ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK098959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
2dbj|AK071977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
4dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
5gb|AY104307.1| Zea mays PCO088734 mRNA sequence 78 3e-11
6gb|DQ166522.1| Fagus sylvatica putative 3-dehydroquinate synthas... 44 0.39
7gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosom... 40 6.1
8emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on ... 40 6.1
9emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chr... 40 6.1
10gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 6.1
11emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 40 6.1
12gb|AC159885.2| Mus musculus BAC clone RP24-432B19 from chromosom... 40 6.1
13dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.1 
>dbj|AK098959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067A20, full
            insert sequence
          Length = 1649

 Score =  208 bits (105), Expect = 1e-50
 Identities = 204/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtcgcagaacgcgcggagagtttcgtccagggctttcctgtcgtactcgccggtgaaaac 272
            ||||||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 1373 gtcgcagaatgcacggagggtttcgtcgagggcattcctgtcgtaatcgccagtgaaaac 1314

                                                                        
Query: 273  acagcctcccagaggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttctt 332
            ||||| |||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 1313 acagcttcccagaggtcctttcaggaggatgagcctcagcaatccatcagcaaccttctt 1254

                                                                        
Query: 333  gtcgacagccatgatgtttctgaacttctccaccgtcatgccctttggtggtgtcacagg 392
             || || ||||| ||  || ||||||||||||| |||||| ||| ||| ||||| |  ||
Sbjct: 1253 atcaacggccataatacttttgaacttctccactgtcatggcctctggaggtgtaattgg 1194

                                                                     
Query: 393  aagcttggcttgatcaagtatgtcaaatgtccgtttcttgatggactcgtctatcca 449
            |||||| ||||  || |||||||||| || |||||||||||| ||||||||||||||
Sbjct: 1193 aagcttcgctttctctagtatgtcaattgcccgtttcttgattgactcgtctatcca 1137
to top
>dbj|AK071977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087E18, full
            insert sequence
          Length = 1652

 Score =  200 bits (101), Expect = 3e-48
 Identities = 203/237 (85%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtcgcagaacgcgcggagagtttcgtccagggctttcctgtcgtactcgccggtgaaaac 272
            ||||||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 1376 gtcgcagaatgcacggagggtttcgtcgagggcattcctgtcgtaatcgccagtgaaaac 1317

                                                                        
Query: 273  acagcctcccagaggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttctt 332
            ||||| |||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 1316 acagcttcccagaggtcctttcaggaggatgagcctcagcaatccatcagcaaccttctt 1257

                                                                        
Query: 333  gtcgacagccatgatgtttctgaacttctccaccgtcatgccctttggtggtgtcacagg 392
             || || ||||| ||  || ||||||||||||| |||||| ||| | | ||||| |  ||
Sbjct: 1256 atcaacggccataatacttttgaacttctccactgtcatggcctcttgaggtgtaattgg 1197

                                                                     
Query: 393  aagcttggcttgatcaagtatgtcaaatgtccgtttcttgatggactcgtctatcca 449
            |||||| ||||  || |||||||||| || |||||||||||| ||||||||||||||
Sbjct: 1196 aagcttcgctttctctagtatgtcaattgcccgtttcttgattgactcgtctatcca 1140
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Plus

                                                                            
Query: 213      gtcgcagaacgcgcggagagtttcgtccagggctttcctgtcgtactcgccggtgaaaac 272
                ||||||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 20924844 gtcgcagaatgcacggagggtttcgtcgagggcattcctgtcgtaatcgccagtgaaaac 20924903

                                                                            
Query: 273      acagcctcccagaggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttctt 332
                ||||| |||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 20924904 acagcttcccagaggtcctttcaggaggatgagcctcagcaatccatcagcaaccttctt 20924963



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 353      tgaacttctccaccgtcatgccctttggtggtgtcacaggaagcttggcttgatcaagta 412
                ||||||||||||| |||||| ||| ||| ||||| |  |||||||| ||||  || ||||
Sbjct: 20925161 tgaacttctccactgtcatggcctctggaggtgtaattggaagcttcgctttctctagta 20925220

                                                     
Query: 413      tgtcaaatgtccgtttcttgatggactcgtctatcca 449
                |||||| || |||||||||||| ||||||||||||||
Sbjct: 20925221 tgtcaattgcccgtttcttgattgactcgtctatcca 20925257
to top
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1274F11
          Length = 171257

