Clone Name | rbart34c03 |
---|---|
Clone Library Name | barley_pub |
>S35B1_XENTR (Q8AXS6) Solute carrier family 35 member B1| Length = 323 Score = 36.2 bits (82), Expect = 0.044 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = -3 Query: 410 GGRGARVLINFVGVFACYSYYGYGAPTTSSYTLLLLFG-SENGKRVKGVAALPLLECL 240 G GAR+L+ F+GVF CY YYG T + T +G E ++ + +L ++C+ Sbjct: 8 GSGGARLLVCFLGVFVCYFYYGILQETITRGT----YGEGEKQEKFRFALSLVFVQCI 61
>S35B1_XENLA (Q6GQ70) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 320 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 401 GARVLINFVGVFACYSYYGYGAPTTSSYTLLLLFG-SENGKRVKGVAALPLLECL 240 G R+L+ F+GVF CY YYG T + T +G E ++ + +L ++C+ Sbjct: 9 GLRLLVCFLGVFVCYFYYGILQETITRRT----YGEGEKQEKFRFALSLVFVQCI 59
>YE49_HELPJ (Q9ZJG9) UPF0161 protein jhp_1342| Length = 118 Score = 32.0 bits (71), Expect = 0.83 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Frame = -3 Query: 335 PTTSSYTLLLLFGSENGKRVKGVAALPLLECLPVAELG-----RWLRRWSLAYCQKG-SR 174 PT S+Y L LL E+ G A+ +L C P G L+R SL K +R Sbjct: 36 PTCSNYALWLLC-FESPLVAMGKIAIRILSCNPFCSGGIAYPTTRLKRPSLLQSHKDFNR 94 Query: 173 VFPSVSFWLVSVYFSFHMYYAPK 105 F +++FWLV S YY K Sbjct: 95 NFKTITFWLVPTTKSRATYYIIK 117
>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1004 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Frame = +2 Query: 83 HESCAFAPLGHSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTT---------GLAQP 235 H+S A +G S+C KS++TP T + + N P +S T G P Sbjct: 512 HQSPALEDIGCSSCAEKSKKTPCGTANGPVNTEVKANGPHLYSSPTDSTDPRRLPGANTP 571 Query: 236 QAGIPAAVGQPHPL 277 G+ G P PL Sbjct: 572 LPGLSHRQGWPRPL 585
>BLNK_MOUSE (Q9QUN3) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (Slp-65) (Lymp Length = 457 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +2 Query: 233 PQAGIPAAVGQPHPLLF-SHFPNQKEEAKCRSWW*EHRNRSRSNKQTHRRN*SG 391 P+AG PAA G H F S F +Q+ E + W+ +R + + HR N G Sbjct: 315 PEAGSPAADGPFHSFPFNSTFADQEAELLGKPWYAGACDRKSAEEALHRSNKDG 368
>S35B1_CHICK (Q8AWB6) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 325 Score = 30.4 bits (67), Expect = 2.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 428 ARERTNGGRGARVLINFVGVFACYSYYG 345 A R+ R+ + F+GVFACY YYG Sbjct: 5 AGRRSRSPERLRLPVCFLGVFACYFYYG 32
>XTH32_ARATH (Q9SJL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) Length = 299 Score = 30.0 bits (66), Expect = 3.2 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = -3 Query: 473 CQDFRRDRSLTPEC 432 C+D++RD SLTPEC Sbjct: 284 CKDYKRDHSLTPEC 297
>RL39_PYRKO (Q5JGT6) 50S ribosomal protein L39e| Length = 51 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 99 LPLWGIVHVKRKVDRHQPKRNRWKDTR 179 +P+W IV RKV H PKR W+ T+ Sbjct: 23 VPVWVIVKTNRKVITH-PKRRHWRRTK 48
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 188 GNMPTTNASTTGLAQPQAGIPAAVGQP 268 GN P T+ +TG+A+PQA P +P Sbjct: 215 GNNPFTSGGSTGMARPQAPRPGGAPRP 241
>ATOE_HAEIN (P44051) Short-chain fatty acids transporter| Length = 447 Score = 29.3 bits (64), Expect = 5.4 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = -3 Query: 392 VLINFVGVFACYSYYGYGAPTTSSYTLLLLFGSENGKRVKGVAALPLLECLPVA 231 VL+ F+G AC +G+G + +F E +R+KG L+ C +A Sbjct: 99 VLVTFMGSIACIINWGFGLVVGA------MFAKEVARRIKGSDYALLIACAYIA 146
