ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds Length = 1331 Score = 329 bits (166), Expect = 2e-87 Identities = 175/178 (98%) Strand = Plus / Minus Query: 1 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactggcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1228 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 1169 Query: 61 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 1109 Query: 121 ccatgggtgccgatggcttaaattaaatggagatgctgttggggatgcccttggcggt 178 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1108 ccatggttgccgatggcttaaattagatggagatgctgttggggatgcccttggcggt 1051
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 321 bits (162), Expect = 4e-85 Identities = 174/178 (97%) Strand = Plus / Minus Query: 1 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactggcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2799 ggaagcaaatctgctttatttattcggcttaaagagcaactgctgacatagtactgtcac 2740 Query: 61 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2739 agacacacactacaccaatctctcgacaagtttcgtacgtggcgaacgccctttattcat 2680 Query: 121 ccatgggtgccgatggcttaaattaaatggagatgctgttggggatgcccttggcggt 178 |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct: 2679 ccatggttgccgatggcttagattagatggagatgctgttggggatgcccttggcggt 2622
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggt 178 ||||||||||||||||||||||||||||| Sbjct: 2594 gagatgctgttggggatgcccttggcggt 2566
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggt 178 ||||||||||||||||||||||||||||| Sbjct: 47230 gagatgctgttggggatgcccttggcggt 47202 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 65812 atggagatgctgttggggatgcccatggcggt 65781
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggt 178 ||||||||||||||||||||||||||||| Sbjct: 27803100 gagatgctgttggggatgcccttggcggt 27803072 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 27821682 atggagatgctgttggggatgcccatggcggt 27821651 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 30026445 atggagatgctgttggggatgcccctggcgg 30026415 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Plus Query: 145 aaatggagatgctgttggggatgccctt 172 |||||| ||||||||||||||||||||| Sbjct: 14300020 aaatggtgatgctgttggggatgccctt 14300047 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 taaatggagatgctgttgg 162 ||||||||||||||||||| Sbjct: 28719078 taaatggagatgctgttgg 28719096
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||||||||||||||| Sbjct: 4658 atggagatgctgttggggatgcccttggc 4630
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgcccttggcggt 178 ||||||||||||||||||||||||||||| Sbjct: 27894424 gagatgctgttggggatgcccttggcggt 27894396 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 27913006 atggagatgctgttggggatgcccatggcggt 27912975 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 30117867 atggagatgctgttggggatgcccctggcgg 30117837 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Plus Query: 145 aaatggagatgctgttggggatgccctt 172 |||||| ||||||||||||||||||||| Sbjct: 14294995 aaatggtgatgctgttggggatgccctt 14295022 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 taaatggagatgctgttgg 162 ||||||||||||||||||| Sbjct: 28810402 taaatggagatgctgttgg 28810420
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||||||||||||||| Sbjct: 2591 atggagatgctgttggggatgcccttggc 2563
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Plus Query: 150 gagatgctgttggggatgcccttggcggt 178 ||||||||||||||||||||||||||||| Sbjct: 10793 gagatgctgttggggatgcccttggcggt 10821
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||||||||||||||| Sbjct: 2060 atggagatgctgttggggatgcccttggc 2032
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds Length = 1814 Score = 58.0 bits (29), Expect = 9e-06 Identities = 29/29 (100%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||||||||||||||| Sbjct: 1552 atggagatgctgttggggatgcccttggc 1524
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 2442 atggagatgctgttggggatgcccatggcggt 2411
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 2921 atggagatgctgttggggatgcccatggcggt 2890
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA sequence Length = 1020 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||||| ||||| Sbjct: 749 atggagatgctgttggggatgcccttagcggt 718
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 2915 atggagatgctgttggggatgcccatggcggt 2884
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence Length = 1560 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 1328 atggagatgctgttggggatgcccatggcggt 1297
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 2593 atggagatgctgttggggatgcccatggcggt 2562
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 2923 atggagatgctgttggggatgcccatggcggt 2892
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full insert sequence Length = 1726 Score = 56.0 bits (28), Expect = 4e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||| ||||||| Sbjct: 1493 atggagatgctgttggggatgcccatggcggt 1462
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 2609 atggagatgctgttggggatgcccctggcgg 2579
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 2691 atggagatgctgttggggatgcccctggcgg 2661
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 81306 atggagatgctgttggggatgcccctggcgg 81336
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcgg 177 |||||||||||||||||||||||| |||||| Sbjct: 2724 atggagatgctgttggggatgcccctggcgg 2694
>gb|AY720897.2| Triticum aestivum lipoxygenase gene, partial sequence Length = 934 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 153 atgctgttggggatgcccttggcggt 178 |||||||||||||||||||||||||| Sbjct: 1 atgctgttggggatgcccttggcggt 26
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgccc 170 |||||||||||||||||||||||||| Sbjct: 22970458 aaatggagatgctgttggggatgccc 22970433
