ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart34c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478753.1| Oryza sativa (japonica cultivar-group), mRNA 88 3e-14
2ref|XM_506417.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 3e-14
3gb|AF466357.1| Oryza sativa (japonica cultivar-group) floral org... 88 3e-14
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
5dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
6dbj|AK101897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
7dbj|AK061685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
8gb|AY109014.1| Zea mays PCO154451 mRNA sequence 56 1e-04
9gb|AY104164.1| Zea mays PCO154452 mRNA sequence 56 1e-04
10gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, com... 48 0.026
11gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, co... 48 0.026
12emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in ... 46 0.10
13emb|AL935050.11| Zebrafish DNA sequence from clone CH211-59B1, c... 46 0.10
14emb|BX248110.8| Zebrafish DNA sequence from clone DKEY-122I21 in... 46 0.10
15emb|BX001030.7| Zebrafish DNA sequence from clone CH211-234P6 in... 46 0.10
16emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 ... 44 0.40
17ref|XM_822709.1| Trypanosoma brucei TREU927 hypothetical protein... 42 1.6
18emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 ... 42 1.6
19emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 i... 42 1.6
20emb|BX324143.9| Zebrafish DNA sequence from clone CH211-197D1 in... 42 1.6
21emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 ... 42 1.6
22emb|AL935128.13| Zebrafish DNA sequence from clone CH211-183D5 i... 42 1.6
23gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complet... 42 1.6
24emb|AL928973.3| Mouse DNA sequence from clone RP23-259J7 on chro... 42 1.6
25ref|XM_369647.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 6.3
26gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
27emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in ... 40 6.3
28emb|AL035408.5|HS55I10 Human DNA sequence from clone CTA-55I10 o... 40 6.3
29emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chro... 40 6.3
30emb|AL808019.6| Zebrafish DNA sequence from clone CH211-258D20 i... 40 6.3
31emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in... 40 6.3
32gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, com... 40 6.3
33tpg|BK005057.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 40 6.3
34gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, com... 40 6.3
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37gb|DQ054598.1| Homo sapiens eosinophil peroxidase (EPX) gene, co... 40 6.3
38gb|AC005866.4| Homo sapiens 12 BAC RP11-407G6 (Roswell Park Canc... 40 6.3
39emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 40 6.3
40gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.50... 40 6.3
41gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 6.3
42gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
43emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126... 40 6.3 
>ref|XM_478753.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1359

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
            ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 1014 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 955

                    
Query: 460  cgcagagg 467
            ||||||||
Sbjct: 954  cgcagagg 947
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>ref|XM_506417.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1019_E02.4 mRNA
          Length = 1451

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
            ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 1016 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 957

                    
Query: 460  cgcagagg 467
            ||||||||
Sbjct: 956  cgcagagg 949
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>gb|AF466357.1| Oryza sativa (japonica cultivar-group) floral organ regulator 1
            (FOR1) mRNA, complete cds
          Length = 1392

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
            ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 1003 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 944

                    
Query: 460  cgcagagg 467
            ||||||||
Sbjct: 943  cgcagagg 936
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                            
Query: 400      ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
                ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 22821113 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 22821172

                        
Query: 460      cgcagagg 467
                ||||||||
Sbjct: 22821173 cgcagagg 22821180
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 400   ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
             ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 14380 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 14439

                     
Query: 460   cgcagagg 467
             ||||||||
Sbjct: 14440 cgcagagg 14447
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>dbj|AK101897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P18, full
            insert sequence
          Length = 1450

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
            ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 1015 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 956

                    
Query: 460  cgcagagg 467
            ||||||||
Sbjct: 955  cgcagagg 948
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>dbj|AK061685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A10, full
            insert sequence
          Length = 1359

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 400  ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
            ||||||||||||| |||||||| ||||| || ||||||||||||||| | ||||||||||
Sbjct: 1014 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 955

                    
Query: 460  cgcagagg 467
            ||||||||
Sbjct: 954  cgcagagg 947
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>gb|AY109014.1| Zea mays PCO154451 mRNA sequence
          Length = 674

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
           |||||||| |||| |||||||| ||||||   |||||||||||   ||||||||||||||
Sbjct: 666 ggttgtgcgcgtacggcttgcacccgtgcttgatgacgccgtggcccttggggagcgggc 607

               
Query: 460 cgca 463
           ||||
Sbjct: 606 cgca 603
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>gb|AY104164.1| Zea mays PCO154452 mRNA sequence
          Length = 1412

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459
           |||||||| |||| |||||||| ||||||   ||||||||||||  |||||||||||| |
Sbjct: 981 ggttgtgcgcgtacggcttgcacccgtgcttgatgacgccgtgccccttggggagcggcc 922

