ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart34c05 |
|---|---|
| Clone Library Name | barley_pub |
>AROB_PSEAE (P34002) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 368 Score = 53.1 bits (126), Expect = 3e-07 Identities = 31/76 (40%), Positives = 39/76 (51%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GW+ + + R +L +A LPV PP MT E F MAVDKKV D Sbjct: 281 GWLSAAERDRGIRLLRRAGLPVVPPAEMTAEDFMEHMAVDKKVLD-GRLRLVLLQGLGNA 339 Query: 272 VFTGEYDRKALDETLR 225 V TG++ R+ LD TLR Sbjct: 340 VVTGDFPREILDATLR 355
>AROB_PSEPK (Q88CV2) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 365 Score = 50.4 bits (119), Expect = 2e-06 Identities = 30/77 (38%), Positives = 38/77 (49%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWID++ + R +L A LPV PP+ MT F MAVDKKV D Sbjct: 281 GWIDQAERDRGIRLLQDAGLPVVPPQEMTPAHFMEHMAVDKKVLD-GRLRLVLLRQMGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T +Y ++ L TL A Sbjct: 340 VVTDDYSKEILQATLSA 356
>AROB_PSEU2 (Q4ZZE3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 367 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/77 (36%), Positives = 36/77 (46%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWI + R + +A LPV PP+ MT + F MA+DKKV D Sbjct: 281 GWISTQERDRGIRLFQRAGLPVVPPQDMTQDNFLEHMAIDKKVID-GRLRLVLLRRMGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T EY ++ L TL A Sbjct: 340 VITDEYPKEVLQATLVA 356
>AROB_PSEPF (Q3KJA1) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 366 Score = 46.2 bits (108), Expect = 4e-05 Identities = 28/77 (36%), Positives = 36/77 (46%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWI E + R + +A LPV PP+ MT F MA+DKKV D Sbjct: 281 GWISEQERDRGIRLFQRAGLPVIPPEEMTEADFLEHMAIDKKVID-GRLRLVLLRRMGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T +Y ++ L TL A Sbjct: 340 VVTDDYPKEVLQATLGA 356
>AROB_PSE14 (Q48PH0) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 367 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/77 (35%), Positives = 36/77 (46%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWI + R + +A LPV PP+ MT + F MA+DKKV D Sbjct: 281 GWISTQDRDRGIRLFQRAGLPVVPPQDMTEDNFLEHMAIDKKVID-GRLRLVLLRQMGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T +Y ++ L TL A Sbjct: 340 VITDDYPKEVLQATLVA 356
>AROB_PSESM (Q87V15) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 367 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/77 (35%), Positives = 36/77 (46%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWI + R + +A LPV PP+ MT + F MA+DKKV D Sbjct: 281 GWISTQERDRGIRLFQRAGLPVVPPQEMTEDNFLEHMAIDKKVID-GRLRLVLLRQIGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T +Y ++ L TL A Sbjct: 340 VITDDYPQEVLQATLVA 356
>AROB_THICR (Q31DP9) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 358 Score = 45.1 bits (105), Expect = 8e-05 Identities = 28/75 (37%), Positives = 40/75 (53%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 G + ++ +KR IL A LPV PPK M+V++F ++MA DKKV Sbjct: 281 GDLTQTDQKRIAAILQSAHLPVMPPKEMSVQQFLDLMAGDKKVQAGQIRLVLLKAIGQAY 340 Query: 272 VFTGEYDRKALDETL 228 V TG+Y + L+ TL Sbjct: 341 V-TGDYPAELLERTL 354
>AROB_METCA (Q60BY2) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 359 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVAD 318 GWI + R +L++A+LPV PP+ + + F MAVDKK D Sbjct: 281 GWIGDDEVARVIRLLERARLPVVPPRELDADAFLEHMAVDKKNVD 325
