ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LDH_BACSU (P13714) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH) 29 4.0
2HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT... 28 8.8

>LDH_BACSU (P13714) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)|
          Length = 320

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 109 AFATYETCREIGVVCVCA 56
           ++ TYE C++  +VC+CA
Sbjct: 64  SYGTYEDCKDADIVCICA 81



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>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)|
           (Hedgehog acyltransferase) (Skinny hedgehog protein)
          Length = 499

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 177 PPRASPTASPFNLSHRHPWM 118
           PP A PT S    SH +PW+
Sbjct: 191 PPSAQPTPSAQGASHSYPWL 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,895,047
Number of Sequences: 219361
Number of extensions: 453684
Number of successful extensions: 1145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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