>LNT_PSESM (Q87VX7) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 506 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Frame = -3 Query: 362 CYSYYGYGAPTTSSYTLLLLFGSENGK-----RVKGVAALPLLECLPVAELGRWLRR 207 CY + YGA T+ Y + +G + + +AA+ L LP RWLRR Sbjct: 60 CYGFGLYGAGTSWIYVSIHTYGGASALLAGLLMLLFIAAIALFFALPAWVWARWLRR 116
>RBD2_KLULA (Q6CR06) Rhomboid protein 2 (EC 3.4.21.-)| Length = 271 Score = 28.9 bits (63), Expect = 7.1 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -3 Query: 326 SSYTLLLLFGSENGKRVKGVAALPLLECLPVAELGRWLRRWSLAYCQKGSRVFPSVSFWL 147 S+++++++F +G GV +L L V ++ YC GS +FP+V Sbjct: 76 STFSMIVMFEESHGTLYTGV----ILNLLAVFT--------AIPYCLIGSLLFPNVEIGG 123 Query: 146 VS-VYFSFHMYYAPKGQR 96 S +FSF Y+A K R Sbjct: 124 ASGWFFSFLGYFAVKESR 141
>YXT2_CAEEL (Q18078) Hypothetical protein C18B2.2| Length = 356 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 113 HSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQ 238 +S + + PTK KQM+ +L+ NM A + + QP+ Sbjct: 39 YSISNSNTDDAPTKKKQMKAFFSLYHNMDELKAQNSDVVQPR 80
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Frame = +2 Query: 140 QTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIP----AAVGQPHPLLFSHFPNQKE 307 Q PT + Q E+ G A +AQPQA P ++V H + S + E Sbjct: 1025 QAPTTSSQQAVLESTQGVSQVAPAEPVAVAQPQATQPTTLASSVDSAHSDVASGMSDGNE 1084 Query: 308 EAKCRSWW*EHRNRSRSNKQTHRRN*SGHARH 403 S R+ R+ K+ +R++ +RH Sbjct: 1085 NVPSSS----GRHEGRTTKRHYRKSVRSRSRH 1112
>HCFC1_MESAU (P51611) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF Length = 2090 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = +2 Query: 116 STCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQP 268 +T S Q E HET + TT S G QP+ G A G+P Sbjct: 1315 TTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGAGQPEGGQQPAGGRP 1365
>PINC_HUMAN (P48059) Protein PINCH (Particularly interesting new Cys-His| protein) (LIM and senescent cell antigen-like domains 1) (NY-REN-48 antigen) Length = 324 Score = 28.5 bits (62), Expect = 9.2 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Frame = -2 Query: 264 CPTAAGMPACG*ARPVVEALVVGILPKRVSCLSIXXXXXXXXXXXVSHVLCPKGAK---A 94 C G+P CG R +E VV + K+ V H +C K K Sbjct: 183 CHDKMGVPICGACRRPIEGRVVNAMGKQ---------------WHVEHFVCAKCEKPFLG 227 Query: 93 HDS*HTVVHAHCNTHYSNMF 34 H A+C THY+ +F Sbjct: 228 HRHYERKGLAYCETHYNQLF 247
>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF| N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-termi Length = 2045 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/51 (33%), Positives = 20/51 (39%) Frame = +2 Query: 116 STCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQP 268 +T S Q E HET + TT S G QP+ G A G P Sbjct: 1315 TTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGAGQPEGGQQPASGHP 1365
>ZN228_HUMAN (Q9UJU3) Zinc finger protein 228| Length = 913 Score = 28.5 bits (62), Expect = 9.2 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Frame = +2 Query: 98 FAPLGHSTCETKSRQTPTKTKQMERHETLFGNMPTTNASTTGLAQPQAGIPAAVGQPHPL 277 F+P S+ +T + T + + + G L Q AGIP + + Sbjct: 98 FSPKELSSRQTWQQSTGGLIRCQDFLKVFQGKNSQLQEQGNSLGQAWAGIPVQISEDKNY 157 Query: 278 LFSHFPNQKEEAKCR---SWW*EHRNRSRSNKQTH 373 +F+H N K + SW H R K++H Sbjct: 158 IFTHIGNGSNYIKSQGYPSWRAHHSWRKMYLKESH 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,922,120 Number of Sequences: 219361 Number of extensions: 1568884 Number of successful extensions: 4308 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4306 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)