>AROB_PSEF5 (Q4KJI8) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 366 Score = 42.4 bits (98), Expect = 6e-04 Identities = 26/77 (33%), Positives = 35/77 (45%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVADXXXXXXXXXXXXXGC 273 GWI + R + +A LPV PP+ M+ F MA+DKKV D Sbjct: 281 GWITSQERDRGIRLFQRAGLPVIPPEEMSEADFLEHMAIDKKVID-GRLRLVLLRRMGEA 339 Query: 272 VFTGEYDRKALDETLRA 222 V T +Y ++ L TL A Sbjct: 340 VVTDDYPKEVLQATLGA 356
>AROB_VIBF1 (Q5E2G0) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 362 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/43 (48%), Positives = 27/43 (62%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G I +S +R IL++AKLP+ PK MTV+ F M DKKV Sbjct: 284 GLISQSDVERICSILEKAKLPLKAPKEMTVDAFMKHMMRDKKV 326
>AROB_VIBVU (Q8DCM0) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 363 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G ID+ + F IL +AKLPV P+ MT + F M DKKV Sbjct: 283 GMIDQQQFDKIFSILSRAKLPVHTPESMTFDDFMTHMMRDKKV 325
>AROB_VIBVY (Q7MH84) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 368 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G ID+ + F IL +AKLPV P+ MT + F M DKKV Sbjct: 288 GMIDQQQFDKIFSILSRAKLPVHTPESMTFDDFMTHMMRDKKV 330
>AROB_NITOC (Q3JEG3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 359 Score = 37.0 bits (84), Expect = 0.023 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVAD 318 GW+ + R ++L++A LP P+ + +F +MAVDKKV D Sbjct: 281 GWLSATEVGRVLNLLERAGLPRHSPEAIHKARFLELMAVDKKVID 325
>AROB_SHEON (Q8EK19) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 359 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/43 (46%), Positives = 22/43 (51%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G IDESI R +L LPV P+ M E F M DKKV Sbjct: 283 GLIDESIVCRIVQLLQAFDLPVKAPESMDFESFIQHMRRDKKV 325
>AROB_VIBCH (Q9KNV2) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 361 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G ID S +R IL +A LPV P+ MT F M DKKV Sbjct: 282 GLIDASQFERILAILKKAHLPVRTPENMTFADFMQHMMRDKKV 324
>AROB_ACIAD (Q6F7E5) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 362 Score = 32.0 bits (71), Expect = 0.74 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 GWI +RT I+ +A LP++ P + +++F + M+ DKKV Sbjct: 282 GWISSGDLERTKKIIQRANLPISCPP-IPLDEFLSYMSHDKKV 323
>AROB_PSYAR (Q4FQI3) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 388 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 GW+ R +L A LP+TPP + V+ N+M DKKV Sbjct: 297 GWLTSDEVARVKRVLLLANLPITPPP-IAVQTALNLMGHDKKV 338
>AROB_VIBPA (Q87L68) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 366 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G I E +R +L +AKLPV P M+ + F M DKKV Sbjct: 287 GLISEEQFERIVALLRRAKLPVHTPDSMSFDDFIKHMMRDKKV 329
>AROB_BUCAP (Q8K939) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 360 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G + ++ KR +L +A LPV PK M+ + M DKKV Sbjct: 283 GCLKKTDYKRILSLLKKAGLPVKGPKNMSAASYLPYMMRDKKV 325
>AROB_HAEDU (Q7VNR5) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 362 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -1 Query: 452 GWIDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKV 324 G + E R +L A LP T P GMT +++ M DKKV Sbjct: 283 GNLTEDQLARLEKLLANAVLPTTSPDGMTADQYLPYMWRDKKV 325
