaagacg----a 840 Query: 151 tccgctaaaattcctgcactgaactacaagggcggaagcagacaaaca-gaaacaaaatc 209 |||||| |||||||||||| |||||||||||||||||||| |||||| ||| |||||| Sbjct: 839 tccgct-aaattcctgcacccaactacaagggcggaagcaggcaaacataaaaaaaaatc 781 Query: 210 acgcaatccaggg 222 || |||||||||| Sbjct: 780 acacaatccaggg 768
>ref|XM_469071.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 190 bits (96), Expect = 3e-45 Identities = 144/160 (90%) Strand = Plus / Minus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 1367 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1308 Query: 372 ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 1307 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 1248 Query: 432 cttcgattctctttgcagcactttctacgccaaggccata 471 |||| | ||||||||||||| ||||| | ||||||||||| Sbjct: 1247 cttcaactctctttgcagcattttcttctccaaggccata 1208
>dbj|AK066745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084N20, full insert sequence Length = 839 Score = 190 bits (96), Expect = 3e-45 Identities = 144/160 (90%) Strand = Plus / Minus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 577 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 518 Query: 372 ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 517 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 458 Query: 432 cttcgattctctttgcagcactttctacgccaaggccata 471 |||| | ||||||||||||| ||||| | ||||||||||| Sbjct: 457 cttcaactctctttgcagcattttcttctccaaggccata 418
>dbj|AK120254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L02, full insert sequence Length = 1540 Score = 174 bits (88), Expect = 2e-40 Identities = 143/160 (89%), Gaps = 1/160 (0%) Strand = Plus / Minus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaatgtcg 371 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 1199 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaaggtcg 1140 Query: 372 ttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgcaa 431 |||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 1139 ttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgcgg 1080 Query: 432 cttcgattctctttgcagcactttctacgccaaggccata 471 |||| | |||||||||||| ||||| | ||||||||||| Sbjct: 1079 cttc-aacctctttgcagcattttcttctccaaggccata 1041
>gb|BT016862.1| Zea mays clone Contig695 mRNA sequence Length = 1573 Score = 167 bits (84), Expect = 4e-38 Identities = 138/156 (88%) Strand = Plus / Plus Query: 328 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387 |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 344 cttcaggacttcttcccccatccgcttgcatccaaccaatgttgttccaggagaatatat 403 Query: 388 gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447 |||||||||||||||||||| || |||||| || ||||| ||| |||| ||||| || || Sbjct: 404 gtccccagttcggaacccatggttcagtgtttcagtaactgcagcttcaattctgttcgc 463 Query: 448 agcactttctacgccaaggccatatttcaatagcat 483 |||| ||||| | || ||||||||| |||||||||| Sbjct: 464 agcattttcttctcctaggccatatctcaatagcat 499
>gb|BT017009.1| Zea mays clone EK07D2310G02.c mRNA sequence Length = 1036 Score = 159 bits (80), Expect = 1e-35 Identities = 137/156 (87%) Strand = Plus / Minus Query: 328 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387 ||||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||| Sbjct: 750 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaatatat 691 Query: 388 gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447 |||||||||||||||||||| || |||||| |||||||| ||| |||| |||||| | || Sbjct: 690 gtccccagttcggaacccatggttcagtgtttctgtaactgcagcttcaattctcctcgc 631 Query: 448 agcactttctacgccaaggccatatttcaatagcat 483 |||| ||||| | || ||||||||| ||||||||| Sbjct: 630 agcattttcttctcctaggccatatcgcaatagcat 595
>gb|AY108697.1| Zea mays PCO126508 mRNA sequence Length = 1558 Score = 159 bits (80), Expect = 1e-35 Identities = 137/156 (87%) Strand = Plus / Minus Query: 328 cttcaggacttcctctcccattcgcttgcatccaaccaatgtcgttccaggagaatatat 387 ||||| ||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||| Sbjct: 1265 cttcaagacttcctcccccatccgcttgcatccaaccagtgttgttccaggagaatatat 1206 Query: 388 gtccccagttcggaacccattgtccagtgtctctgtaaccgcaacttcgattctctttgc 447 |||||||||||||||||||| || |||||| |||||||| ||| |||| |||||| | || Sbjct: 1205 gtccccagttcggaacccatggttcagtgtttctgtaactgcagcttcaattctcctcgc 1146 Query: 448 agcactttctacgccaaggccatatttcaatagcat 483 |||| ||||| | || ||||||||| ||||||||| Sbjct: 1145 agcattttcttctcctaggccatatcgcaatagcat 1110
>gb|AY112331.1| Zea mays CL362_2 mRNA sequence Length = 604 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Minus Query: 350 cgcttgcatccaaccaatgtcgttccaggagaatatatgtccccagttcggaacccattg 409 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 303 cgcttgcatccaaccaatgttgttccaggagaatatatgtccccagttcggaacccatgg 244 Query: 410 tccagtgtctctgtaaccgcaacttcgattctctttgcagcactttctacgccaaggcca 469 | |||||| || ||||| ||| |||| ||||| || |||||| ||||| | || |||||| Sbjct: 243 ttcagtgtttcagtaactgcagcttcaattctgttcgcagcattttcttctcctaggcca 184 Query: 470 tatttcaatagcat 483 ||| |||||||||| Sbjct: 183 tatctcaatagcat 170
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 370 cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 25303239 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 25303180 Query: 430 aacttcgattctctttgcagcactttctacgccaaggccata 471 |||| | ||||||||||||| ||||| | ||||||||||| Sbjct: 25303179 ggcttcaactctctttgcagcattttcttctccaaggccata 25303138 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| Sbjct: 25303853 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25303799