               
Query: 460 cgca 463
           ||||
Sbjct: 921 cgca 918
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>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence
          Length = 200891

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 62   acacgggcacacacacactctctc 85
            ||||||||||||||||||||||||
Sbjct: 4180 acacgggcacacacacactctctc 4203
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>gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, complete sequence
          Length = 187453

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 62     acacgggcacacacacactctctc 85
              ||||||||||||||||||||||||
Sbjct: 172012 acacgggcacacacacactctctc 172035
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>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1, complete
              sequence
          Length = 165355

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 73     cacacactctctcggggaagcgc 95
              |||||||||||||||||||||||
Sbjct: 135251 cacacactctctcggggaagcgc 135229
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>emb|AL935050.11| Zebrafish DNA sequence from clone CH211-59B1, complete sequence
          Length = 177773

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 69    cacacacacactctctcggggaagcgc 95
             |||||||||||||||||||| ||||||
Sbjct: 93545 cacacacacactctctcgggtaagcgc 93519
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>emb|BX248110.8| Zebrafish DNA sequence from clone DKEY-122I21 in linkage group 20,
             complete sequence
          Length = 78928

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 69    cacacacacactctctcggggaagcgc 95
             |||||||||||||||||||| ||||||
Sbjct: 19819 cacacacacactctctcgggcaagcgc 19793
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>emb|BX001030.7| Zebrafish DNA sequence from clone CH211-234P6 in linkage group 24,
              complete sequence
          Length = 156560

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 63     cacgggcacacacacactctctc 85
              |||||||||||||||||||||||
Sbjct: 137927 cacgggcacacacacactctctc 137905
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>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6,
            complete sequence
          Length = 162560

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 70   acacacacactctctcggggaagcgc 95
            ||||||||||||||||||| ||||||
Sbjct: 5232 acacacacactctctcgggcaagcgc 5207
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>ref|XM_822709.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.389.0290)
           partial mRNA
          Length = 1032

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 342 ggcgaggtcgctcagagctgg 362
           |||||||||||||||||||||
Sbjct: 817 ggcgaggtcgctcagagctgg 837
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>emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 in linkage group 15,
              complete sequence
          Length = 123109

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 71     cacacacactctctcggggaagcgc 95
              |||||||||||||||||| ||||||
Sbjct: 101330 cacacacactctctcgggcaagcgc 101306
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>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14,
              complete sequence
          Length = 184463

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 71     cacacacactctctcggggaagcgc 95
              |||||||||||||||||| ||||||
Sbjct: 118625 cacacacactctctcgggcaagcgc 118649
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>emb|BX324143.9| Zebrafish DNA sequence from clone CH211-197D1 in linkage group 3,
             complete sequence
          Length = 105743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    cacacacactctctcggggaagcgc 95
             |||||||||||||||||| ||||||
Sbjct: 89949 cacacacactctctcgggcaagcgc 89973
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>emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 in linkage group 19,
             complete sequence
          Length = 172655

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 71    cacacacactctctcggggaagcgc 95
             |||||||||||||||||| ||||||
Sbjct: 50151 cacacacactctctcgggcaagcgc 50127
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>emb|AL935128.13| Zebrafish DNA sequence from clone CH211-183D5 in linkage group 7,
            complete sequence
          Length = 152770

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 71   cacacacactctctcggggaagcgc 95
            |||||||||||||||||| ||||||
Sbjct: 8857 cacacacactctctcgggcaagcgc 8881
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>gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complete sequence
          Length = 199358

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    tacacaaagctagcagctctc 170
              |||||||||||||||||||||
Sbjct: 151579 tacacaaagctagcagctctc 151599
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>emb|AL928973.3| Mouse DNA sequence from clone RP23-259J7 on chromosome 2, complete
             sequence
          Length = 157458

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    acacgggcacacacacactct 82
             |||||||||||||||||||||
Sbjct: 75357 acacgggcacacacacactct 75377
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>ref|XM_369647.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG05817.4) partial mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 acacaaagctagcagctctc 170
           ||||||||||||||||||||
Sbjct: 285 acacaaagctagcagctctc 266
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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0018K15, complete sequence
          Length = 168519

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 433   tgacgccgtgcagcttggggagcg 456
             |||||||||||||||||| |||||
Sbjct: 93254 tgacgccgtgcagcttggcgagcg 93277
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>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete
              sequence
          Length = 242558