>MYO3A_HUMAN (Q8NEV4) Myosin IIIA (EC 2.7.11.1)| Length = 1616 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +1 Query: 178 EVLELQLGKDHSSQNARRVSSRAFLS-----YSPVKTQPPRGPFRRMSLSNP 318 ++ L LG H RRVSS+ LS P +PPR P + +L+NP Sbjct: 1454 QLKSLYLGVSHHKPINRRVSSQQCLSGVCKGEEPKILRPPRRPRKPKTLNNP 1505
>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1| Length = 2097 Score = 29.3 bits (64), Expect = 4.8 Identities = 22/71 (30%), Positives = 29/71 (40%) Frame = +1 Query: 106 KRNEKNKGSIKCTHSLCLIAY*YTEVLELQLGKDHSSQNARRVSSRAFLSYSPVKTQPPR 285 K+ E GS C I Y+E + L SS NA + + SPV PP Sbjct: 1546 KQLESENGSYCLPQVDCQIEPCYSESVVLSEASTMSSANAMPSTEETYRLSSPV--PPPN 1603 Query: 286 GPFRRMSLSNP 318 PF +S +P Sbjct: 1604 EPFSNVSYEDP 1614
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = -3 Query: 378 KGHDGGEVQKHHGCRQEGRGRIAEAHPSERTSGRLCFHRRVRQESPGRNSPRVLRRV 208 +G G GC+ G HP GR HRR PG + R LRRV Sbjct: 42 RGAAPGRANVARGCQHRHPGPQRADHPGSPVGGRR--HRRRNLAHPGADPGRELRRV 96
>YFZ1_SCHPO (Q9US40) Putative amino-acid permease C1039.01| Length = 567 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +1 Query: 289 PFRRMSLSNPSATFLSTAMMFLNFSTVMPFGG 384 P R +S N AT+L+TA +F+ T++ +GG Sbjct: 210 PTRIISRINGVATYLNTAFLFIAGITILAYGG 241
>RPTN_HUMAN (Q6XPR3) Repetin| Length = 784 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = -3 Query: 441 RVHQETDI*HT*SSQASCDTTKGHDGGEVQKHHGCRQEGRGRIAEAHPSERTSGRLCFHR 262 ++ QE + H SC + +GH + ++ HG EG AE +T R H Sbjct: 665 QIQQERPLCHKGRDWQSCSSEQGHRQAQTRQSHG---EGLSHWAEEEQGHQTWDR---HS 718 Query: 261 RVRQESP 241 QE P Sbjct: 719 HESQEGP 725
>REPA2_BUCAI (Q9ZEY9) Probable replication-associated protein repA2| Length = 250 Score = 28.5 bits (62), Expect = 8.2 Identities = 25/89 (28%), Positives = 37/89 (41%) Frame = +1 Query: 40 PTMNCYYNLEPAPYYHTPLFSPKRNEKNKGSIKCTHSLCLIAY*YTEVLELQLGKDHSSQ 219 P N YNL+P F+P +NE+ K + C Y +V E+ + + H Sbjct: 2 PRKNYIYNLKP-------FFNPSKNERKKSTFIC--------YAMKKVSEIDVARSH--- 43 Query: 220 NARRVSSRAFLSYSPVKTQPPRGPFRRMS 306 +RA L P KT FRR++ Sbjct: 44 -----LNRALLPIDP-KTGNVLPRFRRLN 66
>SSH1_YEAST (P38353) Sec sixty-one protein homolog| Length = 490 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -2 Query: 181 LLYTSRLSDRVSECILCYLYFFHFVLVRIM 92 LLYT LS S IL Y++ F FVL++++ Sbjct: 288 LLYTGCLSVLFSYTILFYIHIFAFVLIQLV 317
>ASCL3_HUMAN (Q9NQ33) Achaete-scute homolog 3 (bHLH transcriptional regulator| Sgn-1) Length = 180 Score = 28.5 bits (62), Expect = 8.2 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 55 YYNLEPAPYYHTPLFSPKRNEKNKGSIKCTH 147 Y N Y + P F+ KRNE+ + +KC + Sbjct: 79 YPNYRGCEYSYGPAFTRKRNERERQRVKCVN 109
>AROB_COXBU (Q83AJ2) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 360 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -1 Query: 446 IDESIKKRTFDILDQAKLPVTPPKGMTVEKFRNIMAVDKKVAD 318 +D +R +L Q LP+ PK + ++ + M +DKKVA+ Sbjct: 286 LDFESLQRICRLLTQISLPIHFPKSINADELLSAMYMDKKVAN 328 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,272,495 Number of Sequences: 219361 Number of extensions: 1168000 Number of successful extensions: 3292 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3291 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