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 52.0 bits (26), Expect = 6e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgcccttggcggt 178 |||||||||||||||| || |||||||||||||| Sbjct: 2620 aaatggagatgctgtttggaatgcccttggcggt 2587
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgccc 170 |||||||||||||||||||||||||| Sbjct: 22898649 aaatggagatgctgttggggatgccc 22898624
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgccc 170 |||||||||||||||||||||||||| Sbjct: 79735 aaatggagatgctgttggggatgccc 79710
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 52.0 bits (26), Expect = 6e-04 Identities = 26/26 (100%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgccc 170 |||||||||||||||||||||||||| Sbjct: 2914 aaatggagatgctgttggggatgccc 2889
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 |||||||||||||||||||||||| |||| Sbjct: 902 atggagatgctgttggggatgcccctggc 874
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene) Length = 2967 Score = 50.1 bits (25), Expect = 0.002 Identities = 25/25 (100%) Strand = Plus / Minus Query: 145 aaatggagatgctgttggggatgcc 169 ||||||||||||||||||||||||| Sbjct: 2772 aaatggagatgctgttggggatgcc 2748
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence Length = 810 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 792 atggagatgctgtttggaatgcccttggcggt 761
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence Length = 805 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 |||||||||||||| || |||||||||||||| Sbjct: 787 atggagatgctgtttggaatgcccttggcggt 756
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Plus Query: 145 aaatggagatgctgttggggatgccctt 172 |||||| ||||||||||||||||||||| Sbjct: 49249 aaatggtgatgctgttggggatgccctt 49276
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 48.1 bits (24), Expect = 0.009 Identities = 27/28 (96%) Strand = Plus / Plus Query: 145 aaatggagatgctgttggggatgccctt 172 |||||| ||||||||||||||||||||| Sbjct: 111408 aaatggtgatgctgttggggatgccctt 111435
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 48.1 bits (24), Expect = 0.009 Identities = 30/32 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggcggt 178 ||||||| |||||||||||||||| ||||||| Sbjct: 2760 atggagacgctgttggggatgcccatggcggt 2729
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence Length = 568 Score = 42.1 bits (21), Expect = 0.56 Identities = 27/29 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||| |||||| |||| Sbjct: 363 atggagatgctgttgggaatgcccatggc 335
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 42.1 bits (21), Expect = 0.56 Identities = 27/29 (93%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgcccttggc 175 ||||||||||||||||| |||||| |||| Sbjct: 2896 atggagatgctgttgggaatgcccatggc 2868
>gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, complete sequence Length = 227440 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 gtactggcacagacacacac 70 |||||||||||||||||||| Sbjct: 69288 gtactggcacagacacacac 69307
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2877 atggagatgctgtttgggatgccc 2854
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 137475 gctgttggggatgcccttgccggt 137452
>emb|AL078613.10|HSA354I12 Human DNA sequence from clone RP11-354I12 on chromosome 22 Contains an STS and GSSs, complete sequence Length = 60837 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cacagacacacactacacca 77 |||||||||||||||||||| Sbjct: 58806 cacagacacacactacacca 58825
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 20830414 gctgttggggatgcccttgccggt 20830391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 5276967 atggagatgctgtttgggatgccc 5276990
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 3270 atggagatgctgtttgggatgccc 3293
>dbj|AK073570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046P13, full insert sequence Length = 3010 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 2681 gctgttggggatgcccttgccggt 2658
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2876 atggagatgctgtttgggatgccc 2853
>gb|U76687.2|PVU76687 Phaseolus vulgaris lipoxygenase mRNA, complete cds Length = 3038 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ttaaatggagatgctgttggggat 166 |||||| ||||||||||||||||| Sbjct: 2871 ttaaatagagatgctgttggggat 2848
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||||| ||||||||| Sbjct: 2038 atggagatgctgtttgggatgccc 2015
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence Length = 1304 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||| ||||||||||| Sbjct: 138 atggagatgctgctggggatgccc 161
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence Length = 1439 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 atggagatgctgttggggatgccc 170 |||||||||||| ||||||||||| Sbjct: 1210 atggagatgctgctggggatgccc 1187
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttggcggt 178 ||||||||||||||||||| |||| Sbjct: 21140649 gctgttggggatgcccttgccggt 21140626
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cacagacacacactacacca 77 |||||||||||||||||||| Sbjct: 40251 cacagacacacactacacca 40232
>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence Length = 156486 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 tactggcacagacacacac 70 ||||||||||||||||||| Sbjct: 36248 tactggcacagacacacac 36266
>gb|AC158594.12| Mus musculus 10 BAC RP23-197I5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 218257 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 aagcaaatctgctttattt 21 ||||||||||||||||||| Sbjct: 167360 aagcaaatctgctttattt 167378
>gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing the bambi gene, complete sequence Length = 75688 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tactggcacagacacacac 70 ||||||||||||||||||| Sbjct: 49739 tactggcacagacacacac 49721