 Score =  143 bits (72), Expect = 6e-31
 Identities = 108/120 (90%)
 Strand = Plus / Plus

                                                                         
Query: 213   gtcgcagaacgcgcggagagtttcgtccagggctttcctgtcgtactcgccggtgaaaac 272
             ||||||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 16933 gtcgcagaatgcacggagggtttcgtcgagggcattcctgtcgtaatcgccagtgaaaac 16992

                                                                         
Query: 273   acagcctcccagaggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttctt 332
             ||||| |||||||||||||||||| |||||||||||||||||||| || || ||||||||
Sbjct: 16993 acagcttcccagaggtcctttcaggaggatgagcctcagcaatccatcagcaaccttctt 17052



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 353   tgaacttctccaccgtcatgccctttggtggtgtcacaggaagcttggcttgatcaagta 412
             ||||||||||||| |||||| ||| ||| ||||| |  |||||||| ||||  || ||||
Sbjct: 17250 tgaacttctccactgtcatggcctctggaggtgtaattggaagcttcgctttctctagta 17309

                                                  
Query: 413   tgtcaaatgtccgtttcttgatggactcgtctatcca 449
             |||||| || |||||||||||| ||||||||||||||
Sbjct: 17310 tgtcaattgcccgtttcttgattgactcgtctatcca 17346
to top
>gb|AY104307.1| Zea mays PCO088734 mRNA sequence
          Length = 1705

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttcttgtcgacagccatg 345
            |||||||||||||||||||| |||| ||  || || || ||||||||||| |||||||||
Sbjct: 1335 ggtcctttcagaaggatgagtctcaacagaccatcagcaaccttcttgtcaacagccatg 1276

                                       
Query: 346  atgtttctgaacttctccaccgtcatg 372
            |||||| | |||||||| || ||||||
Sbjct: 1275 atgtttttaaacttctctacggtcatg 1249
to top
>gb|DQ166522.1| Fagus sylvatica putative 3-dehydroquinate synthase mRNA, complete cds
          Length = 1741

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 283  agaggtcctttcagaaggatgagcctcagcaatccgtccgcgaccttcttgtcgacagcc 342
            ||||| ||||| |||||||||||||| || | ||| || || |||||||| || ||||||
Sbjct: 1358 agaggaccttttagaaggatgagccttagtagtccatcagctaccttcttatcaacagcc 1299

              
Query: 343  at 344
            ||
Sbjct: 1298 at 1297
to top
>gb|AC126262.4| Mus musculus BAC clone RP23-359F12 from chromosome 12, complete sequence
          Length = 208710

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    tgaaaacacagcctcccaga 285
              ||||||||||||||||||||
Sbjct: 109645 tgaaaacacagcctcccaga 109664
to top
>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1,
            complete sequence
          Length = 117939

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  acacagcctcccagaggtcc 290
            ||||||||||||||||||||
Sbjct: 4332 acacagcctcccagaggtcc 4313
to top
>emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chromosome 13, complete
            sequence
          Length = 99257

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  cacagcctcccagaggtcct 291
            ||||||||||||||||||||
Sbjct: 3860 cacagcctcccagaggtcct 3841
to top
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    gccatgatgtttctgaactt 359
              ||||||||||||||||||||
Sbjct: 603303 gccatgatgtttctgaactt 603322
to top
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   gaacttctccaccgtcatgccctt 377
             ||||||||||||| ||||||||||
Sbjct: 71307 gaacttctccaccttcatgccctt 71284
to top
>gb|AC159885.2| Mus musculus BAC clone RP24-432B19 from chromosome 12, complete
             sequence
          Length = 177570

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 180   agtgctggaactccagcttggtaa 203
             |||| |||||||||||||||||||
Sbjct: 80499 agtgatggaactccagcttggtaa 80476
to top
>dbj|AP002373.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-212D19, complete
              sequence
          Length = 138197

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aattactggggcatgatgcc 40
              ||||||||||||||||||||
Sbjct: 107305 aattactggggcatgatgcc 107324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,122,151
Number of Sequences: 3902068
Number of extensions: 4122151
Number of successful extensions: 64415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64374
Number of HSP's gapped (non-prelim): 41
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top