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 68     gcacacacacactctctcggggaagcgc 95
              |||||||||||| |||||||| ||||||
Sbjct: 216489 gcacacacacacactctcgggcaagcgc 216516
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>emb|AL035408.5|HS55I10 Human DNA sequence from clone CTA-55I10 on chromosome 1q32.2-41
            Contains the 3' end of a novel gene and a novel gene,
            complete sequence
          Length = 90429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  agctagcagctctcaaggac 176
            ||||||||||||||||||||
Sbjct: 5436 agctagcagctctcaaggac 5417
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>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the
             Vamp2 gene for vesicle-associated membrane 2, the Per1
             gene for period homolog 1 (Drosophila), the Hes7 gene for
             hairy and enhancer of split 7 (Drosophila), the Aloxe3
             gene for arachidonate lipoxygenase 3, the Alox12b gene for
             arachidonate 12-lipoxygenase 12R type, the Alox15b gene
             for arachidonate 15-lipoxygenase second type, the Gucy2e
             gene for guanylate cyclase 2e, a novel gene, the gene for
             LYST-interacting protein LIP8 (Lip8-pending), the gene for
             the likely ortholog of H. sapiens trafficking protein
             particle complex 1 (TRAPPC1)), the Kcnab3 gene for
             potassium voltage-gated channel shaker-related subfamily
             beta member 3, a novel gene, the 3' end of the Chd3 gene
             for chromodomain helicase DNA binding protein 3 and six
             CpG islands, complete sequence
          Length = 261224

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    acacgggcacacacacactctctc 85
             |||||| |||||||||||||||||
Sbjct: 40360 acacggacacacacacactctctc 40337
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>emb|AL808019.6| Zebrafish DNA sequence from clone CH211-258D20 in linkage group 7
             Contains a gene for a novel actinin and four CpG islands,
             complete sequence
          Length = 159698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    acacgggcacacacacactctctc 85
             ||||| ||||||||||||||||||
Sbjct: 10172 acacgcgcacacacacactctctc 10149
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>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12,
             complete sequence
          Length = 126042

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 68    gcacacacacactctctcggggaagcgc 95
             |||||||||||| |||||||| ||||||
Sbjct: 73154 gcacacacacacactctcgggcaagcgc 73127
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>gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, complete sequence
          Length = 175936

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    acacgggcacacacacactc 81
             ||||||||||||||||||||
Sbjct: 71719 acacgggcacacacacactc 71738
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>tpg|BK005057.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 54 (WRKY54) gene, complete cds
          Length = 1106

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 433 tgacgccgtgcagcttggggagcg 456
           |||||||||||||||||| |||||
Sbjct: 202 tgacgccgtgcagcttggcgagcg 179
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>gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, complete sequence
          Length = 220031

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    aacactgacagacaccactc 313
              ||||||||||||||||||||
Sbjct: 145525 aacactgacagacaccactc 145544
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     acacgggcacacacacactctctc 85
              ||||| ||||||||||||||||||
Sbjct: 870843 acacgcgcacacacacactctctc 870866
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 433      tgacgccgtgcagcttggggagcg 456
                |||||||||||||||||| |||||
Sbjct: 23407718 tgacgccgtgcagcttggcgagcg 23407741
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>gb|DQ054598.1| Homo sapiens eosinophil peroxidase (EPX) gene, complete cds
          Length = 15329

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 62   acacgggcacacacacactctctc 85
            ||||| ||||||||||||||||||
Sbjct: 4626 acacgtgcacacacacactctctc 4649
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>gb|AC005866.4| Homo sapiens 12 BAC RP11-407G6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119388

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    acacgggcacacacacactctctc 85
             ||||| ||||||||||||||||||
Sbjct: 11040 acacgcgcacacacacactctctc 11063
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
              sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     cacgggcacacacacactct 82
              ||||||||||||||||||||
Sbjct: 202287 cacgggcacacacacactct 202306
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>gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.506_H_21, complete sequence
          Length = 162083

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     acacgggcacacacacactctctc 85
              ||||| ||||||||||||||||||
Sbjct: 117298 acacgtgcacacacacactctctc 117321
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    ggcggcgaggtcgctcagag 358
              ||||||||||||||||||||
Sbjct: 223156 ggcggcgaggtcgctcagag 223137
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 62     acacgggcacacacacactctctc 85
              ||||| ||||||||||||||||||
Sbjct: 870843 acacgcgcacacacacactctctc 870866
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>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 134217

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 62   acacgggcacacacacactctctc 85
            ||||| ||||||||||||||||||
Sbjct: 8428 acacgcgcacacacacactctctc 8451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,457,816
Number of Sequences: 3902068
Number of extensions: 12457816
Number of successful extensions: 89279
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89058
Number of HSP's gapped (non-prelim): 219
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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