>gb|AC108821.6| Mus musculus chromosome 15, clone RP23-61D6, complete sequence Length = 216909 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 cagacacacactacaccaa 78 ||||||||||||||||||| Sbjct: 164161 cagacacacactacaccaa 164143
>gb|AC090437.62| Mus musculus strain C57BL/6J clone rp23-11f20 map 6, complete sequence Length = 227127 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 gcacagacacacactacac 75 ||||||||||||||||||| Sbjct: 215823 gcacagacacacactacac 215841
>ref|XM_843236.1| PREDICTED: Canis familiaris similar to testis-specific LRR protein (LOC606813), mRNA Length = 900 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gagatgctgttggggatgc 168 ||||||||||||||||||| Sbjct: 491 gagatgctgttggggatgc 473
>gb|AC123790.4| Mus musculus BAC clone RP24-287C19 from chromosome 1, complete sequence Length = 175833 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 ttattcggcttaaagagcaactg 42 ||||| ||||||||||||||||| Sbjct: 152015 ttattaggcttaaagagcaactg 151993
>gb|AE017158.1| Chlamydophila pneumoniae TW-183, section 2 of 4 of the complete genome Length = 300380 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 ccctttattcatccatggg 127 ||||||||||||||||||| Sbjct: 166699 ccctttattcatccatggg 166717
>gb|AC079597.13| Homo sapiens 12q BAC RP11-324H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156766 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 132 gatggcttaaattaaatggagat 154 |||||||||||||||||| |||| Sbjct: 47430 gatggcttaaattaaatgaagat 47408
>gb|AC153523.7| Mus musculus 10 BAC RP23-463C2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200141 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aagcaaatctgctttattt 21 ||||||||||||||||||| Sbjct: 152708 aagcaaatctgctttattt 152690
>gb|AC125606.2| Homo sapiens 12 BAC RP11-312A14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 32505 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 catagtactggcacagacacaca 69 ||||||||||| ||||||||||| Sbjct: 26609 catagtactggtacagacacaca 26587
>gb|DQ378287.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid 42I6, complete sequence Length = 39292 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 gctgttggggatgcccttg 173 ||||||||||||||||||| Sbjct: 38908 gctgttggggatgcccttg 38890
>gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, complete sequence Length = 134349 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 catagtactggcacagacacaca 69 ||||||||||||||| ||||||| Sbjct: 78016 catagtactggcacaaacacaca 78038
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 ccctttattcatccatggg 127 ||||||||||||||||||| Sbjct: 371135 ccctttattcatccatggg 371117
>gb|AC160945.5| Mus musculus 10 BAC RP24-187J13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168109 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 151 agatgctgttggggatgcc 169 ||||||||||||||||||| Sbjct: 72023 agatgctgttggggatgcc 72005
>emb|BX323060.5| Zebrafish DNA sequence from clone DKEY-27K4 in linkage group 7, complete sequence Length = 251050 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 ggcttaaattaaatggaga 153 ||||||||||||||||||| Sbjct: 140455 ggcttaaattaaatggaga 140473
>gb|AC012593.8| Homo sapiens BAC clone RP11-511B24 from 2, complete sequence Length = 166074 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 ctttattcatccatgggtg 129 ||||||||||||||||||| Sbjct: 3701 ctttattcatccatgggtg 3683
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 taaatggagatgctgttgg 162 ||||||||||||||||||| Sbjct: 26059 taaatggagatgctgttgg 26077
>gb|AC008524.6|AC008524 Homo sapiens chromosome 5 clone CTC-466O6, complete sequence Length = 154061 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 catagtactggcacagacacaca 69 ||||||||||||||| ||||||| Sbjct: 144065 catagtactggcacaaacacaca 144043
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 ccctttattcatccatggg 127 ||||||||||||||||||| Sbjct: 470061 ccctttattcatccatggg 470079
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 109 ccctttattcatccatggg 127 ||||||||||||||||||| Sbjct: 469771 ccctttattcatccatggg 469789
>dbj|AK107810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-E12, full insert sequence Length = 747 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 taaatggagatgctgttgg 162 ||||||||||||||||||| Sbjct: 661 taaatggagatgctgttgg 679
>emb|BX649525.14| Zebrafish DNA sequence from clone CH211-85E10 in linkage group 22, complete sequence Length = 180584 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 aaatctgctttatttattc 25 ||||||||||||||||||| Sbjct: 33445 aaatctgctttatttattc 33463
>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 279677 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 agatgctgttggggatgcc 169 ||||||||||||||||||| Sbjct: 5128 agatgctgttggggatgcc 5146
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 cgtggcgaacgccctttat 116 ||||||||||||||||||| Sbjct: 2568874 cgtggcgaacgccctttat 2568892
>emb|AL589876.11| Mouse DNA sequence from clone RP23-117O11 on chromosome 2, complete sequence Length = 221782 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gcacagacacacactacac 75 ||||||||||||||||||| Sbjct: 66275 gcacagacacacactacac 66257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,938,195 Number of Sequences: 3902068 Number of extensions: 1938195 Number of successful extensions: 214447 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 213877 Number of HSP's gapped (non-prelim): 570 length of query: 178 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 156 effective length of database: 17,147,199,772 effective search space: 2674963164432 effective search space used: 2674963164432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