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Plus Query: 370 cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 140121 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 140180 Query: 430 aacttcgattctctttgcagcactttctacgccaaggccata 471 |||| | ||||||||||||| ||||| | ||||||||||| Sbjct: 140181 ggcttcaactctctttgcagcattttcttctccaaggccata 140222 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Plus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| Sbjct: 139507 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 139561
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 1e-22 Identities = 91/102 (89%) Strand = Plus / Minus Query: 370 cgttccaggagaatatatgtccccagttcggaacccattgtccagtgtctctgtaaccgc 429 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct: 25394548 cgttccaggagaatatatgtccccagttcggaacccgttgtttagtgtctctgtaactgc 25394489 Query: 430 aacttcgattctctttgcagcactttctacgccaaggccata 471 |||| | ||||||||||||| ||||| | ||||||||||| Sbjct: 25394488 ggcttcaactctctttgcagcattttcttctccaaggccata 25394447 Score = 77.8 bits (39), Expect = 3e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 312 tctgcgactccagagccttcaggacttcctctcccattcgcttgcatccaaccaa 366 |||||||||| | || ||||||||||||||||||||||||||||||||| ||||| Sbjct: 25395162 tctgcgactctacagtcttcaggacttcctctcccattcgcttgcatccgaccaa 25395108
>dbj|AP001002.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-678K21, complete sequences Length = 164380 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 ccatttttctatccatggacac 85 |||||||||||||||||||||| Sbjct: 101132 ccatttttctatccatggacac 101111
>gb|BT013694.1| Lycopersicon esculentum clone 132535R, mRNA sequence Length = 2264 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 gagcaatggaaagggaaaagg 143 ||||||||||||||||||||| Sbjct: 247 gagcaatggaaagggaaaagg 227
>ref|XM_779501.1| PREDICTED: Strongylocentrotus purpuratus similar to calcyphosphine 2 (LOC579381), mRNA Length = 2154 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 agcagacaaacagaaacaaaa 207 ||||||||||||||||||||| Sbjct: 159 agcagacaaacagaaacaaaa 179
>emb|AL117353.6|HSJ944F13 Human DNA sequence from clone RP5-944F13 on chromosome 1p31.2-32.1 Contains part of gene KIAA1365, complete sequence Length = 113515 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 agacaaacagaaacaaaatca 210 ||||||||||||||||||||| Sbjct: 22922 agacaaacagaaacaaaatca 22942
>gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178388 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ccatttttctatccatggaca 84 ||||||||||||||||||||| Sbjct: 163497 ccatttttctatccatggaca 163517
>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete sequence Length = 204271 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 ccatttttctatccatggaca 84 ||||||||||||||||||||| Sbjct: 145087 ccatttttctatccatggaca 145067
>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence Length = 163685 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 aatggaaagggaaaaggcgac 147 ||||||||||||||||||||| Sbjct: 62792 aatggaaagggaaaaggcgac 62812
>ref|XM_791287.1| PREDICTED: Strongylocentrotus purpuratus similar to Nasopharyngeal epithelium specific protein 1 (LOC591735), partial mRNA Length = 1158 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 aagcagacaaacagaaacaa 205 |||||||||||||||||||| Sbjct: 425 aagcagacaaacagaaacaa 444
>dbj|AK158464.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930118H22 product:hypothetical protein, full insert sequence Length = 1976 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ccatttttctatccatggac 83 |||||||||||||||||||| Sbjct: 1078 ccatttttctatccatggac 1059
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ggcaaagggaatcatcccca 66 |||||||||||||||||||| Sbjct: 33012409 ggcaaagggaatcatcccca 33012390
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gcagacaaacagaaacaaaa 207 |||||||||||||||||||| Sbjct: 94934 gcagacaaacagaaacaaaa 94915
>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147895 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 acaaacagaaacaaaatcac 211 |||||||||||||||||||| Sbjct: 96573 acaaacagaaacaaaatcac 96554
>ref|NM_001033477.1| Mus musculus gene model 1322, (NCBI) (Gm1322), mRNA Length = 1976 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ccatttttctatccatggac 83 |||||||||||||||||||| Sbjct: 1078 ccatttttctatccatggac 1059
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ggcaaagggaatcatcccca 66 |||||||||||||||||||| Sbjct: 58349 ggcaaagggaatcatcccca 58330
>emb|Z81107.1|CER07H5 Caenorhabditis elegans Cosmid R07H5, complete sequence Length = 33802 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aatcatccccatttttctat 75 |||||||||||||||||||| Sbjct: 14209 aatcatccccatttttctat 14228
>emb|Z81049.1|CEC48D1 Caenorhabditis elegans Cosmid C48D1, complete sequence Length = 39908 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aatcatccccatttttctat 75 |||||||||||||||||||| Sbjct: 32683 aatcatccccatttttctat 32664
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete sequence Length = 189998 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ccatttttctatccatggac 83 |||||||||||||||||||| Sbjct: 137663 ccatttttctatccatggac 137644
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete sequence Length = 236946 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 ccttcaggacttcctctcccattc 350 ||||||| |||||||||||||||| Sbjct: 125484 ccttcagtacttcctctcccattc 125507
>emb|AL713912.8| Mouse DNA sequence from clone RP23-85C14 on chromosome 4, complete sequence Length = 46478 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 aacttccgttccattccatccagg 46 |||| ||||||||||||||||||| Sbjct: 39175 aactcccgttccattccatccagg 39152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,448,600 Number of Sequences: 3902068 Number of extensions: 4448600 Number of successful extensions: 91071 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90931 Number of HSP's gapped (non-prelim): 138 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)